Clone Sequence Records
BO01044.3prime Sequence
809 bp (808 high quality bases) assembled on 2005-11-30
> BO01044.3prime
ATGGTCTAGAAAGCTTGCTGTGATCTCGGGAGCACTGTGCTTCAGCTCCG
GCGACGTGGAGAAGGGCCGATGCAGCATCAGTTGGCCACTGTGATGGTAG
CCGGTCGTGGTGGGCTCATGGTGTTGGTTGCCACCTCCTCCTCCGACGGA
TGCTGCCGCCGCCACTGCCGTGGAGTTGAGCTTCTCCGGGGAGTTTATCC
TCAGCTTCGGCGGCGGATGCGGTGGTCCATGACCACCTGGAACGCACTCC
ACACTGTAGGCAGCCGCGTAGGCCGGGTGATGCAGTGGCGGTCCGCCGGA
TGCGCCGTTCAGTGCCAGCGACTGCGGCAGCTGCGGATGCGGACGCAGGA
CAATCGGCTGGATGGGAAACTGCTGCGACATCTCCTTCAGGTTGCTGAAG
CTCTGCAGGTAACAGCCGGCGCTGAACAGACTGGTGGCCGCGTCCAGCTT
GAAGGGTGGCAGACAGCCCGGACCGGTCAGAGGTCCTCCGGGTCCTGCGC
CCGCCCCGCCCCCGTAGCCCGGCGGCAGTTGGGGCGGCGTGTGGGTGGGC
GAGGCCAGCGGCAGGGGCAGCGAGAGGGGCAGTGGCAGCGATCCGCTCAG
ATCCCGCGGCTTGTCGTCGTCCACGCTCAGGCTCTCCTCGCGGTCGTTGG
CGCCGTTGGAGGTGCTGCCCGGACTATGCTGCAGCTGCAGGCTGCTCGGC
ACCGGCGAGTGGGTGCCCAGTGAGATGTCCGAGTCGGAGCTGTCCGACGG
CGTTGGTGAGGCAGCTCCGTCCGCCCGCCGGCTCCGACAGCCCATGTCGA
CTGATAACT
BO01044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18455-PA | 1464 | Optix-RA | 685..1461 | 795..19 | 3835 | 99.7 | Minus |
CG18455-PB | 780 | Optix-RB | 1..777 | 795..19 | 3835 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:11:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 1360..2136 | 795..19 | 3855 | 99.7 | Minus |
Optix-RB | 1470 | CG18455-RB | 162..938 | 795..19 | 3855 | 99.7 | Minus |
Optix-RA | 2358 | CG18455-RA | 1050..1826 | 795..19 | 3855 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041221..8041997 | 795..19 | 3855 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:11:31 has no hits.
BO01044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:48 Download gff for
BO01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-PB | 1..780 | 16..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:10 Download gff for
BO01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18455-PB | 1..780 | 16..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:18 Download gff for
BO01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1826 | 19..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:08:47 Download gff for
BO01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1826 | 19..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:08:47 Download gff for
BO01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8041215..8041997 | 19..804 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:18 Download gff for
BO01044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3928720..3929502 | 19..804 | 99 | | Minus |
BO01044.5prime Sequence
809 bp (808 high quality bases) assembled on 2005-11-30
> BO01044.5prime
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACAGCAAGCT
TTCTAGACC
BO01044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18455-PA | 1464 | Optix-RA | 685..1461 | 17..793 | 3835 | 99.7 | Plus |
CG18455-PB | 780 | Optix-RB | 1..777 | 17..793 | 3835 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 1360..2136 | 17..793 | 3855 | 99.7 | Plus |
Optix-RB | 1470 | CG18455-RB | 162..938 | 17..793 | 3855 | 99.7 | Plus |
Optix-RA | 2358 | CG18455-RA | 1050..1826 | 17..793 | 3855 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041221..8041997 | 17..793 | 3855 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:59:02 has no hits.
BO01044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:49 Download gff for
BO01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-PB | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:12 Download gff for
BO01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18455-PB | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:41 Download gff for
BO01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1826 | 8..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:34 Download gff for
BO01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1044..1826 | 8..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:34 Download gff for
BO01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8041215..8041997 | 8..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:41 Download gff for
BO01044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3928720..3929502 | 8..793 | 99 | | Plus |
BO01044.complete Sequence
811 bp (811 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629400
> BO01044.complete
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACAGCAAGCT
TTCTAGACCAT
BO01044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 1479 | CG18455-PC | 685..1461 | 17..793 | 3855 | 99.7 | Plus |
Optix-RB | 780 | CG18455-PB | 1..777 | 17..793 | 3855 | 99.7 | Plus |
Optix-RA | 1464 | CG18455-PA | 685..1461 | 17..793 | 3855 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-RC | 2668 | CG18455-RC | 1360..2136 | 17..793 | 3855 | 99.7 | Plus |
Optix-RB | 1470 | CG18455-RB | 162..938 | 17..793 | 3855 | 99.7 | Plus |
Optix-RA | 2358 | CG18455-RA | 1050..1826 | 17..793 | 3855 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8041221..8041997 | 17..793 | 3855 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:58:14 has no hits.
BO01044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:33 Download gff for
BO01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RB | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:33 Download gff for
BO01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RB | 73..855 | 8..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:44 Download gff for
BO01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1050..1826 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:33 Download gff for
BO01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RB | 73..855 | 8..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:03 Download gff for
BO01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Optix-RA | 1050..1826 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:03 Download gff for
BO01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8041221..8041997 | 17..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:44 Download gff for
BO01044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3928726..3929502 | 17..795 | 99 | | Plus |
BO01044.pep Sequence
Translation from 16 to 811
> BO01044.pep
MGCRSRRADGAASPTPSDSSDSDISLGTHSPVPSSLQLQHSPGSTSNGAN
DREESLSVDDDKPRDLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGA
GPGGPLTGPGCLPPFKLDAATSLFSAGCYLQSFSNLKEMSQQFPIQPIVL
RPHPQLPQSLALNGASGGPPLHHPAYAAAYSVECVPGGHGPPHPPPKLRI
NSPEKLNSTAVAAAASVGGGGGNQHHEPTTTGYHHSGQLMLHRPFSTSPE
LKHSAPEITASFLDH
BO01044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Optix-PB | 259 | CG18455-PB | 1..259 | 1..259 | 1397 | 100 | Plus |
Optix-PA | 487 | CG18455-PA | 229..487 | 1..259 | 1397 | 100 | Plus |
Optix-PC | 492 | CG18455-PC | 229..487 | 1..259 | 1397 | 100 | Plus |