Clone BO01044 Report

Search the DGRC for BO01044

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptOptix-RB
Protein status:BO01044.pep:
Sequenced Size:811

Clone Sequence Records

BO01044.3prime Sequence

809 bp (808 high quality bases) assembled on 2005-11-30

> BO01044.3prime
ATGGTCTAGAAAGCTTGCTGTGATCTCGGGAGCACTGTGCTTCAGCTCCG
GCGACGTGGAGAAGGGCCGATGCAGCATCAGTTGGCCACTGTGATGGTAG
CCGGTCGTGGTGGGCTCATGGTGTTGGTTGCCACCTCCTCCTCCGACGGA
TGCTGCCGCCGCCACTGCCGTGGAGTTGAGCTTCTCCGGGGAGTTTATCC
TCAGCTTCGGCGGCGGATGCGGTGGTCCATGACCACCTGGAACGCACTCC
ACACTGTAGGCAGCCGCGTAGGCCGGGTGATGCAGTGGCGGTCCGCCGGA
TGCGCCGTTCAGTGCCAGCGACTGCGGCAGCTGCGGATGCGGACGCAGGA
CAATCGGCTGGATGGGAAACTGCTGCGACATCTCCTTCAGGTTGCTGAAG
CTCTGCAGGTAACAGCCGGCGCTGAACAGACTGGTGGCCGCGTCCAGCTT
GAAGGGTGGCAGACAGCCCGGACCGGTCAGAGGTCCTCCGGGTCCTGCGC
CCGCCCCGCCCCCGTAGCCCGGCGGCAGTTGGGGCGGCGTGTGGGTGGGC
GAGGCCAGCGGCAGGGGCAGCGAGAGGGGCAGTGGCAGCGATCCGCTCAG
ATCCCGCGGCTTGTCGTCGTCCACGCTCAGGCTCTCCTCGCGGTCGTTGG
CGCCGTTGGAGGTGCTGCCCGGACTATGCTGCAGCTGCAGGCTGCTCGGC
ACCGGCGAGTGGGTGCCCAGTGAGATGTCCGAGTCGGAGCTGTCCGACGG
CGTTGGTGAGGCAGCTCCGTCCGCCCGCCGGCTCCGACAGCCCATGTCGA
CTGATAACT

BO01044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18455-PA 1464 Optix-RA 685..1461 795..19 3835 99.7 Minus
CG18455-PB 780 Optix-RB 1..777 795..19 3835 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1360..2136 795..19 3855 99.7 Minus
Optix-RB 1470 CG18455-RB 162..938 795..19 3855 99.7 Minus
Optix-RA 2358 CG18455-RA 1050..1826 795..19 3855 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041221..8041997 795..19 3855 99.7 Minus
Blast to na_te.dros performed on 2015-02-09 18:11:31 has no hits.

BO01044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:48 Download gff for BO01044.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-PB 1..780 16..795 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:10 Download gff for BO01044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-PB 1..780 16..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:18 Download gff for BO01044.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1826 19..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:08:47 Download gff for BO01044.3prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1826 19..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:08:47 Download gff for BO01044.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8041215..8041997 19..804 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:18 Download gff for BO01044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3928720..3929502 19..804 99   Minus

BO01044.5prime Sequence

809 bp (808 high quality bases) assembled on 2005-11-30

> BO01044.5prime
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACAGCAAGCT
TTCTAGACC

BO01044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18455-PA 1464 Optix-RA 685..1461 17..793 3835 99.7 Plus
CG18455-PB 780 Optix-RB 1..777 17..793 3835 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1360..2136 17..793 3855 99.7 Plus
Optix-RB 1470 CG18455-RB 162..938 17..793 3855 99.7 Plus
Optix-RA 2358 CG18455-RA 1050..1826 17..793 3855 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041221..8041997 17..793 3855 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 15:59:02 has no hits.

BO01044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:49 Download gff for BO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-PB 1..780 17..796 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:12 Download gff for BO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18455-PB 1..780 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:41 Download gff for BO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1826 8..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:34 Download gff for BO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1044..1826 8..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:34 Download gff for BO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8041215..8041997 8..793 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:41 Download gff for BO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3928720..3929502 8..793 99   Plus

BO01044.complete Sequence

811 bp (811 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629400

> BO01044.complete
GAAGTTATCAGTCGACATGGGCTGTCGGAGCCGGCGGGCGGACGGAGCTG
CCTCACCAACGCCGTCGGACAGCTCCGACTCGGACATCTCACTGGGCACC
CACTCGCCGGTGCCGAGCAGCCTGCAGCTGCAGCATAGTCCGGGCAGCAC
CTCCAACGGCGCCAACGACCGCGAGGAGAGCCTGAGCGTGGACGACGACA
AGCCGCGGGATCTGAGCGGATCGCTGCCACTGCCCCTCTCGCTGCCCCTG
CCGCTGGCCTCGCCCACCCACACGCCGCCCCAACTGCCGCCGGGCTACGG
GGGCGGGGCGGGCGCAGGACCCGGAGGACCTCTGACCGGTCCGGGCTGTC
TGCCACCCTTCAAGCTGGACGCGGCCACCAGTCTGTTCAGCGCCGGCTGT
TACCTGCAGAGCTTCAGCAACCTGAAGGAGATGTCGCAGCAGTTTCCCAT
CCAGCCGATTGTCCTGCGTCCGCATCCGCAGCTGCCGCAGTCGCTGGCAC
TGAACGGCGCATCCGGCGGACCGCCACTGCATCACCCGGCCTACGCGGCT
GCCTACAGTGTGGAGTGCGTTCCAGGTGGTCATGGACCACCGCATCCGCC
GCCGAAGCTGAGGATAAACTCCCCGGAGAAGCTCAACTCCACGGCAGTGG
CGGCGGCAGCATCCGTCGGAGGAGGAGGTGGCAACCAACACCATGAGCCC
ACCACGACCGGCTACCATCACAGTGGCCAACTGATGCTGCATCGGCCCTT
CTCCACGTCGCCGGAGCTGAAGCACAGTGCTCCCGAGATCACAGCAAGCT
TTCTAGACCAT

BO01044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 1479 CG18455-PC 685..1461 17..793 3855 99.7 Plus
Optix-RB 780 CG18455-PB 1..777 17..793 3855 99.7 Plus
Optix-RA 1464 CG18455-PA 685..1461 17..793 3855 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-RC 2668 CG18455-RC 1360..2136 17..793 3855 99.7 Plus
Optix-RB 1470 CG18455-RB 162..938 17..793 3855 99.7 Plus
Optix-RA 2358 CG18455-RA 1050..1826 17..793 3855 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8041221..8041997 17..793 3855 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 20:58:14 has no hits.

BO01044.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:33 Download gff for BO01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RB 1..780 17..796 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:33 Download gff for BO01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RB 73..855 8..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:44 Download gff for BO01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1050..1826 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:33 Download gff for BO01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RB 73..855 8..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:03 Download gff for BO01044.complete
Subject Subject Range Query Range Percent Splice Strand
Optix-RA 1050..1826 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:03 Download gff for BO01044.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8041221..8041997 17..795 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:44 Download gff for BO01044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3928726..3929502 17..795 99   Plus

BO01044.pep Sequence

Translation from 16 to 811

> BO01044.pep
MGCRSRRADGAASPTPSDSSDSDISLGTHSPVPSSLQLQHSPGSTSNGAN
DREESLSVDDDKPRDLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGA
GPGGPLTGPGCLPPFKLDAATSLFSAGCYLQSFSNLKEMSQQFPIQPIVL
RPHPQLPQSLALNGASGGPPLHHPAYAAAYSVECVPGGHGPPHPPPKLRI
NSPEKLNSTAVAAAASVGGGGGNQHHEPTTTGYHHSGQLMLHRPFSTSPE
LKHSAPEITASFLDH

BO01044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Optix-PB 259 CG18455-PB 1..259 1..259 1397 100 Plus
Optix-PA 487 CG18455-PA 229..487 1..259 1397 100 Plus
Optix-PC 492 CG18455-PC 229..487 1..259 1397 100 Plus