Clone Sequence Records
BO01046.3prime Sequence
870 bp (813 high quality bases) assembled on 2005-11-30
> BO01046.3prime
ATGGTCTAGAAAGCTTGCCATCGAAGGCAGATAGGGCCAGGAGAAACTGT
TGCCGCTCAGCAGCATATCGCGTATCAGCGTTTCAATTGGCGTTTTTCCG
ACTAGACGCACAAAAAACAATTGCTCAATGACTTGTGAGGAGACCGTTCG
CAGCGATGGCAGTCTGAGAAGCAGCTTGCCGAATCTCGTGGGCTGGTTGG
GATACTGGGTCCGGCAGTATTCCTCGAGGGCGCACTGCGACTTCTCTTGC
AGGGATTCAATGTGCGTCACATCGGACAGGCCGCAGGCATCGGTGGTGAA
GAGCACGATCGCCTTGAGGCAGGAGTACTCCGCGGAGTCGACATGCAGCG
CCTTCAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATGAAG
GCCACCACACGATCGGCGGCCATCGGGGAGGCATGAAGTCCGGCGGCGGC
CAGCAGTGGCGCCACATGGAGCGGCATGGAGCACTGGCTGGCGTTTAGGA
CGAAGAGCTCTGACCAGACGAGCCGGAGCAGGGCCACCTGGTCGGTCACC
TGCAGCTCCGGGAAGAAGGGTATGTTCTTGGCCCACTCGACCGCCGAGAA
GAGCAGTCGGGCGGCCAGTTCGCAGATGTTGTCGATGCCCATAATGTTGT
TGGGTTGCATGCACTGGCCATATCGCGAAGTCGGATACGGTTCCGCCCGC
AGCAGGAGCGAGATGTAGGAACTGAGGTACGAGTGCCCGTTAAAGCCGGC
AATGCCCATGGGATCCCCGTTGGCAATCTGGTACTGCCCATGCATGCCGG
CCAGACCGGGCTGAGTGGGTGGTACGCGTCCACGTTGAACAGCTTCGCGT
CTCATGCCCATGTCGACTGA
BO01046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PC | 846 | svp-RC | 1..843 | 861..19 | 4215 | 100 | Minus |
CG11502-PB | 1632 | svp-RB | 787..1629 | 861..19 | 4215 | 100 | Minus |
CG11502-PA | 2241 | svp-RA | 787..1357 | 861..291 | 2855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1230..2072 | 861..19 | 4215 | 100 | Minus |
svp-RB | 3859 | CG11502-RB | 1230..2072 | 861..19 | 4215 | 100 | Minus |
svp-RC | 2876 | CG11502-RC | 247..1089 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 844..291 | 2770 | 100 | Minus |
3R | 32079331 | 3R | 12300478..12300638 | 291..131 | 805 | 100 | Minus |
3R | 32079331 | 3R | 12300885..12300998 | 132..19 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 18:42:39 has no hits.
BO01046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:51 Download gff for
BO01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PC | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:18 Download gff for
BO01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 780..1632 | 16..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:10:53 Download gff for
BO01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 240..1089 | 19..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:25:59 Download gff for
BO01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 240..1089 | 19..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:25:59 Download gff for
BO01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12294008..12294559 | 291..842 | 100 | -> | Minus |
3R | 12300479..12300636 | 133..290 | 100 | -> | Minus |
3R | 12300885..12300998 | 19..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:10:53 Download gff for
BO01046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8119730..8120281 | 291..842 | 100 | -> | Minus |
arm_3R | 8126201..8126358 | 133..290 | 100 | -> | Minus |
arm_3R | 8126607..8126720 | 19..132 | 100 | | Minus |
BO01046.5prime Sequence
876 bp (836 high quality bases) assembled on 2005-11-30
> BO01046.5prime
GAAGTTATCAGTCGACATGGGCATGAGACGCGAAGCTGTTCAACGTGGAC
GCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAG
ATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTA
CCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTT
CGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAAC
ATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAA
GAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGC
TCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCC
ATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTC
CCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCT
TCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAG
TACTCCTGCCTCAAGGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCT
GTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCC
TCGAGGAATACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGC
AAGCTGCTTCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCAT
TGAGCAATTGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGC
TGATACGCGATATGCTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTG
CCTTCGATGGCAAGCTTTCTAGACCA
BO01046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PC | 846 | svp-RC | 1..843 | 17..859 | 4215 | 100 | Plus |
CG11502-PB | 1632 | svp-RB | 787..1629 | 17..859 | 4215 | 100 | Plus |
CG11502-PA | 2241 | svp-RA | 787..1357 | 17..587 | 2855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1230..2072 | 17..859 | 4215 | 100 | Plus |
svp-RB | 3859 | CG11502-RB | 1230..2072 | 17..859 | 4215 | 100 | Plus |
svp-RC | 2876 | CG11502-RC | 247..1089 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 34..587 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 12300478..12300638 | 587..747 | 805 | 100 | Plus |
3R | 32079331 | 3R | 12300885..12300998 | 746..859 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:15:19 has no hits.
BO01046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:52 Download gff for
BO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PC | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:19 Download gff for
BO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 782..1632 | 12..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:15 Download gff for
BO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 242..1089 | 12..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:03:41 Download gff for
BO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 242..1089 | 12..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:03:41 Download gff for
BO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290335..12290358 | 12..35 | 91 | -> | Plus |
3R | 12294008..12294559 | 36..587 | 100 | -> | Plus |
3R | 12300479..12300636 | 588..745 | 100 | -> | Plus |
3R | 12300885..12300998 | 746..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:15 Download gff for
BO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8116057..8116080 | 12..35 | 91 | -> | Plus |
arm_3R | 8119730..8120281 | 36..587 | 100 | -> | Plus |
arm_3R | 8126201..8126358 | 588..745 | 100 | -> | Plus |
arm_3R | 8126607..8126720 | 746..859 | 100 | | Plus |
BO01046.complete Sequence
877 bp (877 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629401
> BO01046.complete
GAAGTTATCAGTCGACATGGGCATGAGACGCGAAGCTGTTCAACGTGGAC
GCGTACCACCCACTCAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAG
ATTGCCAACGGGGATCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTA
CCTCAGTTCCTACATCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTT
CGCGATATGGCCAGTGCATGCAACCCAACAACATTATGGGCATCGACAAC
ATCTGCGAACTGGCCGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAA
GAACATACCCTTCTTCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGC
TCCGGCTCGTCTGGTCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCC
ATGCCGCTCCATGTGGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTC
CCCGATGGCCGCCGATCGTGTGGTGGCCTTCATGGACCACATCCGCATCT
TCCAGGAGCAGGTGGAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAG
TACTCCTGCCTCAAGGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCT
GTCCGATGTGACGCACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCC
TCGAGGAATACTGCCGGACCCAGTATCCCAACCAGCCCACGAGATTCGGC
AAGCTGCTTCTCAGACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCAT
TGAGCAATTGTTTTTTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGC
TGATACGCGATATGCTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTG
CCTTCGATGGCAAGCTTTCTAGACCAT
BO01046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 1665 | CG11502-PE | 787..1629 | 17..859 | 4215 | 100 | Plus |
svp-RB | 1632 | CG11502-PB | 787..1629 | 17..859 | 4215 | 100 | Plus |
svp-RC | 846 | CG11502-PC | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1230..2072 | 17..859 | 4215 | 100 | Plus |
svp-RB | 3859 | CG11502-RB | 1230..2072 | 17..859 | 4215 | 100 | Plus |
svp-RC | 2876 | CG11502-RC | 247..1089 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 34..587 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 12300478..12300638 | 587..747 | 805 | 100 | Plus |
3R | 32079331 | 3R | 12300885..12300998 | 746..859 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:37:36 has no hits.
BO01046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:01 Download gff for
BO01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 782..1632 | 12..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:52 Download gff for
BO01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 1230..2072 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:24 Download gff for
BO01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 247..1089 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:01 Download gff for
BO01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 1225..2072 | 12..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:49 Download gff for
BO01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 247..1089 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:49 Download gff for
BO01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290340..12290358 | 17..35 | 100 | -> | Plus |
3R | 12294008..12294559 | 36..587 | 100 | -> | Plus |
3R | 12300479..12300636 | 588..745 | 100 | -> | Plus |
3R | 12300885..12300998 | 746..861 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:24 Download gff for
BO01046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8116062..8116080 | 17..35 | 100 | -> | Plus |
arm_3R | 8119730..8120281 | 36..587 | 100 | -> | Plus |
arm_3R | 8126201..8126358 | 588..745 | 100 | -> | Plus |
arm_3R | 8126607..8126720 | 746..861 | 98 | | Plus |
BO01046.pep Sequence
Translation from 16 to 877
> BO01046.pep
MGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIAGFNGHSYLSSYI
SLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFF
PELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD
RVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTH
IESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF
VRLVGKTPIETLIRDMLLSGNSFSWPYLPSMASFLDH
BO01046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-PC | 281 | CG11502-PC | 1..281 | 1..281 | 1458 | 100 | Plus |
svp-PB | 543 | CG11502-PB | 263..543 | 1..281 | 1458 | 100 | Plus |
svp-PE | 554 | CG11502-PE | 263..543 | 1..281 | 1458 | 100 | Plus |
svp-PA | 746 | CG11502-PA | 263..452 | 1..190 | 986 | 100 | Plus |
dsf-PB | 691 | CG9019-PB | 449..681 | 41..266 | 381 | 37.2 | Plus |