Clone Sequence Records
BO01047.3prime Sequence
876 bp (827 high quality bases) assembled on 2005-11-30
> BO01047.3prime
ATGGTCTAGAAAGCTTGCATAGTAGGCCTCTTCGGTGGCCTCCGTTTGTG
GAGCTGGCTCCTCGGTGGCCGGCTCTGGAGGAGCGGAAGCTGCTGGCGAC
GGAACCTTCTGCGGAACAGGCGGCGACGGAGACTTCTGCAGCGCAGGCTC
CGGCTCACTCATCGGATCCGTGGCGGGACCTGTTGCCTCTGCGTCCGTGT
CTTTGGAGGGTCCGGGTTCACCGCGACCCGTGTTCAAAGGCGACGGAGGA
CGCGCAGTGGCCTGCACCTTGAACTGCTTCTCCGGCTTCTTCAGATCCTT
CGGCTTGCCCATCAGACGGTAGTCATTGGGCAATTCAGCCTCTGTGTATA
GCTTATCGGCGAAGTAGATGCGCCGGATGCGTACGTTGGCATGCAGCTGC
AAGGATACCGTCTCCAGATAGTTGGAGCCGTAAGCACGGCGCGTGAAGTC
GGCCAGGTTAAACTGGATCTGGTTCCAGCCCGGTGACATGCCCATCGGCA
TCGCCGTGCAGAAGGGCTTCACGGAGGTCTTGCTCTGGAAATTGGACACT
CGGAAACGGCGCATGAAGCGCTGATCGTCTTGAATCTTAACTTCGAAGCA
AAAGTACTTGTGCATGTTCTTTATAAGGAGCACCAGGAAGGGCAACTTGA
TGCCCAGCTGCTCCTTGCATTCGCTGGGGCAGTGTATGAATGTGGTGGAC
ACATTTGAGCCCATTATCTCGAGCACCAGGGACTTGATGTCCTCATCGTA
GATCCGTTTGATATACCCGTTTTTGGTATAGGAAGACCAGTTGTTCAGGG
GCGAACTGCCTACGCTGTAAAGCACGGTAAGGGAAACCTTTTTGATAGGC
TGCACGATACATGTCGACTGATAACT
BO01047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-PA | 846 | CG17118-RA | 30..843 | 832..19 | 3995 | 99.6 | Minus |
CG17118-PA | 846 | CG17118-RA | 1..31 | 862..832 | 155 | 100 | Minus |
CG5343-PA | 600 | CG5343-RA | 385..422 | 477..440 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 979 | CG17118-RA | 45..887 | 862..19 | 4150 | 99.5 | Minus |
Bug22-RA | 943 | CG5343-RA | 585..656 | 481..410 | 225 | 87.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10730696..10731264 | 587..19 | 2800 | 99.5 | Minus |
2L | 23513712 | 2L | 10730440..10730631 | 777..586 | 960 | 100 | Minus |
2L | 23513712 | 2L | 10730299..10730382 | 862..778 | 375 | 98.8 | Minus |
2L | 23513712 | 2L | 10430207..10430278 | 410..481 | 225 | 87.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:13:11 has no hits.
BO01047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:53 Download gff for
BO01047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..846 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:21 Download gff for
BO01047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..846 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:32:47 Download gff for
BO01047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..893 | 11..873 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:21 Download gff for
BO01047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..893 | 11..873 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:21 Download gff for
BO01047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10730286..10730382 | 778..873 | 94 | -> | Minus |
2L | 10730440..10730631 | 586..777 | 100 | -> | Minus |
2L | 10730698..10731270 | 11..585 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:32:47 Download gff for
BO01047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10730286..10730382 | 778..873 | 94 | -> | Minus |
arm_2L | 10730440..10730631 | 586..777 | 100 | -> | Minus |
arm_2L | 10730698..10731270 | 11..585 | 98 | | Minus |
BO01047.5prime Sequence
824 bp (686 high quality bases) assembled on 2005-11-30
> BO01047.5prime
GAAGTTATCAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTA
CCGTGCTTTACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTAT
ACCAAAAACGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCT
GGTGCTCGAGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCC
CCAGCGAATGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTC
CTTATAAAGAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGA
CGATCAGCGCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGA
CCTCCGTGAAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGC
TGGAACCAGATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGG
CTCCAACTATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCA
TCCGGCGCATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCC
AATGACTACCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAA
GCAGTTCAAGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGG
GTCGCGGTGAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGT
CCCGCCACGGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCC
GTCGCCGCCTGTTCCGCAGAAGGTTCCGTCGCCAGCAGCTTCCGCTCCTC
CAGAGCCGGCCACCGAGGAGCCAG
BO01047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-PA | 846 | CG17118-RA | 1..808 | 17..824 | 3965 | 99.6 | Plus |
CG5343-PA | 600 | CG5343-RA | 385..422 | 401..438 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 979 | CG17118-RA | 45..852 | 17..824 | 3995 | 99.6 | Plus |
Bug22-RA | 943 | CG5343-RA | 585..656 | 397..468 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10730696..10731229 | 291..824 | 2625 | 99.4 | Plus |
2L | 23513712 | 2L | 10730440..10730631 | 101..292 | 960 | 100 | Plus |
2L | 23513712 | 2L | 10730299..10730382 | 17..100 | 420 | 100 | Plus |
2L | 23513712 | 2L | 10430207..10430278 | 468..397 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:44:19 has no hits.
BO01047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:54 Download gff for
BO01047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:23 Download gff for
BO01047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-PA | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:50 Download gff for
BO01047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..852 | 6..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:22 Download gff for
BO01047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..852 | 6..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:22 Download gff for
BO01047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10730286..10730382 | 6..100 | 95 | -> | Plus |
2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
2L | 10730698..10731229 | 293..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:50 Download gff for
BO01047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10730286..10730382 | 6..100 | 95 | -> | Plus |
arm_2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
arm_2L | 10730698..10731229 | 293..824 | 99 | | Plus |
BO01047.complete Sequence
877 bp (877 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629402
> BO01047.complete
GAAGTTATCAGTCGACATGTATCGTGCAGCCTATCAAAAAGGTTTCCTTA
CCGTGCTTTACAGCGTAGGCAGTTCGCCCCTGAACAACTGGTCTTCCTAT
ACCAAAAACGGGTATATCAAACGGATCTACGATGAGGACATCAAGTCCCT
GGTGCTCGAGATAATGGGCTCAAATGTGTCCACCACATTCATACACTGCC
CCAGCGAATGCAAGGAGCAGCTGGGCATCAAGTTGCCCTTCCTGGTGCTC
CTTATAAAGAACATGCACAAGTACTTTTGCTTCGAAGTTAAGATTCAAGA
CGATCAGCGCTTCATGCGCCGTTTCCGAGTGTCCAATTTCCAGAGCAAGA
CCTCCGTGAAGCCCTTCTGCACGGCGATGCCGATGGGCATGTCACCGGGC
TGGAACCAGATCCAGTTTAACCTGGCCGACTTCACGCGCCGTGCTTACGG
CTCCAACTATCTGGAGACGGTATCCTTGCAGCTGCATGCCAACGTACGCA
TCCGGCGCATCTACTTCGCCGATAAGCTATACACAGAGGCTGAATTGCCC
AATGACTACCGTCTGATGGGCAAGCCGAAGGATCTGAAGAAGCCGGAGAA
GCAGTTCAAGGTGCAGGCCACTGCGCGTCCTCCGTCGCCTTTGAACACGG
GTCGCGGTGAACCCGGACCCTCCAAAGACACGGACGCAGAGGCAACAGGT
CCCGCCACGGATCCGATGAGTGAGCCGGAGCCTGCGCTGCAGAAGTCTCC
GTCGCCGCCTGTTCCGCAGAAGGTTCCGTCGCCAGCAGCTTCCGCTCCTC
CAGAGCCGGCCACCGAGGAGCCAGCTCCACAAACGGAGGCCACCGAAGAG
GCCTACTATGCAAGCTTTCTAGACCAT
BO01047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 846 | CG17118-PA | 1..843 | 17..859 | 4170 | 99.6 | Plus |
Bug22-RA | 600 | CG5343-PA | 381..452 | 397..468 | 225 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-RA | 979 | CG17118-RA | 45..887 | 17..859 | 4170 | 99.6 | Plus |
Bug22-RA | 943 | CG5343-RA | 585..656 | 397..468 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10730696..10731264 | 291..859 | 2800 | 99.5 | Plus |
2L | 23513712 | 2L | 10730440..10730631 | 101..292 | 960 | 100 | Plus |
2L | 23513712 | 2L | 10730299..10730382 | 17..100 | 420 | 100 | Plus |
2L | 23513712 | 2L | 10430207..10430278 | 468..397 | 225 | 87.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:21 has no hits.
BO01047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:34 Download gff for
BO01047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:36 Download gff for
BO01047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..893 | 6..867 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:44 Download gff for
BO01047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 45..887 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:34 Download gff for
BO01047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 32..893 | 6..867 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:15 Download gff for
BO01047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17118-RA | 45..887 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:15 Download gff for
BO01047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10730299..10730382 | 17..100 | 100 | -> | Plus |
2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
2L | 10730698..10731264 | 293..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:44 Download gff for
BO01047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10730299..10730382 | 17..100 | 100 | -> | Plus |
arm_2L | 10730440..10730631 | 101..292 | 100 | -> | Plus |
arm_2L | 10730698..10731264 | 293..861 | 99 | | Plus |
BO01047.pep Sequence
Translation from 16 to 877
> BO01047.pep
MYRAAYQKGFLTVLYSVGSSPLNNWSSYTKNGYIKRIYDEDIKSLVLEIM
GSNVSTTFIHCPSECKEQLGIKLPFLVLLIKNMHKYFCFEVKIQDDQRFM
RRFRVSNFQSKTSVKPFCTAMPMGMSPGWNQIQFNLADFTRRAYGSNYLE
TVSLQLHANVRIRRIYFADKLYTEAELPNDYRLMGKPKDLKKPEKQFKVQ
ATARPPSPLNTGRGEPGPSKDTDAEATGPATDPMSEPEPALQKSPSPPVP
QKVPSPAASAPPEPATEEPAPQTEATEEAYYASFLDH
BO01047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17118-PA | 281 | CG17118-PA | 1..281 | 1..281 | 1490 | 100 | Plus |
Bug22-PA | 199 | CG5343-PA | 1..183 | 1..183 | 642 | 62.8 | Plus |