Clone Sequence Records
BO01050.3prime Sequence
852 bp (808 high quality bases) assembled on 2005-11-30
> BO01050.3prime
ATGGTCTAGAAAGCTTGCCTTCATGTCAGTGCAAGTGAACTTGAGCTCGT
GCTTGCAGTACTTGGCCAAGCACTTGGAGTGATCGTGCAACTTGTTGCGC
ATGATGACGCAGCCGTTCCGGCTTATCGAGTCCATGTACTCGCTGAAGGT
CGGCACCTTCCGGTATGTGGTCGGGGCGGAGTTCCAGTGCGAACTGCTGC
CGGATTCGATGGTCTGCGAGGAGTCCGAGAAGCTGGTCTTGAATGGCTTG
TAGTTCTTTTGGCACTCGTCGCTAGACATCTCGTAGCCAGCGGACGCCTC
CCGCTCCAGTTCGTTCATCACGTTCGAGCGGAACTCGTTGCAGGGTCCAC
GTTCGCTCATCAGCTTGTTGGCGTTCTTGGACTCGTCCTCCGTCTTTAGG
CTCTCATAAATACCCTCCGGGTACTCGTTCATGTTACAGTAATCGATCTG
ATAGGTGGTGTTCATACGGTTGGTCTCCAGCCTGCGGCTCAGCTCCTCCT
TGGGCATGACCTTCAGGCGTTCATACAGATCCGGGTAGACTGTACGTAAG
ATCTTGAGAAAGCGGTTGGGTTGCAGCTTAAAGCAATCTGTTTCCGCGGA
GAAGGCCATCTTGTCCACCTGGTCCTGAGTCAGCTGGGTGGGTATGATAC
GCGGATCCACCAGCTTTCCCATTGGCGCTATGCCCGTCCACTCGACGCCG
CCACAGTCCTTAGACGCGTTCGGCGGCATCATGATCTTGGACTCGTCGAC
GCATTCGCACTCCTTGACCTGCGGACCACTGTGAGCCTCGGCGCCCCTGG
GCCGCGTTAGAAACTCGTACCGTTTGGCACTGGGCGGGACATAGTCGTGC
TG
BO01050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-PA | 855 | CG8813-RA | 19..852 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-RA | 998 | CG8813-RA | 113..946 | 852..19 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2869764..2870597 | 852..19 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:13:35 has no hits.
BO01050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:59 Download gff for
BO01050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-PA | 19..855 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:31 Download gff for
BO01050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-PA | 19..855 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:32:51 Download gff for
BO01050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 113..949 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:23 Download gff for
BO01050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 113..949 | 15..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:23 Download gff for
BO01050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2869764..2870600 | 15..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:32:51 Download gff for
BO01050.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2869764..2870600 | 15..852 | 99 | | Minus |
BO01050.5prime Sequence
841 bp (725 high quality bases) assembled on 2005-11-29
> BO01050.5prime
GAAGTTATCAGTCGACATGATGCTATCAACCTATCAGCACGACTATGTCC
CGCCCAGTGCCAAACGGTACGAGTTTCTAACGCGGCCCAGGGGCGCCGAG
GCTCACAGTGGTCCGCAGGTCAAGGAGTGCGAATGCGTCGACGAGTCCAA
GATCATGATGCCGCCGAACGCGTCTAAGGACTGTGGCGGCGTCGAGTGGA
CGGGCATAGCGCCAATGGGAAAGCTGGTGGATCCGCGTATCATACCCACC
CAGCTGACTCAGGACCAGGTGGACAAGATGGCCTTCTCCGCGGAAACAGA
TTGCTTTAAGCTGCAACCCAACCGCTTTCTCAAGATCTTACGTACAGTCT
ACCCGGATCTGTATGAACGCCTGAAGGTCATGCCCAAGGAGGAGCTGAGC
CGCAGGCTGGAGACCAACCGTATGAACACCACCTATCAGATCGATTACTG
TAACATGAACGAGTACCCGGAGGGTATTTATGAGAGCCTAAAGACGGAGG
ACGAGTCCAAGAACGCCAACAAGCTGATGAGCGAACGTGGACCCTGCAAC
GAGTTCCGCTCGAACGTGATGAACGAACTGGAGCGGGAGGCGTCCGCTGG
CTACGAGATGTCTAGCGACGAGTGCCAAAAGAACTACAAGCCATTCAAGA
CCAGCTTCTCGGACTCCTCGCAGACCATCGAATCCGGCAGCAGTTCGCAC
TGGAACTCCGCCCCGACCACATACCGGAAGGTGCCGACCTTCAGCGAGTA
CATGGACTCGATAAGCCGGAACGGCTGCGTCATCATGCGCAAACAGTTGC
ACGATCACTCCNAGTGCTTGGNCAAGTACTGCAAGCACGAG
BO01050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-PA | 855 | CG8813-RA | 1..825 | 17..841 | 4037 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-RA | 998 | CG8813-RA | 95..919 | 17..841 | 4073 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2869746..2870570 | 17..841 | 4073 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:14:10 has no hits.
BO01050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:21:59 Download gff for
BO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:32 Download gff for
BO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:32:53 Download gff for
BO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 86..919 | 4..841 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:28 Download gff for
BO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 86..919 | 4..841 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:28 Download gff for
BO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2869737..2870570 | 4..841 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:32:53 Download gff for
BO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2869737..2870570 | 4..841 | 98 | | Plus |
BO01050.complete Sequence
886 bp (886 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629403
> BO01050.complete
GAAGTTATCAGTCGACATGATGCTATCAACCTATCAGCACGACTATGTCC
CGCCCAGTGCCAAACGGTACGAGTTTCTAACGCGGCCCAGGGGCGCCGAG
GCTCACAGTGGTCCGCAGGTCAAGGAGTGCGAATGCGTCGACGAGTCCAA
GATCATGATGCCGCCGAACGCGTCTAAGGACTGTGGCGGCGTCGAGTGGA
CGGGCATAGCGCCAATGGGAAAGCTGGTGGATCCGCGTATCATACCCACC
CAGCTGACTCAGGACCAGGTGGACAAGATGGCCTTCTCCGCGGAAACAGA
TTGCTTTAAGCTGCAACCCAACCGCTTTCTCAAGATCTTACGTACAGTCT
ACCCGGATCTGTATGAACGCCTGAAGGTCATGCCCAAGGAGGAGCTGAGC
CGCAGGCTGGAGACCAACCGTATGAACACCACCTATCAGATCGATTACTG
TAACATGAACGAGTACCCGGAGGGTATTTATGAGAGCCTAAAGACGGAGG
ACGAGTCCAAGAACGCCAACAAGCTGATGAGCGAACGTGGACCCTGCAAC
GAGTTCCGCTCGAACGTGATGAACGAACTGGAGCGGGAGGCGTCCGCTGG
CTACGAGATGTCTAGCGACGAGTGCCAAAAGAACTACAAGCCATTCAAGA
CCAGCTTCTCGGACTCCTCGCAGACCATCGAATCCGGCAGCAGTTCGCAC
TGGAACTCCGCCCCGACCACATACCGGAAGGTGCCGACCTTCAGCGAGTA
CATGGACTCGATAAGCCGGAACGGCTGCGTCATCATGCGCAACAAGTTGC
ACGATCACTCCAAGTGCTTGGCCAAGTACTGCAAGCACGAGCTCAAGTTC
ACTTGCACTGACATGAAGGCAAGCTTTCTAGACCAT
BO01050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-RA | 855 | CG8813-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-RA | 998 | CG8813-RA | 95..946 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2869746..2870597 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:59:21 has no hits.
BO01050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:35 Download gff for
BO01050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:37 Download gff for
BO01050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 86..949 | 4..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:27 Download gff for
BO01050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 95..946 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:36 Download gff for
BO01050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 86..949 | 4..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:36 Download gff for
BO01050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8813-RA | 95..946 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:36 Download gff for
BO01050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2869746..2870597 | 17..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:27 Download gff for
BO01050.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2869746..2870597 | 17..870 | 99 | | Plus |
BO01050.pep Sequence
Translation from 16 to 886
> BO01050.pep
MMLSTYQHDYVPPSAKRYEFLTRPRGAEAHSGPQVKECECVDESKIMMPP
NASKDCGGVEWTGIAPMGKLVDPRIIPTQLTQDQVDKMAFSAETDCFKLQ
PNRFLKILRTVYPDLYERLKVMPKEELSRRLETNRMNTTYQIDYCNMNEY
PEGIYESLKTEDESKNANKLMSERGPCNEFRSNVMNELEREASAGYEMSS
DECQKNYKPFKTSFSDSSQTIESGSSSHWNSAPTTYRKVPTFSEYMDSIS
RNGCVIMRNKLHDHSKCLAKYCKHELKFTCTDMKASFLDH
BO01050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8813-PA | 284 | CG8813-PA | 1..284 | 1..284 | 1529 | 100 | Plus |
