Clone Sequence Records
BO01052.3prime Sequence
899 bp (824 high quality bases) assembled on 2005-11-30
> BO01052.3prime
ATGGTCTAGAAAGCTTGCTTGGTCTGTCGAGTTCGGCGGCACCGTGCAGC
CCGCGGCAATGTGCTCCATCACCTGCTGCTTCAGCTGCGCCACATGGTCC
TTGAGGTTCTTCACGATGCTAGCCAGGTCGACGTTCTCGCCCTTAAGTAC
CTTCACGCGATCCTCCAGCTTTGAGATGCGCTCCAACTTGCGCTTGCGGC
ACTTGGATGCAGCCACACGGTTACGCTGCCTCTTGCGCTCCAGCTTGATC
TTCTCCTGCGCTTCCATGTCAATGGGATTAACGGTGGGCGAGCTGGCTTG
ATTGACGGGCTCGTCCTTAATCACCGAGAAGCCCTCGGTCATGTTGGTGT
AGGTGAAGGTGCCTCCGCTGATGCCATTGTTCACCGCTGTCATGGCTGCC
GCAGTTGTGTTATTGGCGGCGGAATTAGCGGCGGAATTGGCGGACGGAAA
TGCCTGGGAGTTAGTGTGAAGATTGTGTAAGGCCTCCTCGAATCCCCTGC
CGAAGTCCAACTGCTCCACGGTGACGGGCCCCGCCTTGGTGGGGAACACC
TTTCCCGGCTGCGGTGTTTGCATCAGATTGTTGGATAGCAGGATCTTCTC
CAAATCGGGTGTGTTTACCGTCTTGGATGACAGATCCGGTGAGTTGATGA
CCAGTGGTGCGAAGATGCGCTTGTTCTTGGCACTCTTGCTGTTCAGATCC
AGCGAGCCGGGACGCTTGTTAGGATTCGGGGTGGATGTGTTCAGGTTCGG
CGACTGAAAGTCCAGTGACATGGGGCCTTCTTCTCCAACGGGCTCGGTTT
TAGGTATGATCTGAATGGCAGTTGCTCGGGAACTGCCAGCATTCTGAATA
CTTAAGTTCGCAGCAGCGGAAACGGGGGTTTTCATGTCGACTGATAACT
BO01052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2275-PB | 870 | Jra-RB | 1..867 | 885..19 | 4310 | 99.8 | Minus |
CG2275-PA | 870 | Jra-RA | 1..867 | 885..19 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1525 | CG2275-RC | 234..1102 | 887..19 | 4330 | 99.9 | Minus |
Jra-RA | 1525 | CG2275-RA | 234..1102 | 887..19 | 4330 | 99.9 | Minus |
Jra-RB | 1565 | CG2275-RB | 274..1142 | 887..19 | 4330 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10097265..10098133 | 887..19 | 4330 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:58 has no hits.
BO01052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:02 Download gff for
BO01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-PB | 1..870 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:37 Download gff for
BO01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2275-PA | 1..870 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:07 Download gff for
BO01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1149 | 10..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:14 Download gff for
BO01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1149 | 10..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:14 Download gff for
BO01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10097267..10098140 | 10..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:07 Download gff for
BO01052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5984772..5985645 | 10..885 | 99 | | Minus |
BO01052.5prime Sequence
859 bp (790 high quality bases) assembled on 2005-11-29
> BO01052.5prime
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCCCT
CAGGACATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACG
BO01052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2275-PB | 870 | Jra-RB | 1..781 | 17..797 | 3905 | 100 | Plus |
CG2275-PA | 870 | Jra-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
CG2275-PB | 870 | Jra-RB | 790..843 | 806..859 | 270 | 100 | Plus |
CG2275-PA | 870 | Jra-RA | 790..843 | 806..859 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1525 | CG2275-RC | 234..1078 | 15..859 | 4150 | 99.5 | Plus |
Jra-RA | 1525 | CG2275-RA | 234..1078 | 15..859 | 4150 | 99.5 | Plus |
Jra-RB | 1565 | CG2275-RB | 274..1118 | 15..859 | 4150 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10097265..10098109 | 15..859 | 4135 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:57:56 has no hits.
BO01052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:03 Download gff for
BO01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-PB | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:39 Download gff for
BO01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2275-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:13 Download gff for
BO01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1118 | 10..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:36 Download gff for
BO01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 269..1118 | 10..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:36 Download gff for
BO01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10097267..10098109 | 17..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:13 Download gff for
BO01052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5984772..5985614 | 17..859 | 99 | | Plus |
BO01052.complete Sequence
901 bp (901 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629404
> BO01052.complete
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCA
AGGACCATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACGGTGCCGCCGAACTCGACAGACCAAGCAAGCTTTCTAGACCA
T
BO01052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1119 | CG2275-PC | 1..867 | 17..883 | 4335 | 100 | Plus |
Jra-RA | 870 | CG2275-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Jra-RB | 870 | CG2275-PB | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-RC | 1525 | CG2275-RC | 234..1102 | 15..883 | 4345 | 100 | Plus |
Jra-RA | 1525 | CG2275-RA | 234..1102 | 15..883 | 4345 | 100 | Plus |
Jra-RB | 1565 | CG2275-RB | 274..1142 | 15..883 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10097265..10098133 | 15..883 | 4345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:02:23 has no hits.
BO01052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:37 Download gff for
BO01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RA | 1..870 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:39 Download gff for
BO01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RA | 220..1100 | 10..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:25 Download gff for
BO01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 276..1142 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:37 Download gff for
BO01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RA | 220..1100 | 10..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:31 Download gff for
BO01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jra-RB | 276..1142 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:31 Download gff for
BO01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10097267..10098133 | 17..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:25 Download gff for
BO01052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5984772..5985638 | 17..885 | 99 | | Plus |
BO01052.pep Sequence
Translation from 16 to 901
> BO01052.pep
MKTPVSAAANLSIQNAGSSGATAIQIIPKTEPVGEEGPMSLDFQSPNLNT
STPNPNKRPGSLDLNSKSAKNKRIFAPLVINSPDLSSKTVNTPDLEKILL
SNNLMQTPQPGKVFPTKAGPVTVEQLDFGRGFEEALHNLHTNSQAFPSAN
SAANSAANNTTAAAMTAVNNGISGGTFTYTNMTEGFSVIKDEPVNQASSP
TVNPIDMEAQEKIKLERKRQRNRVAASKCRKRKLERISKLEDRVKVLKGE
NVDLASIVKNLKDHVAQLKQQVMEHIAAGCTVPPNSTDQASFLDH
BO01052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jra-PA | 289 | CG2275-PA | 1..289 | 1..289 | 1462 | 100 | Plus |
Jra-PB | 289 | CG2275-PB | 1..289 | 1..289 | 1462 | 100 | Plus |
Jra-PC | 372 | CG2275-PC | 1..289 | 1..289 | 1462 | 100 | Plus |