Clone BO01052 Report

Search the DGRC for BO01052

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptJra-RA
Protein status:BO01052.pep: full length peptide match
Sequenced Size:901

Clone Sequence Records

BO01052.3prime Sequence

899 bp (824 high quality bases) assembled on 2005-11-30

> BO01052.3prime
ATGGTCTAGAAAGCTTGCTTGGTCTGTCGAGTTCGGCGGCACCGTGCAGC
CCGCGGCAATGTGCTCCATCACCTGCTGCTTCAGCTGCGCCACATGGTCC
TTGAGGTTCTTCACGATGCTAGCCAGGTCGACGTTCTCGCCCTTAAGTAC
CTTCACGCGATCCTCCAGCTTTGAGATGCGCTCCAACTTGCGCTTGCGGC
ACTTGGATGCAGCCACACGGTTACGCTGCCTCTTGCGCTCCAGCTTGATC
TTCTCCTGCGCTTCCATGTCAATGGGATTAACGGTGGGCGAGCTGGCTTG
ATTGACGGGCTCGTCCTTAATCACCGAGAAGCCCTCGGTCATGTTGGTGT
AGGTGAAGGTGCCTCCGCTGATGCCATTGTTCACCGCTGTCATGGCTGCC
GCAGTTGTGTTATTGGCGGCGGAATTAGCGGCGGAATTGGCGGACGGAAA
TGCCTGGGAGTTAGTGTGAAGATTGTGTAAGGCCTCCTCGAATCCCCTGC
CGAAGTCCAACTGCTCCACGGTGACGGGCCCCGCCTTGGTGGGGAACACC
TTTCCCGGCTGCGGTGTTTGCATCAGATTGTTGGATAGCAGGATCTTCTC
CAAATCGGGTGTGTTTACCGTCTTGGATGACAGATCCGGTGAGTTGATGA
CCAGTGGTGCGAAGATGCGCTTGTTCTTGGCACTCTTGCTGTTCAGATCC
AGCGAGCCGGGACGCTTGTTAGGATTCGGGGTGGATGTGTTCAGGTTCGG
CGACTGAAAGTCCAGTGACATGGGGCCTTCTTCTCCAACGGGCTCGGTTT
TAGGTATGATCTGAATGGCAGTTGCTCGGGAACTGCCAGCATTCTGAATA
CTTAAGTTCGCAGCAGCGGAAACGGGGGTTTTCATGTCGACTGATAACT

BO01052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2275-PB 870 Jra-RB 1..867 885..19 4310 99.8 Minus
CG2275-PA 870 Jra-RA 1..867 885..19 4310 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1525 CG2275-RC 234..1102 887..19 4330 99.9 Minus
Jra-RA 1525 CG2275-RA 234..1102 887..19 4330 99.9 Minus
Jra-RB 1565 CG2275-RB 274..1142 887..19 4330 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10097265..10098133 887..19 4330 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 10:08:58 has no hits.

BO01052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:02 Download gff for BO01052.3prime
Subject Subject Range Query Range Percent Splice Strand
Jra-PB 1..870 15..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:37 Download gff for BO01052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2275-PA 1..870 15..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:07 Download gff for BO01052.3prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1149 10..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:14 Download gff for BO01052.3prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1149 10..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:14 Download gff for BO01052.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10097267..10098140 10..885 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:07 Download gff for BO01052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5984772..5985645 10..885 99   Minus

BO01052.5prime Sequence

859 bp (790 high quality bases) assembled on 2005-11-29

> BO01052.5prime
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCCCT
CAGGACATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACG

BO01052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2275-PB 870 Jra-RB 1..781 17..797 3905 100 Plus
CG2275-PA 870 Jra-RA 1..781 17..797 3905 100 Plus
CG2275-PB 870 Jra-RB 790..843 806..859 270 100 Plus
CG2275-PA 870 Jra-RA 790..843 806..859 270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1525 CG2275-RC 234..1078 15..859 4150 99.5 Plus
Jra-RA 1525 CG2275-RA 234..1078 15..859 4150 99.5 Plus
Jra-RB 1565 CG2275-RB 274..1118 15..859 4150 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10097265..10098109 15..859 4135 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 00:57:56 has no hits.

BO01052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:03 Download gff for BO01052.5prime
Subject Subject Range Query Range Percent Splice Strand
Jra-PB 1..843 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:39 Download gff for BO01052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2275-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:13 Download gff for BO01052.5prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1118 10..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:36 Download gff for BO01052.5prime
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 269..1118 10..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:36 Download gff for BO01052.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10097267..10098109 17..859 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:13 Download gff for BO01052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5984772..5985614 17..859 99   Plus

BO01052.complete Sequence

901 bp (901 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629404

> BO01052.complete
GAAGTTATCAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAA
GTATTCAGAATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCT
AAAACCGAGCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTC
GCCGAACCTGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGC
TGGATCTGAACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTG
GTCATCAACTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTT
GGAGAAGATCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAA
AGGTGTTCCCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTC
GGCAGGGGATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGC
ATTTCCGTCCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTG
CGGCAGCCATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACC
TACACCAACATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAA
TCAAGCCAGCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGA
AGATCAAGCTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAG
TGCCGCAAGCGCAAGTTGGAGCGCATCTCAAAGCTGGAGGATCGCGTGAA
GGTACTTAAGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCA
AGGACCATGTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCG
GGCTGCACGGTGCCGCCGAACTCGACAGACCAAGCAAGCTTTCTAGACCA
T

BO01052.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1119 CG2275-PC 1..867 17..883 4335 100 Plus
Jra-RA 870 CG2275-PA 1..867 17..883 4335 100 Plus
Jra-RB 870 CG2275-PB 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-RC 1525 CG2275-RC 234..1102 15..883 4345 100 Plus
Jra-RA 1525 CG2275-RA 234..1102 15..883 4345 100 Plus
Jra-RB 1565 CG2275-RB 274..1142 15..883 4345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10097265..10098133 15..883 4345 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:02:23 has no hits.

BO01052.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:37 Download gff for BO01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RA 1..870 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:39 Download gff for BO01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RA 220..1100 10..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:25 Download gff for BO01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 276..1142 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:37 Download gff for BO01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RA 220..1100 10..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:31 Download gff for BO01052.complete
Subject Subject Range Query Range Percent Splice Strand
Jra-RB 276..1142 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:31 Download gff for BO01052.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10097267..10098133 17..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:25 Download gff for BO01052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5984772..5985638 17..885 99   Plus

BO01052.pep Sequence

Translation from 16 to 901

> BO01052.pep
MKTPVSAAANLSIQNAGSSGATAIQIIPKTEPVGEEGPMSLDFQSPNLNT
STPNPNKRPGSLDLNSKSAKNKRIFAPLVINSPDLSSKTVNTPDLEKILL
SNNLMQTPQPGKVFPTKAGPVTVEQLDFGRGFEEALHNLHTNSQAFPSAN
SAANSAANNTTAAAMTAVNNGISGGTFTYTNMTEGFSVIKDEPVNQASSP
TVNPIDMEAQEKIKLERKRQRNRVAASKCRKRKLERISKLEDRVKVLKGE
NVDLASIVKNLKDHVAQLKQQVMEHIAAGCTVPPNSTDQASFLDH

BO01052.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Jra-PA 289 CG2275-PA 1..289 1..289 1462 100 Plus
Jra-PB 289 CG2275-PB 1..289 1..289 1462 100 Plus
Jra-PC 372 CG2275-PC 1..289 1..289 1462 100 Plus