Clone Sequence Records
BO01054.3prime Sequence
815 bp (806 high quality bases) assembled on 2005-11-30
> BO01054.3prime
ATGGTCTAGAAAGCTTGCGACTGAATAGAAGTGCGAGTTGAATCTTGTGC
GGCACGAGGGCTCCGTGAATGGTGAAAACCAGGCCAACGAGAAGCGTCCG
AACACCGACTGGATGCTCTTGAGGCGCGATTTCTTCGCCCAGCGGGCCTC
CTCCTTCTTCAGCTGTTCGATGCCCGTCTGATCGTTTAGGATAGCCGTCA
GCTGAGTGGCCAGCATGATGATGGTGAATATGCCGAACATAAGGCCCTCA
AAGGTGAGAAAAAGCAGCAGGAATATAGTGGCCGGCGGAGAGTACGGCGA
GCAGGTGCGCCAGTCGTTTTTCACGCACTCCGCGAACTGGGTGAGCACCA
GGAAGAGCGTGTGCACGGAGATCGAAGCGATATAGAAGGTGAAGAGCACA
AAGTACTTTTGATTGTTCTCGCCCACGCAATTATTTACCCACGGACAGTG
GTGATCCATCTTGCGGATGCAGCGCTGGCAGACGGAACAGTGATGAGCTC
GTTCCGGCTTGATACTGCAGCACTTGGGGCACTTGTAGAACATCTGACCC
TCGCGGTAGCCCATCTGCTCGATCATCTCCTTGGTGGCATTTCCGCGCGG
TACAGCGCCCGGATCCGAGAGCATTGTGCGTATGTGCGAGGCGAAGGCCA
GGAAGGCGAGTGCCTGGAATATGATCATGTTGATGGTACTGAAGACGGTA
TAGTTGCTGGGCAGAAGGATCAGCCGCATGACCACGAATTCGGCGAACAG
GATAAGCAGCCAGGTCATGATTACGCACACAATGCCGCAGATGTCCTTGA
CGCACCAGGCCCTTG
BO01054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-PA | 882 | CG8314-RA | 87..879 | 811..19 | 3965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 1280 | CG8314-RA | 227..1019 | 811..19 | 3965 | 100 | Minus |
CG5880-RA | 1526 | CG5880-RA | 587..662 | 497..422 | 200 | 84.2 | Minus |
Dnz1-RA | 1949 | CG6627-RA | 705..806 | 502..401 | 180 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15990452..15990674 | 388..610 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 15990169..15990382 | 174..387 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 15990858..15991060 | 609..811 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 15989944..15990100 | 19..175 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:41:59 has no hits.
BO01054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:04 Download gff for
BO01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 84..882 | 16..815 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:41 Download gff for
BO01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 84..882 | 16..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:31:48 Download gff for
BO01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 224..1019 | 19..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:31 Download gff for
BO01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 224..1019 | 19..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:31 Download gff for
BO01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15990859..15991063 | 610..815 | 99 | | Plus |
2R | 15989944..15990099 | 19..174 | 100 | <- | Plus |
2R | 15990170..15990382 | 175..387 | 100 | <- | Plus |
2R | 15990452..15990673 | 388..609 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:31:48 Download gff for
BO01054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11877449..11877604 | 19..174 | 100 | <- | Plus |
arm_2R | 11877675..11877887 | 175..387 | 100 | <- | Plus |
arm_2R | 11877957..11878178 | 388..609 | 100 | <- | Plus |
arm_2R | 11878364..11878568 | 610..815 | 99 | | Plus |
BO01054.5prime Sequence
858 bp (824 high quality bases) assembled on 2005-11-30
> BO01054.5prime
GAAGTTATCAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCG
GTAGCGGAGGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAAC
AAGGCCTGGTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGAC
CTGGCTGCTTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTC
TGCCCAGCAACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAG
GCACTCGCCTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGA
TCCGGGCGCTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGA
TGGGCTACCGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGT
ATCAAGCCGGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCG
CAAGATGGATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACA
ATCAAAAGTACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTG
CACACGCTCTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGA
CTGGCGCACCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGC
TTTTTCTCACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATG
CTGGCCACTCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACA
GCTGAAGAAGGAGGAGGCCCGCTGGGCGAAGAAATCGCGCCCTCAGAGCA
TCCAGTCGGTGTTCGGACGCTTCTCGTTGGCCTGGTTTTCACCATTCACG
GAGCCCTC
BO01054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-PA | 882 | CG8314-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
CG8314-PA | 882 | CG8314-RA | 779..842 | 795..858 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 1280 | CG8314-RA | 140..982 | 16..858 | 4170 | 99.8 | Plus |
CG5880-RA | 1526 | CG5880-RA | 587..662 | 417..492 | 200 | 84.2 | Plus |
Dnz1-RA | 1949 | CG6627-RA | 705..806 | 412..513 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15990858..15991147 | 305..16 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 15990452..15990674 | 526..304 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 15990169..15990382 | 740..527 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 15989981..15990100 | 858..739 | 555 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:09:05 has no hits.
BO01054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:05 Download gff for
BO01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:43 Download gff for
BO01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:09 Download gff for
BO01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 140..982 | 16..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:33 Download gff for
BO01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 140..982 | 16..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:33 Download gff for
BO01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15989981..15990099 | 740..858 | 98 | <- | Minus |
2R | 15990170..15990382 | 527..739 | 100 | <- | Minus |
2R | 15990452..15990673 | 305..526 | 100 | <- | Minus |
2R | 15990859..15991147 | 16..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:09 Download gff for
BO01054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11877486..11877604 | 740..858 | 98 | <- | Minus |
arm_2R | 11877675..11877887 | 527..739 | 100 | <- | Minus |
arm_2R | 11877957..11878178 | 305..526 | 100 | <- | Minus |
arm_2R | 11878364..11878652 | 16..304 | 100 | | Minus |
BO01054.complete Sequence
913 bp (913 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629405
> BO01054.complete
GAAGTTATCAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCG
GTAGCGGAGGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAAC
AAGGCCTGGTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGAC
CTGGCTGCTTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTC
TGCCCAGCAACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAG
GCACTCGCCTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGA
TCCGGGCGCTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGA
TGGGCTACCGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGT
ATCAAGCCGGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCG
CAAGATGGATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACA
ATCAAAAGTACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTG
CACACGCTCTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGA
CTGGCGCACCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGC
TTTTTCTCACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATG
CTGGCCACTCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACA
GCTGAAGAAGGAGGAGGCCCGCTGGGCGAAGAAATCGCGCCTCAAGAGCA
TCCAGTCGGTGTTCGGACGCTTCTCGTTGGCCTGGTTTTCACCATTCACG
GAGCCCTCGTGCCGCACAAGATTCAACTCGCACTTCTATTCAGTCGCAAG
CTTTCTAGACCAT
BO01054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 882 | CG8314-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
CG5880-RA | 1146 | CG5880-PA | 449..524 | 417..492 | 200 | 84.2 | Plus |
Dnz1-RA | 831 | CG6627-PA | 339..440 | 412..513 | 180 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-RA | 1280 | CG8314-RA | 140..1019 | 16..895 | 4400 | 100 | Plus |
CG5880-RA | 1526 | CG5880-RA | 587..662 | 417..492 | 200 | 84.2 | Plus |
Dnz1-RA | 1949 | CG6627-RA | 705..806 | 412..513 | 180 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15990858..15991147 | 305..16 | 1450 | 100 | Minus |
2R | 25286936 | 2R | 15990452..15990674 | 526..304 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 15990169..15990382 | 740..527 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 15989944..15990100 | 895..739 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:18:02 has no hits.
BO01054.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:38 Download gff for
BO01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:41 Download gff for
BO01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 136..1015 | 16..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:30 Download gff for
BO01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 141..1019 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:38 Download gff for
BO01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 136..1015 | 16..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:59 Download gff for
BO01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8314-RA | 141..1019 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:59 Download gff for
BO01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15989941..15990099 | 740..897 | 98 | <- | Minus |
2R | 15990170..15990382 | 527..739 | 100 | <- | Minus |
2R | 15990452..15990673 | 305..526 | 100 | <- | Minus |
2R | 15990859..15991146 | 17..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:30 Download gff for
BO01054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11877446..11877604 | 740..897 | 98 | <- | Minus |
arm_2R | 11877675..11877887 | 527..739 | 100 | <- | Minus |
arm_2R | 11877957..11878178 | 305..526 | 100 | <- | Minus |
arm_2R | 11878364..11878651 | 17..304 | 100 | | Minus |
BO01054.pep Sequence
Translation from 16 to 913
> BO01054.pep
MNYSYSALSPGGSGGFGGVDQHNRCCGNKAWCVKDICGIVCVIMTWLLIL
FAEFVVMRLILLPSNYTVFSTINMIIFQALAFLAFASHIRTMLSDPGAVP
RGNATKEMIEQMGYREGQMFYKCPKCCSIKPERAHHCSVCQRCIRKMDHH
CPWVNNCVGENNQKYFVLFTFYIASISVHTLFLVLTQFAECVKNDWRTCS
PYSPPATIFLLLFLTFEGLMFGIFTIIMLATQLTAILNDQTGIEQLKKEE
ARWAKKSRLKSIQSVFGRFSLAWFSPFTEPSCRTRFNSHFYSVASFLDH
BO01054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8314-PA | 293 | CG8314-PA | 1..293 | 1..293 | 1588 | 100 | Plus |
Dnz1-PA | 276 | CG6627-PA | 4..267 | 33..287 | 424 | 32.2 | Plus |
CG1407-PF | 449 | CG1407-PF | 10..295 | 34..276 | 269 | 27.6 | Plus |
CG1407-PG | 452 | CG1407-PG | 10..298 | 34..276 | 269 | 27.2 | Plus |
CG1407-PE | 440 | CG1407-PE | 10..286 | 34..276 | 266 | 27.2 | Plus |