Clone Sequence Records
BO01056.3prime Sequence
871 bp (798 high quality bases) assembled on 2005-11-30
> BO01056.3prime
ATGGTCTAGAAAGCTTGCCTTTCCTTGACACTTACCAAACTGACTTCGCA
TCCAGGGATACAGTGGAGACGGCATCCCCGAGGACTGCGAGTTCGGGTTT
TGGGAAGGAGGCGTGTGTTGGCCAGGATGTCCCTGGTGCATCTGTGGAGG
ACCCTGGCCCTGGTGCATCATGCCCTGAGGTGGGGCACCCACCGGCGGAA
CTCCCGACTGCTGCTGGTACATGCCCATGTTGTGATGGTTCTGATGGACC
TCTGTCACGTCGGGAACTCCAACGTCCGTATAGCCCAACTGCGCCTGCGG
ATGTCCCATGTGATGGGGCAGCGTCATCTGGGCGTTCATGTGGTGACCGG
ACATTTGATCCACCAGCGGAGGCGATCCGCCCTCGGGAACCATACCCAGT
CCACCAACGGCCGCTTGCAACTTGCAGCTGGCGTAGACGACGGGCTGCTG
TTGTTGCTGCTGCGGATGTGTCACCTGTTGCGTCACCTGCGGCAGCTGCT
GCTGCAGTTGCTGTGGGGCCTGCTGCGCCTGCTGTTGCTGCTGGTTCTGC
GAGGGCTGTTGCTGCTGCTGCTGTTGCTGCTGGGGAACACCCAACTGACC
GTTGGTCTGCGCCTGGGGCATGACCCCGCCCACCTGGCTGGAGGGGCTGT
CCGGGCGGGAGTAGACCTGGTGCTGCTGCTGCTGGTCCATCCCCTGGCCG
TTGTAGTAGGGCATGCGGTCGTAGGGTGGAAAGCGCGGGTAGGGCATGTT
GCCCTGGTGATTCGCGTTCTGGCTGTAGTGGTGCATCTGCTGGGCGTCCA
GGTCGGTGACCCCGTTGCCCGGGTAGTGCCCATGATGCATGTCCGCCCCC
ATGTACGAGTTGGTGAAGTAC
BO01056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1028-PH | 894 | Antp-RH | 39..891 | 871..19 | 4265 | 100 | Minus |
| CG1028-PL | 1137 | Antp-RL | 39..886 | 871..24 | 4240 | 100 | Minus |
| CG1028-PI | 1137 | Antp-RI | 39..886 | 871..24 | 4240 | 100 | Minus |
| CG1028-PJ | 1137 | Antp-RJ | 39..886 | 871..24 | 4240 | 100 | Minus |
| CG1028-PM | 1137 | Antp-RM | 39..886 | 871..24 | 4240 | 100 | Minus |
| CG1028-PD | 1125 | Antp-RD | 39..874 | 871..36 | 4180 | 100 | Minus |
| CG1028-PN | 1125 | Antp-RN | 39..874 | 871..36 | 4180 | 100 | Minus |
| CG1028-PF | 1098 | Antp-RF | 39..621 | 871..289 | 2915 | 100 | Minus |
| CG1028-PE | 1098 | Antp-RE | 39..621 | 871..289 | 2915 | 100 | Minus |
| CG1028-PK | 1086 | Antp-RK | 39..621 | 871..289 | 2915 | 100 | Minus |
| CG1028-PG | 1086 | Antp-RG | 39..621 | 871..289 | 2915 | 100 | Minus |
| CG1028-PF | 1098 | Antp-RF | 620..847 | 251..24 | 1140 | 100 | Minus |
| CG1028-PE | 1098 | Antp-RE | 620..847 | 251..24 | 1140 | 100 | Minus |
| CG1028-PK | 1086 | Antp-RK | 620..835 | 251..36 | 1080 | 100 | Minus |
| CG1028-PG | 1086 | Antp-RG | 620..835 | 251..36 | 1080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 4111 | CG1028-RH | 1769..2621 | 871..19 | 4265 | 100 | Minus |
| Antp-RJ | 3490 | CG1028-RJ | 1769..2616 | 871..24 | 4240 | 100 | Minus |
| Antp-RI | 3279 | CG1028-RI | 1558..2405 | 871..24 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909872 | 289..871 | 2915 | 100 | Plus |
| 3R | 32079331 | 3R | 6908508..6908740 | 19..251 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 6908871..6908915 | 248..292 | 225 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 583..444 | 337 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 582..446 | 316 | 72.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 582..447 | 275 | 71.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 582..423 | 266 | 65 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 582..443 | 259 | 65 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 706..444 | 251 | 60.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 549..444 | 242 | 69.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 560..422 | 238 | 64.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 543..444 | 203 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 585..420 | 196 | 60.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 582..444 | 191 | 61.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 545..447 | 191 | 67.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 538..444 | 186 | 67.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 545..444 | 174 | 70.6 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 517..444 | 163 | 68.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2826 | 792..444 | 162 | 55.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 562..423 | 161 | 59 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 584..421 | 154 | 58 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 686..422 | 145 | 55.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 513..444 | 134 | 65.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 549..444 | 123 | 60.9 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 569..444 | 120 | 60.3 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 569..409 | 115 | 56.2 | Minus |
BO01056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:06 Download gff for
BO01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-PH | 39..894 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:44 Download gff for
BO01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1028-PH | 39..894 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:11 Download gff for
BO01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1769..2621 | 19..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:56 Download gff for
BO01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1769..2621 | 19..871 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:56 Download gff for
BO01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908508..6908738 | 19..249 | 100 | <- | Plus |
| 3R | 6908873..6908911 | 250..288 | 100 | <- | Plus |
| 3R | 6909290..6909872 | 289..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:11 Download gff for
BO01056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734230..2734460 | 19..249 | 100 | <- | Plus |
| arm_3R | 2734595..2734633 | 250..288 | 100 | <- | Plus |
| arm_3R | 2735012..2735594 | 289..871 | 100 | | Plus |
BO01056.5prime Sequence
870 bp (813 high quality bases) assembled on 2005-11-30
> BO01056.5prime
GAAGTTATCAGTCGACATGACGATGAGTACAAACAACTGCGAGAGCATGA
CCTCGTACTTCACCAACTCGTACATGGGGGCGGACATGCATCATGGGCAC
TACCCGGGCAACGGGGTCACCGACCTGGACGCCCAGCAGATGCACCACTA
CAGCCAGAACGCGAATCACCAGGGCAACATGCCCTACCCGCGCTTTCCAC
CCTACGACCGCATGCCCTACTACAACGGCCAGGGGATGGACCAGCAGCAG
CAGCACCAGGTCTACTCCCGCCCGGACAGCCCCTCCAGCCAGGTGGGCGG
GGTCATGCCCCAGGCGCAGACCAACGGTCAGTTGGGTGTTCCCCAGCAGC
AACAGCAGCAGCAGCAACAGCCCTCGCAGAACCAGCAGCAACAGCAGGCG
CAGCAGGCCCCACAGCAACTGCAGCAGCAGCTGCCGCAGGTGACGCAACA
GGTGACACATCCGCAGCAGCAACAACAGCAGCCCGTCGTCTACGCCAGCT
GCAAGTTGCAAGCGGCCGTTGGTGGACTGGGTATGGTTCCCGAGGGCGGA
TCGCCTCCGCTGGTGGATCAAATGTCCGGTCACCACATGAACGCCCAGAT
GACGCTGCCCCATCACATGGGACATCCGCAGGCGCAGTTGGGCTATACGG
ACGTTGGAGTTCCCGACGTGACAGAGGTCCATCAGAACCATCACAACATG
GGCATGTACCAGCAGCAGTCGGGAGTTCCGCCGGTGGGTGCCCCACCTCA
NGGCATGATGCACCAGGGCCAGGGTCCTCCACAGATGCACCAGGGACATC
CTGGCCAACACACGCCTCCTTCCCAAAAACCCGACTCGCAGTCCTCGGGG
ATGCCGTCTCCACTGTATCC
BO01056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1028-PL | 1137 | Antp-RL | 1..854 | 17..870 | 4176 | 99.5 | Plus |
| CG1028-PI | 1137 | Antp-RI | 1..854 | 17..870 | 4176 | 99.5 | Plus |
| CG1028-PJ | 1137 | Antp-RJ | 1..854 | 17..870 | 4176 | 99.5 | Plus |
| CG1028-PH | 894 | Antp-RH | 1..854 | 17..870 | 4176 | 99.5 | Plus |
| CG1028-PM | 1137 | Antp-RM | 1..854 | 17..870 | 4176 | 99.5 | Plus |
| CG1028-PD | 1125 | Antp-RD | 1..854 | 17..870 | 4176 | 99.5 | Plus |
| CG1028-PN | 1125 | Antp-RN | 1..854 | 17..870 | 4176 | 99.5 | Plus |
| CG1028-PF | 1098 | Antp-RF | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PK | 1086 | Antp-RK | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PG | 1086 | Antp-RG | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PE | 1098 | Antp-RE | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG1028-PF | 1098 | Antp-RF | 620..815 | 675..870 | 886 | 97.9 | Plus |
| CG1028-PK | 1086 | Antp-RK | 620..815 | 675..870 | 886 | 97.9 | Plus |
| CG1028-PG | 1086 | Antp-RG | 620..815 | 675..870 | 886 | 97.9 | Plus |
| CG1028-PE | 1098 | Antp-RE | 620..815 | 675..870 | 886 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RJ | 3490 | CG1028-RJ | 1731..2584 | 17..870 | 4214 | 99.6 | Plus |
| Antp-RI | 3279 | CG1028-RI | 1520..2373 | 17..870 | 4214 | 99.6 | Plus |
| Antp-RL | 4902 | CG1028-RL | 1731..2584 | 17..870 | 4214 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909910 | 637..17 | 3105 | 100 | Minus |
| 3R | 32079331 | 3R | 6908545..6908740 | 870..675 | 924 | 98 | Minus |
| 3R | 32079331 | 3R | 6908871..6908915 | 678..634 | 225 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 00:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 343..482 | 337 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 344..480 | 316 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 344..479 | 275 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 344..503 | 266 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 344..483 | 259 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 220..482 | 251 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 377..482 | 242 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 366..504 | 238 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 383..482 | 203 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 341..506 | 196 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 344..482 | 191 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 381..479 | 191 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 388..482 | 186 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 381..482 | 174 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 26..482 | 168 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 409..482 | 163 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 364..503 | 161 | 59 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 342..505 | 154 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 240..504 | 145 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 413..482 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 377..482 | 123 | 60.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 357..482 | 120 | 60.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 357..517 | 115 | 56.2 | Plus |
BO01056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:07 Download gff for
BO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-PN | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:46 Download gff for
BO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1028-PH | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:15 Download gff for
BO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RL | 1731..2584 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:33 Download gff for
BO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RL | 1731..2584 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:33 Download gff for
BO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908545..6908738 | 677..870 | 98 | <- | Minus |
| 3R | 6908873..6908911 | 638..676 | 100 | <- | Minus |
| 3R | 6909290..6909910 | 17..637 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:15 Download gff for
BO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734267..2734460 | 677..870 | 98 | <- | Minus |
| arm_3R | 2734595..2734633 | 638..676 | 100 | <- | Minus |
| arm_3R | 2735012..2735632 | 17..637 | 100 | | Minus |
BO01056.complete Sequence
925 bp (925 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629406
> BO01056.complete
GAAGTTATCAGTCGACATGACGATGAGTACAAACAACTGCGAGAGCATGA
CCTCGTACTTCACCAACTCGTACATGGGGGCGGACATGCATCATGGGCAC
TACCCGGGCAACGGGGTCACCGACCTGGACGCCCAGCAGATGCACCACTA
CAGCCAGAACGCGAATCACCAGGGCAACATGCCCTACCCGCGCTTTCCAC
CCTACGACCGCATGCCCTACTACAACGGCCAGGGGATGGACCAGCAGCAG
CAGCACCAGGTCTACTCCCGCCCGGACAGCCCCTCCAGCCAGGTGGGCGG
GGTCATGCCCCAGGCGCAGACCAACGGTCAGTTGGGTGTTCCCCAGCAGC
AACAGCAGCAGCAGCAACAGCCCTCGCAGAACCAGCAGCAACAGCAGGCG
CAGCAGGCCCCACAGCAACTGCAGCAGCAGCTGCCGCAGGTGACGCAACA
GGTGACACATCCGCAGCAGCAACAACAGCAGCCCGTCGTCTACGCCAGCT
GCAAGTTGCAAGCGGCCGTTGGTGGACTGGGTATGGTTCCCGAGGGCGGA
TCGCCTCCGCTGGTGGATCAAATGTCCGGTCACCACATGAACGCCCAGAT
GACGCTGCCCCATCACATGGGACATCCGCAGGCGCAGTTGGGCTATACGG
ACGTTGGAGTTCCCGACGTGACAGAGGTCCATCAGAACCATCACAACATG
GGCATGTACCAGCAGCAGTCGGGAGTTCCGCCGGTGGGTGCCCCACCTCA
GGGCATGATGCACCAGGGCCAGGGTCCTCCACAGATGCACCAGGGACATC
CTGGCCAACACACGCCTCCTTCCCAAAACCCGAACTCGCAGTCCTCGGGG
ATGCCGTCTCCACTGTATCCCTGGATGCGAAGTCAGTTTGGTAAGTGTCA
AGGAAAGGCAAGCTTTCTAGACCAT
BO01056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 894 | CG1028-PH | 1..891 | 17..907 | 4455 | 100 | Plus |
| Antp-RJ | 1137 | CG1028-PJ | 1..886 | 17..902 | 4430 | 100 | Plus |
| Antp-RI | 1137 | CG1028-PI | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-RH | 4111 | CG1028-RH | 1731..2621 | 17..907 | 4455 | 100 | Plus |
| Antp-RJ | 3490 | CG1028-RJ | 1731..2616 | 17..902 | 4430 | 100 | Plus |
| Antp-RI | 3279 | CG1028-RI | 1520..2405 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6909290..6909910 | 637..17 | 3105 | 100 | Minus |
| 3R | 32079331 | 3R | 6908508..6908740 | 907..675 | 1165 | 100 | Minus |
| 3R | 32079331 | 3R | 6908871..6908915 | 678..634 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 16:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 343..482 | 337 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 344..480 | 316 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 344..479 | 275 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 344..503 | 266 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 344..483 | 259 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 220..482 | 251 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 377..482 | 242 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 366..504 | 238 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 383..482 | 203 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 341..506 | 196 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 344..482 | 191 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 381..479 | 191 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 388..482 | 186 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 381..482 | 174 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 26..482 | 168 | 54.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 409..482 | 163 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 364..503 | 161 | 59 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 342..505 | 154 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 240..504 | 145 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 413..482 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 377..482 | 123 | 60.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 357..482 | 120 | 60.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 357..517 | 115 | 56.2 | Plus |
BO01056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:39 Download gff for
BO01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:42 Download gff for
BO01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2621 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:47 Download gff for
BO01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2621 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:39 Download gff for
BO01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2621 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:02 Download gff for
BO01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Antp-RH | 1731..2621 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:02 Download gff for
BO01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6908505..6908738 | 677..909 | 99 | <- | Minus |
| 3R | 6908873..6908911 | 638..676 | 100 | <- | Minus |
| 3R | 6909290..6909910 | 17..637 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:47 Download gff for
BO01056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2734227..2734460 | 677..909 | 99 | <- | Minus |
| arm_3R | 2734595..2734633 | 638..676 | 100 | <- | Minus |
| arm_3R | 2735012..2735632 | 17..637 | 100 | | Minus |
BO01056.pep Sequence
Translation from 16 to 925
> BO01056.pep
MTMSTNNCESMTSYFTNSYMGADMHHGHYPGNGVTDLDAQQMHHYSQNAN
HQGNMPYPRFPPYDRMPYYNGQGMDQQQQHQVYSRPDSPSSQVGGVMPQA
QTNGQLGVPQQQQQQQQQPSQNQQQQQAQQAPQQLQQQLPQVTQQVTHPQ
QQQQQPVVYASCKLQAAVGGLGMVPEGGSPPLVDQMSGHHMNAQMTLPHH
MGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGVPPVGAPPQGMMHQ
GQGPPQMHQGHPGQHTPPSQNPNSQSSGMPSPLYPWMRSQFGKCQGKASF
LDH
BO01056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Antp-PH | 297 | CG1028-PH | 1..297 | 1..297 | 1655 | 100 | Plus |
| Antp-PJ | 378 | CG1028-PJ | 1..295 | 1..295 | 1644 | 100 | Plus |
| Antp-PI | 378 | CG1028-PI | 1..295 | 1..295 | 1644 | 100 | Plus |
| Antp-PL | 378 | CG1028-PL | 1..295 | 1..295 | 1644 | 100 | Plus |
| Antp-PM | 378 | CG1028-PM | 1..295 | 1..295 | 1644 | 100 | Plus |
