Clone Sequence Records
BO01060.3prime Sequence
892 bp (813 high quality bases) assembled on 2005-11-30
> BO01060.3prime
ATGGTCTAGAAAGCTTGCGCAGAACTTCCATCGGTTGCCGCACTCGTTGC
ACATGACGAAGGTGGTCATAGGTTCATCGGCGGAACGAGTCTGCAGCTGG
TTGTAGGTGCAGTTGCGCTTCTTGCACTTGGCGCACTTGAGGAGATCGGT
CTTGGTGCCCTGCACGGTGGCCAGCTGGGCATCGTTGATGGCCTCCTTGA
CGAACTTCTCGCGCAGCTTCTTCATCTCATCGCTGGCCATCTCCTCCGGC
GTCATTTTGGCCAGCTGCTTGGCAGTGACGGCGCCGCACATAAAGTTGCC
TCGCAATCCAGGATTTTTGGGGTCCTTCAGATTGGCCACGCGTGACCTAA
TGCGATTCTTGTACTTCATATCCGTGTTATTGAACTCGGAGTAAATGGCA
TCCTCCAGTTCGGCGGCCATTTCCTCCGGCTCACCGCATCCTTCGGGCAC
TTCACCAATCTTCAGTGCGGTGGCCAGCATTTCGCGGCATTTGATGCGGA
CCGCATCTGTCATGCCGCCGGAGGGAAACGAGGTCTGTGACGAGGATGTC
GAGCCTTTCTTCTCTTTATCCTTGGATGAGCTGGATGAACTGGACTTATC
CTTGCCGGAGATTGACGACGACGACTTGGCGGCACTGGTGGACTTCGAGG
CACTGCTGTTGTTGGAGGAGCCCTCCTTAGCGGAGCTGTTGTTCGGTGTG
GTTGGCGCCGGGCTGGCGAGGAATCGTTTCCAGTTCTTGATCAGCGTCTT
GGCCAGAGCGATCACCTCGTCGTCCTTGCTACTCTTGCGCAGCTCGTTTA
CGGTCATGCCGATGCGCGTTTTGGTCAGAATGTCGAGATTGATGTTAAGC
GTTTGCAGGGCCTTCAGCAGGTCCAGAGGCTGATCCTGTCCT
BO01060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3710-PA | 942 | TfIIS-RA | 66..939 | 892..19 | 4345 | 99.8 | Minus |
CG8117-PA | 489 | CG8117-RA | 259..310 | 255..204 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIS-RB | 1773 | CG3710-RB | 325..1198 | 892..19 | 4355 | 99.9 | Minus |
TfIIS-RA | 1401 | CG3710-RA | 325..1198 | 892..19 | 4355 | 99.9 | Minus |
CG8117-RA | 770 | CG8117-RA | 323..552 | 260..25 | 275 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15059494..15060366 | 19..891 | 4350 | 99.9 | Plus |
X | 23542271 | X | 15644544..15644660 | 260..144 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:15:08 has no hits.
BO01060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:14 Download gff for
BO01060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-PA | 66..942 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:56 Download gff for
BO01060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3710-PA | 66..942 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:32:50 Download gff for
BO01060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 325..1203 | 12..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:17 Download gff for
BO01060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 325..1203 | 12..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:17 Download gff for
BO01060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15059489..15060366 | 12..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:32:50 Download gff for
BO01060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15059489..15060366 | 12..892 | 99 | | Plus |
BO01060.5prime Sequence
829 bp (711 high quality bases) assembled on 2005-11-30
> BO01060.5prime
GAAGTTATCAGTCGACATGAGCGTGGAGGAGGAAGTGTTTCGAATCCAAA
AGAAGATGAGCAAGATGGCCAGCGACGGCACAGGACAGGATCAGGCTCTG
GACCTGCTGAAGGCCCTGCAAACGCTTAACATCAATCTCGACATTCTGAC
CAAAACGCGCATCGGCATGACCGTAAACGAGCTGCGCAAGAGTAGCAAGG
ACGACGAGGTGATCGCTCTGGCCAAGACGCTGATCAAGAACTGGAAACGA
TTCCTCGCCAGCCCGGCGCCAACCACACCGAACAACAGCTCCGCTAAGGA
GGGCTCCTCCAACAACAGCAGTGCCTCGAAGTCCACCAGTGCCGCCAAGT
CGTCGTCGTCAATCTCCGGCAAGGATAAGTCCAGTTCATCCAGCTCATCC
AAGGATAAAGAGAAGAAAGGCTCGACATCCTCGTCACAGACCTCGTTTCC
CTCCGGCGGCATGACAGATGCGGTCCGCATCAAATGCCGCGAAATGCTGG
CCACCGCACTGAAGATTGGTGAAGTGCCCGAAGGATGCGGTGAGCCGGAG
GAAATGGCCGCCGAACTGGAGGATGCCATTTACTCCGAGTTCAATAACAC
GGATATGAAGTACAAGAATCGCATTAGGTCACGCGTGGCCAATCTGAAGG
ACCCCAAAAATCCTGGATTGCGAGGCAACTTTATGTGCGGCGCCGTCACT
GCCAAGCAGCTGGCCAAAATGACGCCGGAGGAGATGGCCAGCGATGAGAT
GAAGAAGCTGCGCGAGAAGTTCGTCAAGGAGGCCCATCACGATGCCCAGC
TGGCCACCGTGCAGGGGCACCAAGACCGA
BO01060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3710-PA | 942 | TfIIS-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG3710-PA | 942 | TfIIS-RA | 773..800 | 789..816 | 140 | 100 | Plus |
CG8117-PA | 489 | CG8117-RA | 259..310 | 719..770 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIS-RB | 1773 | CG3710-RB | 260..1071 | 17..829 | 3995 | 99.6 | Plus |
TfIIS-RA | 1401 | CG3710-RA | 260..1071 | 17..829 | 3995 | 99.6 | Plus |
CG8117-RA | 770 | CG8117-RA | 323..383 | 714..774 | 200 | 88.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15059621..15060366 | 829..83 | 3625 | 99.3 | Minus |
2L | 23513712 | 2L | 15060432..15060498 | 83..17 | 335 | 100 | Minus |
X | 23542271 | X | 15644544..15644604 | 714..774 | 200 | 88.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:54:49 has no hits.
BO01060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:15 Download gff for
BO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-PA | 1..811 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:15:57 Download gff for
BO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3710-PA | 1..811 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:12 Download gff for
BO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 260..1070 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:04 Download gff for
BO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 260..1070 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:04 Download gff for
BO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15059622..15060366 | 83..828 | 99 | <- | Minus |
2L | 15060433..15060498 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:12 Download gff for
BO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15059622..15060366 | 83..828 | 99 | <- | Minus |
arm_2L | 15060433..15060498 | 17..82 | 100 | | Minus |
BO01060.complete Sequence
973 bp (973 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629408
> BO01060.complete
GAAGTTATCAGTCGACATGAGCGTGGAGGAGGAAGTGTTTCGAATCCAAA
AGAAGATGAGCAAGATGGCCAGCGACGGCACAGGACAGGATCAGGCTCTG
GACCTGCTGAAGGCCCTGCAAACGCTTAACATCAATCTCGACATTCTGAC
CAAAACGCGCATCGGCATGACCGTAAACGAGCTGCGCAAGAGTAGCAAGG
ACGACGAGGTGATCGCTCTGGCCAAGACGCTGATCAAGAACTGGAAACGA
TTCCTCGCCAGCCCGGCGCCAACCACACCGAACAACAGCTCCGCTAAGGA
GGGCTCCTCCAACAACAGCAGTGCCTCGAAGTCCACCAGTGCCGCCAAGT
CGTCGTCGTCAATCTCCGGCAAGGATAAGTCCAGTTCATCCAGCTCATCC
AAGGATAAAGAGAAGAAAGGCTCGACATCCTCGTCACAGACCTCGTTTCC
CTCCGGCGGCATGACAGATGCGGTCCGCATCAAATGCCGCGAAATGCTGG
CCACCGCACTGAAGATTGGTGAAGTGCCCGAAGGATGCGGTGAGCCGGAG
GAAATGGCCGCCGAACTGGAGGATGCCATTTACTCCGAGTTCAATAACAC
GGATATGAAGTACAAGAATCGCATTAGGTCACGCGTGGCCAATCTGAAGG
ACCCCAAAAATCCTGGATTGCGAGGCAACTTTATGTGCGGCGCCGTCACT
GCCAAGCAGCTGGCCAAAATGACGCCGGAGGAGATGGCCAGCGATGAGAT
GAAGAAGCTGCGCGAGAAGTTCGTCAAGGAGGCCATCAACGATGCCCAGC
TGGCCACCGTGCAGGGCACCAAGACCGATCTCCTCAAGTGCGCCAAGTGC
AAGAAGCGCAACTGCACCTACAACCAGCTGCAGACTCGTTCCGCCGATGA
ACCTATGACCACCTTCGTCATGTGCAACGAGTGCGGCAACCGATGGAAGT
TCTGCGCAAGCTTTCTAGACCAT
BO01060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIS-RB | 942 | CG3710-PB | 1..939 | 17..955 | 4695 | 100 | Plus |
TfIIS-RA | 942 | CG3710-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
CG8117-RA | 489 | CG8117-PA | 254..370 | 714..830 | 270 | 82.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIS-RB | 1773 | CG3710-RB | 260..1198 | 17..955 | 4695 | 100 | Plus |
TfIIS-RA | 1401 | CG3710-RA | 260..1198 | 17..955 | 4695 | 100 | Plus |
CG8117-RA | 770 | CG8117-RA | 323..439 | 714..830 | 270 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15059494..15060366 | 955..83 | 4365 | 100 | Minus |
2L | 23513712 | 2L | 15060432..15060498 | 83..17 | 335 | 100 | Minus |
X | 23542271 | X | 15644544..15644660 | 714..830 | 270 | 82.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:44:12 has no hits.
BO01060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:08 Download gff for
BO01060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 1..942 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:02 Download gff for
BO01060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 256..1199 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:30 Download gff for
BO01060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 260..1198 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:08 Download gff for
BO01060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 256..1199 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:46 Download gff for
BO01060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIS-RA | 260..1198 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:46 Download gff for
BO01060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15059492..15060366 | 83..957 | 99 | <- | Minus |
2L | 15060433..15060498 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:30 Download gff for
BO01060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15059492..15060366 | 83..957 | 99 | <- | Minus |
arm_2L | 15060433..15060498 | 17..82 | 100 | | Minus |
BO01060.pep Sequence
Translation from 16 to 973
> BO01060.pep
MSVEEEVFRIQKKMSKMASDGTGQDQALDLLKALQTLNINLDILTKTRIG
MTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTPNNSSAKEGSSNN
SSASKSTSAAKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSFPSGGMT
DAVRIKCREMLATALKIGEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYK
NRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLRE
KFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTF
VMCNECGNRWKFCASFLDH
BO01060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIS-PB | 313 | CG3710-PB | 1..313 | 1..313 | 1589 | 100 | Plus |
TfIIS-PA | 313 | CG3710-PA | 1..313 | 1..313 | 1589 | 100 | Plus |
CG8117-PA | 162 | CG8117-PA | 1..161 | 149..311 | 576 | 63.8 | Plus |
pps-PA | 2016 | CG6525-PA | 1219..1409 | 95..277 | 157 | 29.5 | Plus |
pps-PB | 2018 | CG6525-PB | 1221..1411 | 95..277 | 157 | 29.5 | Plus |