Clone Sequence Records
BO01064.3prime Sequence
827 bp (818 high quality bases) assembled on 2005-11-30
> BO01064.3prime
ATGGTCTAGAAAGCTTGCGCTGGATGGAAACTTGCCAAAGAACTGCATGC
GCTGAAACAACTCGGCGTTCAATTGTTGTGGATAGCCCTGCATCTGGGCG
GGATGGGGCGCCTGATGATGGTGGGCCTGAGGAGCCTGCTGGTACTGCAT
CTGCTGATAGGCAGCCTGATAGGCAGCGGGATTCATGCGCTGGTACAGGG
CGGCGGCGGCAGCGGCGGCGAATGGAACAGCCGGGTATCCGTAGCTGGAA
GCTGGAGCTCCGTATGGTGAAGCAGCCATCATCGGCGAGAATATGGCCTG
ACGATAGGCGGCCAGGCGAGTGCGACTGGCGCCGGGATTCTTGCGCCTCA
GCTTGCCGGTGGTCTCGCCAATGAATACCTCCTCGGCCGAGGGGTCCAGG
ATCCAGTAGTTGCCCTTGCCGGGATCATCGTAGCTGCGGGGAATCTTCGT
GAAGCACTTGTTCAGGCTCAGATTGTGGCGAATGGAGTTCTGCCAGCCCC
GCTTGTTGGCCTTGAAGTAGGGGAATCTATTGATCAGATACTGATAGATG
CCATTCAAAGTCAACCGCTGCTCGGGACTATCCTGGATGGCCATCATGAT
GAGGGCGTTGTAGCTGTATGGCGGTTTCTTGGTATCGCTGCCGGCGGTCA
TTTTCTGTTTCTTGCTGGGATTGCCATCCTCGCTCTCCTGGTCCTCGTCC
AGCTGATCCTCCAGCTCATCGTCGAACTCCACGTCGAGCTTGTCATTGTT
TTGCGACGATAGACTCTCGGCGGCACTGCTCATGGGTGTGCTGGTCCTGC
TGGGGCTGTCGAAATCCTCCGAAAGCG
BO01064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16738-PA | 969 | slp1-RA | 162..966 | 823..19 | 4025 | 100 | Minus |
CG1132-PA | 1098 | fd64A-RA | 391..429 | 507..469 | 170 | 97.4 | Minus |
CG5069-PA | 1527 | croc-RA | 327..384 | 508..451 | 165 | 91.3 | Minus |
CG2939-PA | 1356 | slp2-RA | 736..799 | 429..366 | 145 | 89 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slp1-RA | 1425 | CG16738-RA | 271..1075 | 823..19 | 4025 | 100 | Minus |
slp2-RA | 2346 | CG2939-RA | 905..1217 | 618..306 | 385 | 76.8 | Minus |
croc-RA | 2347 | CG5069-RA | 563..725 | 557..395 | 245 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3825945..3826749 | 823..19 | 4025 | 100 | Minus |
2L | 23513712 | 2L | 3837744..3838016 | 618..346 | 375 | 75.8 | Minus |
3L | 28110227 | 3L | 21475755..21475917 | 395..557 | 245 | 76.7 | Plus |
3L | 28110227 | 3L | 4020394..4020483 | 529..440 | 240 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:09:17 has no hits.
BO01064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:18 Download gff for
BO01064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-PA | 158..969 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:02 Download gff for
BO01064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16738-PA | 158..969 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:22 Download gff for
BO01064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 267..1083 | 11..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:26 Download gff for
BO01064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 267..1083 | 11..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:26 Download gff for
BO01064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3825941..3826757 | 11..827 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:22 Download gff for
BO01064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3825941..3826757 | 11..827 | 99 | | Minus |
BO01064.5prime Sequence
874 bp (762 high quality bases) assembled on 2005-11-29
> BO01064.5prime
GAAGTTATCAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACT
TCTCCATCGATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAA
CCCATCAAAACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTA
CTCCAATTCCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCA
GCAGGACCAGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAA
AACAATGACAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCT
GGACGAGGACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAA
TGACCGCCGGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTC
ATCATGATGGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGG
CATCTATCAGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGC
GGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTC
ACGAAGATTCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGAT
CCTGGACCCCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGC
TGAGGCGCAAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGT
CAGGCCATATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGC
TTCCAGCTACGGATACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCCGCG
CCCTGTACCAGCGCATGAATCCCGCTGCCTATCAGGCTGCCTATCAGCAG
ATGCAGTACCAGCAGGCTCCCTCA
BO01064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16738-PA | 969 | slp1-RA | 1..854 | 17..870 | 4220 | 99.7 | Plus |
CG1132-PA | 1098 | fd64A-RA | 391..429 | 494..532 | 170 | 97.4 | Plus |
CG5069-PA | 1527 | croc-RA | 327..384 | 493..550 | 165 | 91.3 | Plus |
CG2939-PA | 1356 | slp2-RA | 736..799 | 572..635 | 145 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slp1-RA | 1425 | CG16738-RA | 110..963 | 17..870 | 4240 | 99.8 | Plus |
slp2-RA | 2346 | CG2939-RA | 905..1217 | 383..695 | 385 | 76.8 | Plus |
croc-RA | 2347 | CG5069-RA | 563..725 | 444..606 | 245 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3825784..3826637 | 17..870 | 4240 | 99.8 | Plus |
2L | 23513712 | 2L | 3837744..3838016 | 383..655 | 375 | 75.8 | Plus |
3L | 28110227 | 3L | 21475755..21475917 | 606..444 | 245 | 76.7 | Minus |
3L | 28110227 | 3L | 4020394..4020483 | 472..561 | 240 | 84.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:17:01 has no hits.
BO01064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:18 Download gff for
BO01064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-PA | 1..856 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:03 Download gff for
BO01064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16738-PA | 1..856 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:21 Download gff for
BO01064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 101..965 | 7..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:42 Download gff for
BO01064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 101..965 | 7..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:42 Download gff for
BO01064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3825775..3826639 | 7..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:21 Download gff for
BO01064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3825775..3826639 | 7..873 | 99 | | Plus |
BO01064.complete Sequence
1000 bp (1000 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629409
> BO01064.complete
GAAGTTATCAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACT
TCTCCATCGATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAA
CCCATCAAAACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTA
CTCCAATTCCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCA
GCAGGACCAGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAA
AACAATGACAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCT
GGACGAGGACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAA
TGACCGCCGGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTC
ATCATGATGGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGG
CATCTATCAGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGC
GGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTC
ACGAAGATTCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGAT
CCTGGACCCCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGC
TGAGGCGCAAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGT
CAGGCCATATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGC
TTCCAGCTACGGATACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCGCCG
CCCTGTACCAGCGCATGAATCCCGCTGCCTATCAGGCTGCCTATCAGCAG
ATGCAGTACCAGCAGGCTCCTCAGGCCCACCATCATCAGGCGCCCCATCC
CGCCCAGATGCAGGGCTATCCACAACAATTGAACGCCGAGTTGTTTCAGC
GCATGCAGTTCTTTGGCAAGTTTCCATCCAGCGCAAGCTTTCTAGACCAT
BO01064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slp1-RA | 969 | CG16738-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
slp2-RA | 1356 | CG2939-PA | 547..819 | 383..655 | 375 | 75.8 | Plus |
croc-RA | 1527 | CG5069-PA | 278..440 | 444..606 | 245 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slp1-RA | 1425 | CG16738-RA | 110..1075 | 17..982 | 4830 | 100 | Plus |
slp2-RA | 2346 | CG2939-RA | 905..1177 | 383..655 | 375 | 75.8 | Plus |
croc-RA | 2347 | CG5069-RA | 563..725 | 444..606 | 245 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3825784..3826749 | 17..982 | 4830 | 100 | Plus |
2L | 23513712 | 2L | 3837744..3838016 | 383..655 | 375 | 75.8 | Plus |
3L | 28110227 | 3L | 21475755..21475917 | 606..444 | 245 | 76.7 | Minus |
3L | 28110227 | 3L | 4020394..4020483 | 472..561 | 240 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:51:41 has no hits.
BO01064.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:23 Download gff for
BO01064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 1..969 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:23 Download gff for
BO01064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 96..1078 | 7..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:38 Download gff for
BO01064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 110..1075 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:23 Download gff for
BO01064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 96..1078 | 7..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:08 Download gff for
BO01064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slp1-RA | 110..1075 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:08 Download gff for
BO01064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3825784..3826749 | 17..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:38 Download gff for
BO01064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3825784..3826749 | 17..984 | 99 | | Plus |
BO01064.pep Sequence
Translation from 16 to 1000
> BO01064.pep
MVKSEMEFKSNFSIDAILAKKPINTATQPIKTEPVHHHHQYVHPYSNSDG
ELSASEDFDSPSRTSTPMSSAAESLSSQNNDKLDVEFDDELEDQLDEDQE
SEDGNPSKKQKMTAGSDTKKPPYSYNALIMMAIQDSPEQRLTLNGIYQYL
INRFPYFKANKRGWQNSIRHNLSLNKCFTKIPRSYDDPGKGNYWILDPSA
EEVFIGETTGKLRRKNPGASRTRLAAYRQAIFSPMMAASPYGAPASSYGY
PAVPFAAAAAAALYQRMNPAAYQAAYQQMQYQQAPQAHHHQAPHPAQMQG
YPQQLNAELFQRMQFFGKFPSSASFLDH
BO01064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slp1-PA | 322 | CG16738-PA | 1..322 | 1..322 | 1702 | 100 | Plus |
slp2-PA | 451 | CG2939-PA | 59..330 | 9..271 | 563 | 45 | Plus |
fd19B-PA | 260 | CG9571-PA | 40..231 | 101..297 | 378 | 42.1 | Plus |
croc-PA | 508 | CG5069-PA | 70..165 | 120..215 | 320 | 58.3 | Plus |
fd64A-PB | 365 | CG1132-PB | 90..195 | 119..221 | 309 | 54.1 | Plus |