Clone BO01064 Report

Search the DGRC for BO01064

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptslp1-RA
Protein status:BO01064.pep: full length peptide match
Sequenced Size:1000

Clone Sequence Records

BO01064.3prime Sequence

827 bp (818 high quality bases) assembled on 2005-11-30

> BO01064.3prime
ATGGTCTAGAAAGCTTGCGCTGGATGGAAACTTGCCAAAGAACTGCATGC
GCTGAAACAACTCGGCGTTCAATTGTTGTGGATAGCCCTGCATCTGGGCG
GGATGGGGCGCCTGATGATGGTGGGCCTGAGGAGCCTGCTGGTACTGCAT
CTGCTGATAGGCAGCCTGATAGGCAGCGGGATTCATGCGCTGGTACAGGG
CGGCGGCGGCAGCGGCGGCGAATGGAACAGCCGGGTATCCGTAGCTGGAA
GCTGGAGCTCCGTATGGTGAAGCAGCCATCATCGGCGAGAATATGGCCTG
ACGATAGGCGGCCAGGCGAGTGCGACTGGCGCCGGGATTCTTGCGCCTCA
GCTTGCCGGTGGTCTCGCCAATGAATACCTCCTCGGCCGAGGGGTCCAGG
ATCCAGTAGTTGCCCTTGCCGGGATCATCGTAGCTGCGGGGAATCTTCGT
GAAGCACTTGTTCAGGCTCAGATTGTGGCGAATGGAGTTCTGCCAGCCCC
GCTTGTTGGCCTTGAAGTAGGGGAATCTATTGATCAGATACTGATAGATG
CCATTCAAAGTCAACCGCTGCTCGGGACTATCCTGGATGGCCATCATGAT
GAGGGCGTTGTAGCTGTATGGCGGTTTCTTGGTATCGCTGCCGGCGGTCA
TTTTCTGTTTCTTGCTGGGATTGCCATCCTCGCTCTCCTGGTCCTCGTCC
AGCTGATCCTCCAGCTCATCGTCGAACTCCACGTCGAGCTTGTCATTGTT
TTGCGACGATAGACTCTCGGCGGCACTGCTCATGGGTGTGCTGGTCCTGC
TGGGGCTGTCGAAATCCTCCGAAAGCG

BO01064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16738-PA 969 slp1-RA 162..966 823..19 4025 100 Minus
CG1132-PA 1098 fd64A-RA 391..429 507..469 170 97.4 Minus
CG5069-PA 1527 croc-RA 327..384 508..451 165 91.3 Minus
CG2939-PA 1356 slp2-RA 736..799 429..366 145 89 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 1425 CG16738-RA 271..1075 823..19 4025 100 Minus
slp2-RA 2346 CG2939-RA 905..1217 618..306 385 76.8 Minus
croc-RA 2347 CG5069-RA 563..725 557..395 245 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3825945..3826749 823..19 4025 100 Minus
2L 23513712 2L 3837744..3838016 618..346 375 75.8 Minus
3L 28110227 3L 21475755..21475917 395..557 245 76.7 Plus
3L 28110227 3L 4020394..4020483 529..440 240 84.4 Minus
Blast to na_te.dros performed on 2015-02-13 16:09:17 has no hits.

BO01064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:18 Download gff for BO01064.3prime
Subject Subject Range Query Range Percent Splice Strand
slp1-PA 158..969 15..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:02 Download gff for BO01064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16738-PA 158..969 15..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:22 Download gff for BO01064.3prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 267..1083 11..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:35:26 Download gff for BO01064.3prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 267..1083 11..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:35:26 Download gff for BO01064.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3825941..3826757 11..827 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:22 Download gff for BO01064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3825941..3826757 11..827 99   Minus

BO01064.5prime Sequence

874 bp (762 high quality bases) assembled on 2005-11-29

> BO01064.5prime
GAAGTTATCAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACT
TCTCCATCGATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAA
CCCATCAAAACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTA
CTCCAATTCCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCA
GCAGGACCAGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAA
AACAATGACAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCT
GGACGAGGACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAA
TGACCGCCGGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTC
ATCATGATGGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGG
CATCTATCAGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGC
GGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTC
ACGAAGATTCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGAT
CCTGGACCCCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGC
TGAGGCGCAAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGT
CAGGCCATATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGC
TTCCAGCTACGGATACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCCGCG
CCCTGTACCAGCGCATGAATCCCGCTGCCTATCAGGCTGCCTATCAGCAG
ATGCAGTACCAGCAGGCTCCCTCA

BO01064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16738-PA 969 slp1-RA 1..854 17..870 4220 99.7 Plus
CG1132-PA 1098 fd64A-RA 391..429 494..532 170 97.4 Plus
CG5069-PA 1527 croc-RA 327..384 493..550 165 91.3 Plus
CG2939-PA 1356 slp2-RA 736..799 572..635 145 89 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 1425 CG16738-RA 110..963 17..870 4240 99.8 Plus
slp2-RA 2346 CG2939-RA 905..1217 383..695 385 76.8 Plus
croc-RA 2347 CG5069-RA 563..725 444..606 245 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3825784..3826637 17..870 4240 99.8 Plus
2L 23513712 2L 3837744..3838016 383..655 375 75.8 Plus
3L 28110227 3L 21475755..21475917 606..444 245 76.7 Minus
3L 28110227 3L 4020394..4020483 472..561 240 84.4 Plus
Blast to na_te.dros performed on 2015-02-11 04:17:01 has no hits.

BO01064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:18 Download gff for BO01064.5prime
Subject Subject Range Query Range Percent Splice Strand
slp1-PA 1..856 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:03 Download gff for BO01064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16738-PA 1..856 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:21 Download gff for BO01064.5prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 101..965 7..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:42 Download gff for BO01064.5prime
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 101..965 7..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:42 Download gff for BO01064.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3825775..3826639 7..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:21 Download gff for BO01064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3825775..3826639 7..873 99   Plus

BO01064.complete Sequence

1000 bp (1000 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629409

> BO01064.complete
GAAGTTATCAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACT
TCTCCATCGATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAA
CCCATCAAAACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTA
CTCCAATTCCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCA
GCAGGACCAGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAA
AACAATGACAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCT
GGACGAGGACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAA
TGACCGCCGGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTC
ATCATGATGGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGG
CATCTATCAGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGC
GGGGCTGGCAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTC
ACGAAGATTCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGAT
CCTGGACCCCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGC
TGAGGCGCAAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGT
CAGGCCATATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGC
TTCCAGCTACGGATACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCGCCG
CCCTGTACCAGCGCATGAATCCCGCTGCCTATCAGGCTGCCTATCAGCAG
ATGCAGTACCAGCAGGCTCCTCAGGCCCACCATCATCAGGCGCCCCATCC
CGCCCAGATGCAGGGCTATCCACAACAATTGAACGCCGAGTTGTTTCAGC
GCATGCAGTTCTTTGGCAAGTTTCCATCCAGCGCAAGCTTTCTAGACCAT

BO01064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 969 CG16738-PA 1..966 17..982 4830 100 Plus
slp2-RA 1356 CG2939-PA 547..819 383..655 375 75.8 Plus
croc-RA 1527 CG5069-PA 278..440 444..606 245 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-RA 1425 CG16738-RA 110..1075 17..982 4830 100 Plus
slp2-RA 2346 CG2939-RA 905..1177 383..655 375 75.8 Plus
croc-RA 2347 CG5069-RA 563..725 444..606 245 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3825784..3826749 17..982 4830 100 Plus
2L 23513712 2L 3837744..3838016 383..655 375 75.8 Plus
3L 28110227 3L 21475755..21475917 606..444 245 76.7 Minus
3L 28110227 3L 4020394..4020483 472..561 240 84.4 Plus
Blast to na_te.dros performed on 2014-11-26 16:51:41 has no hits.

BO01064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:23 Download gff for BO01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 1..969 17..986 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:23 Download gff for BO01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 96..1078 7..990 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:38 Download gff for BO01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 110..1075 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:23 Download gff for BO01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 96..1078 7..990 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:08 Download gff for BO01064.complete
Subject Subject Range Query Range Percent Splice Strand
slp1-RA 110..1075 17..984 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:08 Download gff for BO01064.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3825784..3826749 17..984 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:38 Download gff for BO01064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3825784..3826749 17..984 99   Plus

BO01064.pep Sequence

Translation from 16 to 1000

> BO01064.pep
MVKSEMEFKSNFSIDAILAKKPINTATQPIKTEPVHHHHQYVHPYSNSDG
ELSASEDFDSPSRTSTPMSSAAESLSSQNNDKLDVEFDDELEDQLDEDQE
SEDGNPSKKQKMTAGSDTKKPPYSYNALIMMAIQDSPEQRLTLNGIYQYL
INRFPYFKANKRGWQNSIRHNLSLNKCFTKIPRSYDDPGKGNYWILDPSA
EEVFIGETTGKLRRKNPGASRTRLAAYRQAIFSPMMAASPYGAPASSYGY
PAVPFAAAAAAALYQRMNPAAYQAAYQQMQYQQAPQAHHHQAPHPAQMQG
YPQQLNAELFQRMQFFGKFPSSASFLDH

BO01064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
slp1-PA 322 CG16738-PA 1..322 1..322 1702 100 Plus
slp2-PA 451 CG2939-PA 59..330 9..271 563 45 Plus
fd19B-PA 260 CG9571-PA 40..231 101..297 378 42.1 Plus
croc-PA 508 CG5069-PA 70..165 120..215 320 58.3 Plus
fd64A-PB 365 CG1132-PB 90..195 119..221 309 54.1 Plus