Clone BO01065 Report

Search the DGRC for BO01065

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCycH-RA
Protein status:BO01065.pep:
Sequenced Size:1006

Clone Sequence Records

BO01065.3prime Sequence

918 bp (819 high quality bases) assembled on 2005-11-30

> BO01065.3prime
ATGGTCTAGAAAGCTTGCTTGGCTGATGTTCATAGCAGATGTGTCCGAGC
TCACATCTGCAATGTGGAATGAGGCATCTTCGGCGGGCATGTCATCCTCA
TCGGTGTACAATCGGCGTAGGCGCTCCTTATAGAGTTCGCTATCAGGATT
ATTGGCTTGATTTCGGCACTTGTCCAACTTTTTCTCGATGGCCTTGACCT
TCTCCCGATCGGGCTGCTGATATTGCTTCACCATTATGCGAATTTTTCGC
ACGGCATCTATGAGTCCGGGTAGCTTCTCCCTGGCGGAGACAAACAGAAG
ATCCGTCACATAGCTATCGAGATTCTCTTGCTCTCTGCTGGCCGCGTGGA
GGACGGCAGCCAATGCAATTTGCGAAGGCGTATGCAGAAGACAGGCATCC
GAGTAGTACGTGGAATCAATGAAACTATCAATATGTGGCCGCAGACGATC
TGGATTCTGCATATTGCTGCGAGTTTTTATATCTATCAGGAAACCCTCGA
TGGGTCTGAACGGATTGTGTATGGTGAGGTAGTAGTTGAGCTGTCCAATC
AGCAGTAATTCATTGGACAACACTATGTCGGTGGCCTTGTTCCTGTCGCC
CTTGATGTTGTTCACGAACTGGTTGATGGACACGTTGAACTCCTCAACTT
TGCAGGCAACGAACACGCATGTGGCTAGAATCTCCTTGGGGTGATAGTCC
ATGGGGGAGTTGTTCAGATAGAACCGCTTGAAGTAGTGGAAGGCCGTGCC
CACAACGCACTTGGGCATCGTCGGTTCGAAGCGGCGGCAGAAATCGAACA
GGTAGATCTCGTACTGCTTCAGCAACAGGCGCTCCTCCGCCGACGTGAGA
AAGTGCTCATTGAGGTCGCGACCCTGCGCCTCCTCCTCGTGCGACTCGAT
ATACTTGCTGTTCTGCTC

BO01065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7405-PA 975 CycH-RA 73..972 918..19 4450 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-RA 1065 CG7405-RA 82..981 918..19 4470 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21822078..21822319 918..677 1195 99.6 Minus
3L 28110227 3L 21822657..21822885 474..246 1145 100 Minus
3L 28110227 3L 21822396..21822597 676..475 995 99.5 Minus
3L 28110227 3L 21823111..21823225 133..19 575 100 Minus
3L 28110227 3L 21822941..21823052 245..134 560 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:58:42 has no hits.

BO01065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:19 Download gff for BO01065.3prime
Subject Subject Range Query Range Percent Splice Strand
CycH-PA 73..975 18..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:04 Download gff for BO01065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7405-PA 73..975 18..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:18 Download gff for BO01065.3prime
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 82..988 11..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:29 Download gff for BO01065.3prime
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 82..988 11..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:29 Download gff for BO01065.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21822941..21823052 134..245 100 -> Minus
3L 21823111..21823229 14..133 96 -> Minus
3L 21822078..21822319 677..918 99 -> Minus
3L 21822396..21822597 475..676 99 -> Minus
3L 21822657..21822885 246..474 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:18 Download gff for BO01065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21815178..21815419 677..918 99 -> Minus
arm_3L 21815496..21815697 475..676 99 -> Minus
arm_3L 21815757..21815985 246..474 100 -> Minus
arm_3L 21816041..21816152 134..245 100 -> Minus
arm_3L 21816211..21816329 14..133 96 -> Minus

BO01065.5prime Sequence

881 bp (772 high quality bases) assembled on 2005-11-29

> BO01065.5prime
GAAGTTATCAGTCGACATGTATCCTGTGAGCTCGCAAAAGAGGTCCTGGA
CATTCGCCAATGAGGGCCAGCTCATGGAGTTCCGCGTGGAGCAGAACAGC
AAGTATATCGAGTCGCACGAGGAGGAGGCGCAGGGTCGCGACCTCAATGA
GCACTTTCTCACGTCGGCGGAGGAGCGCCTGTTGCTGAAGCAGTACGAGA
TCTACCTGTTCGATTTCTGCCGCCGCTTCGAACCGACGATGCCCAAGTGC
GTTGTGGGCACGGCCTTCCACTACTTCAAGCGGTTCTATCTGAACAACTC
CCCCATGGACTATCACCCCAAGGAGATTCTAGCCACATGCGTGTTCGTTG
CCTGCAAAGTTGAGGAGTTCAACGTGTCCATCAACCAGTTCGTGAACAAC
ATCAAGGGCGACAGGAACAAGGCCACCGACATAGTGTTGTCCAATGAATT
ACTGCTGATTGGACAGCTCAACTACTACCTCACCATACACAATCCGTTCA
GACCCATCGAGGGTTTCCTGATAGATATAAAAACTCGCAGCAATATGCAG
AATCCAGATCGTCTGCGGCCACATATTGATAGTTTCATTGATTCCACGTA
CTACTCGGATGCCTGTCTTCTGCATACGCCTTCGCAAATTGCATTGGCTG
CCGTCCTCCACGCGGCCAGCAGAGAGCAAGAGAATCTCGATAGCTATGTG
ACGGATCTTCTGTTTGTCTCCGCCAGGGAGAAGCTACCCGGACTCATAGA
TGCCGTGCGAAAATTCGCATAATGGTGAAAGCATATCAGCAGCCCGATCG
GGAGAAGGTCAAGGNCATCGAGAAAAAGTTGGACAAGTGCCGAAAATCAG
CCAATAATCCTGATAGCGAACTCTATTAGGA

BO01065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7405-PA 975 CycH-RA 1..747 17..763 3685 99.7 Plus
CG7405-PA 975 CycH-RA 768..830 783..845 296 98.4 Plus
CG7405-PA 975 CycH-RA 834..861 849..876 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-RA 1065 CG7405-RA 10..875 17..881 4159 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21822006..21822319 17..330 1555 99.7 Plus
3L 28110227 3L 21822657..21822885 533..761 1145 100 Plus
3L 28110227 3L 21822396..21822597 331..532 995 99.5 Plus
3L 28110227 3L 21822941..21823052 761..872 459 93.8 Plus
Blast to na_te.dros performed on 2015-02-13 13:15:26 has no hits.

BO01065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:20 Download gff for BO01065.5prime
Subject Subject Range Query Range Percent Splice Strand
CycH-PA 1..865 17..880 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:06 Download gff for BO01065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7405-PA 1..865 17..880 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:32:52 Download gff for BO01065.5prime
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 1..874 13..880 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:56 Download gff for BO01065.5prime
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 1..874 13..880 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:56 Download gff for BO01065.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21822657..21822885 533..760 99 -> Plus
3L 21822941..21823057 761..880 92   Plus
3L 21822000..21822319 10..330 98 -> Plus
3L 21822396..21822597 331..532 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:32:52 Download gff for BO01065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21815100..21815419 10..330 98 -> Plus
arm_3L 21815496..21815697 331..532 99 -> Plus
arm_3L 21815757..21815985 533..760 99 -> Plus
arm_3L 21816041..21816157 761..880 92   Plus

BO01065.complete Sequence

1006 bp (1006 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629410

> BO01065.complete
GAAGTTATCAGTCGACATGTATCCTGTGAGCTCGCAAAAGAGGTCCTGGA
CATTCGCCAATGAGGGCCAGCTCATGGAGTTCCGCGTGGAGCAGAACAGC
AAGTATATCGAGTCGCACGAGGAGGAGGCGCAGGGTCGCGACCTCAATGA
GCACTTTCTCACGTCGGCGGAGGAGCGCCTGTTGCTGAAGCAGTACGAGA
TCTACCTGTTCGATTTCTGCCGCCGCTTCGAACCGACGATGCCCAAGTGC
GTTGTGGGCACGGCCTTCCACTACTTCAAGCGGTTCTATCTGAACAACTC
CCCCATGGACTATCACCCCAAGGAGATTCTAGCCACATGCGTGTTCGTTG
CCTGCAAAGTTGAGGAGTTCAACGTGTCCATCAACCAGTTCGTGAACAAC
ATCAAGGGCGACAGGAACAAGGCCACCGACATAGTGTTGTCCAATGAATT
ACTGCTGATTGGACAGCTCAACTACTACCTCACCATACACAATCCGTTCA
GACCCATCGAGGGTTTCCTGATAGATATAAAAACTCGCAGCAATATGCAG
AATCCAGATCGTCTGCGGCCACATATTGATAGTTTCATTGATTCCACGTA
CTACTCGGATGCCTGTCTTCTGCATACGCCTTCGCAAATTGCATTGGCTG
CCGTCCTCCACGCGGCCAGCAGAGAGCAAGAGAATCTCGATAGCTATGTG
ACGGATCTTCTGTTTGTCTCCGCCAGGGAGAAGCTACCCGGACTCATAGA
TGCCGTGCGAAAAATTCGCATAATGGTGAAGCAATATCAGCAGCCCGATC
GGGAGAAGGTCAAGGCCATCGAGAAAAAGTTGGACAAGTGCCGAAATCAA
GCCAATAATCCTGATAGCGAACTCTATAAGGAGCGCCTACGCCGATTGTA
CACCGATGAGGATGACATGCCCGCCGAAGATGCCTCATTCCACATTGCAG
ATGTGAGCTCGGACACATCTGCTATGAACATCAGCCAAGCAAGCTTTCTA
GACCAT

BO01065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-RA 975 CG7405-PA 1..972 17..988 4830 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-RA 1065 CG7405-RA 10..981 17..988 4830 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21822006..21822319 17..330 1555 99.7 Plus
3L 28110227 3L 21822657..21822885 533..761 1145 100 Plus
3L 28110227 3L 21822396..21822597 331..532 995 99.5 Plus
3L 28110227 3L 21823111..21823225 874..988 575 100 Plus
3L 28110227 3L 21822941..21823052 762..873 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:31:01 has no hits.

BO01065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:24 Download gff for BO01065.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 1..975 17..989 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:24 Download gff for BO01065.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 1..984 14..996 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:15 Download gff for BO01065.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 10..981 17..990 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:24 Download gff for BO01065.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 1..984 14..996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:07 Download gff for BO01065.complete
Subject Subject Range Query Range Percent Splice Strand
CycH-RA 10..981 17..990 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:07 Download gff for BO01065.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21822396..21822597 331..532 99 -> Plus
3L 21822657..21822885 533..761 100 -> Plus
3L 21822941..21823052 762..873 100 -> Plus
3L 21823111..21823225 874..990 98   Plus
3L 21822006..21822319 17..330 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:15 Download gff for BO01065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21816211..21816325 874..990 98   Plus
arm_3L 21815106..21815419 17..330 99 -> Plus
arm_3L 21815496..21815697 331..532 99 -> Plus
arm_3L 21815757..21815985 533..761 100 -> Plus
arm_3L 21816041..21816152 762..873 100 -> Plus

BO01065.pep Sequence

Translation from 16 to 1006

> BO01065.pep
MYPVSSQKRSWTFANEGQLMEFRVEQNSKYIESHEEEAQGRDLNEHFLTS
AEERLLLKQYEIYLFDFCRRFEPTMPKCVVGTAFHYFKRFYLNNSPMDYH
PKEILATCVFVACKVEEFNVSINQFVNNIKGDRNKATDIVLSNELLLIGQ
LNYYLTIHNPFRPIEGFLIDIKTRSNMQNPDRLRPHIDSFIDSTYYSDAC
LLHTPSQIALAAVLHAASREQENLDSYVTDLLFVSAREKLPGLIDAVRKI
RIMVKQYQQPDREKVKAIEKKLDKCRNQANNPDSELYKERLRRLYTDEDD
MPAEDASFHIADVSSDTSAMNISQASFLDH

BO01065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
CycH-PA 324 CG7405-PA 1..324 1..324 1690 100 Plus
CycC-PA 267 CG7281-PA 61..260 79..274 161 26.2 Plus