Clone Sequence Records
BO01065.3prime Sequence
918 bp (819 high quality bases) assembled on 2005-11-30
> BO01065.3prime
ATGGTCTAGAAAGCTTGCTTGGCTGATGTTCATAGCAGATGTGTCCGAGC
TCACATCTGCAATGTGGAATGAGGCATCTTCGGCGGGCATGTCATCCTCA
TCGGTGTACAATCGGCGTAGGCGCTCCTTATAGAGTTCGCTATCAGGATT
ATTGGCTTGATTTCGGCACTTGTCCAACTTTTTCTCGATGGCCTTGACCT
TCTCCCGATCGGGCTGCTGATATTGCTTCACCATTATGCGAATTTTTCGC
ACGGCATCTATGAGTCCGGGTAGCTTCTCCCTGGCGGAGACAAACAGAAG
ATCCGTCACATAGCTATCGAGATTCTCTTGCTCTCTGCTGGCCGCGTGGA
GGACGGCAGCCAATGCAATTTGCGAAGGCGTATGCAGAAGACAGGCATCC
GAGTAGTACGTGGAATCAATGAAACTATCAATATGTGGCCGCAGACGATC
TGGATTCTGCATATTGCTGCGAGTTTTTATATCTATCAGGAAACCCTCGA
TGGGTCTGAACGGATTGTGTATGGTGAGGTAGTAGTTGAGCTGTCCAATC
AGCAGTAATTCATTGGACAACACTATGTCGGTGGCCTTGTTCCTGTCGCC
CTTGATGTTGTTCACGAACTGGTTGATGGACACGTTGAACTCCTCAACTT
TGCAGGCAACGAACACGCATGTGGCTAGAATCTCCTTGGGGTGATAGTCC
ATGGGGGAGTTGTTCAGATAGAACCGCTTGAAGTAGTGGAAGGCCGTGCC
CACAACGCACTTGGGCATCGTCGGTTCGAAGCGGCGGCAGAAATCGAACA
GGTAGATCTCGTACTGCTTCAGCAACAGGCGCTCCTCCGCCGACGTGAGA
AAGTGCTCATTGAGGTCGCGACCCTGCGCCTCCTCCTCGTGCGACTCGAT
ATACTTGCTGTTCTGCTC
BO01065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7405-PA | 975 | CycH-RA | 73..972 | 918..19 | 4450 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycH-RA | 1065 | CG7405-RA | 82..981 | 918..19 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21822078..21822319 | 918..677 | 1195 | 99.6 | Minus |
3L | 28110227 | 3L | 21822657..21822885 | 474..246 | 1145 | 100 | Minus |
3L | 28110227 | 3L | 21822396..21822597 | 676..475 | 995 | 99.5 | Minus |
3L | 28110227 | 3L | 21823111..21823225 | 133..19 | 575 | 100 | Minus |
3L | 28110227 | 3L | 21822941..21823052 | 245..134 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:58:42 has no hits.
BO01065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:19 Download gff for
BO01065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-PA | 73..975 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:04 Download gff for
BO01065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7405-PA | 73..975 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:18 Download gff for
BO01065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 82..988 | 11..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:29 Download gff for
BO01065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 82..988 | 11..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:29 Download gff for
BO01065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21822941..21823052 | 134..245 | 100 | -> | Minus |
3L | 21823111..21823229 | 14..133 | 96 | -> | Minus |
3L | 21822078..21822319 | 677..918 | 99 | -> | Minus |
3L | 21822396..21822597 | 475..676 | 99 | -> | Minus |
3L | 21822657..21822885 | 246..474 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:18 Download gff for
BO01065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21815178..21815419 | 677..918 | 99 | -> | Minus |
arm_3L | 21815496..21815697 | 475..676 | 99 | -> | Minus |
arm_3L | 21815757..21815985 | 246..474 | 100 | -> | Minus |
arm_3L | 21816041..21816152 | 134..245 | 100 | -> | Minus |
arm_3L | 21816211..21816329 | 14..133 | 96 | -> | Minus |
BO01065.5prime Sequence
881 bp (772 high quality bases) assembled on 2005-11-29
> BO01065.5prime
GAAGTTATCAGTCGACATGTATCCTGTGAGCTCGCAAAAGAGGTCCTGGA
CATTCGCCAATGAGGGCCAGCTCATGGAGTTCCGCGTGGAGCAGAACAGC
AAGTATATCGAGTCGCACGAGGAGGAGGCGCAGGGTCGCGACCTCAATGA
GCACTTTCTCACGTCGGCGGAGGAGCGCCTGTTGCTGAAGCAGTACGAGA
TCTACCTGTTCGATTTCTGCCGCCGCTTCGAACCGACGATGCCCAAGTGC
GTTGTGGGCACGGCCTTCCACTACTTCAAGCGGTTCTATCTGAACAACTC
CCCCATGGACTATCACCCCAAGGAGATTCTAGCCACATGCGTGTTCGTTG
CCTGCAAAGTTGAGGAGTTCAACGTGTCCATCAACCAGTTCGTGAACAAC
ATCAAGGGCGACAGGAACAAGGCCACCGACATAGTGTTGTCCAATGAATT
ACTGCTGATTGGACAGCTCAACTACTACCTCACCATACACAATCCGTTCA
GACCCATCGAGGGTTTCCTGATAGATATAAAAACTCGCAGCAATATGCAG
AATCCAGATCGTCTGCGGCCACATATTGATAGTTTCATTGATTCCACGTA
CTACTCGGATGCCTGTCTTCTGCATACGCCTTCGCAAATTGCATTGGCTG
CCGTCCTCCACGCGGCCAGCAGAGAGCAAGAGAATCTCGATAGCTATGTG
ACGGATCTTCTGTTTGTCTCCGCCAGGGAGAAGCTACCCGGACTCATAGA
TGCCGTGCGAAAATTCGCATAATGGTGAAAGCATATCAGCAGCCCGATCG
GGAGAAGGTCAAGGNCATCGAGAAAAAGTTGGACAAGTGCCGAAAATCAG
CCAATAATCCTGATAGCGAACTCTATTAGGA
BO01065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7405-PA | 975 | CycH-RA | 1..747 | 17..763 | 3685 | 99.7 | Plus |
CG7405-PA | 975 | CycH-RA | 768..830 | 783..845 | 296 | 98.4 | Plus |
CG7405-PA | 975 | CycH-RA | 834..861 | 849..876 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycH-RA | 1065 | CG7405-RA | 10..875 | 17..881 | 4159 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:15:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21822006..21822319 | 17..330 | 1555 | 99.7 | Plus |
3L | 28110227 | 3L | 21822657..21822885 | 533..761 | 1145 | 100 | Plus |
3L | 28110227 | 3L | 21822396..21822597 | 331..532 | 995 | 99.5 | Plus |
3L | 28110227 | 3L | 21822941..21823052 | 761..872 | 459 | 93.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:15:26 has no hits.
BO01065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:20 Download gff for
BO01065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-PA | 1..865 | 17..880 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:06 Download gff for
BO01065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7405-PA | 1..865 | 17..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:32:52 Download gff for
BO01065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 1..874 | 13..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:56 Download gff for
BO01065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 1..874 | 13..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:56 Download gff for
BO01065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21822657..21822885 | 533..760 | 99 | -> | Plus |
3L | 21822941..21823057 | 761..880 | 92 | | Plus |
3L | 21822000..21822319 | 10..330 | 98 | -> | Plus |
3L | 21822396..21822597 | 331..532 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:32:52 Download gff for
BO01065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21815100..21815419 | 10..330 | 98 | -> | Plus |
arm_3L | 21815496..21815697 | 331..532 | 99 | -> | Plus |
arm_3L | 21815757..21815985 | 533..760 | 99 | -> | Plus |
arm_3L | 21816041..21816157 | 761..880 | 92 | | Plus |
BO01065.complete Sequence
1006 bp (1006 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629410
> BO01065.complete
GAAGTTATCAGTCGACATGTATCCTGTGAGCTCGCAAAAGAGGTCCTGGA
CATTCGCCAATGAGGGCCAGCTCATGGAGTTCCGCGTGGAGCAGAACAGC
AAGTATATCGAGTCGCACGAGGAGGAGGCGCAGGGTCGCGACCTCAATGA
GCACTTTCTCACGTCGGCGGAGGAGCGCCTGTTGCTGAAGCAGTACGAGA
TCTACCTGTTCGATTTCTGCCGCCGCTTCGAACCGACGATGCCCAAGTGC
GTTGTGGGCACGGCCTTCCACTACTTCAAGCGGTTCTATCTGAACAACTC
CCCCATGGACTATCACCCCAAGGAGATTCTAGCCACATGCGTGTTCGTTG
CCTGCAAAGTTGAGGAGTTCAACGTGTCCATCAACCAGTTCGTGAACAAC
ATCAAGGGCGACAGGAACAAGGCCACCGACATAGTGTTGTCCAATGAATT
ACTGCTGATTGGACAGCTCAACTACTACCTCACCATACACAATCCGTTCA
GACCCATCGAGGGTTTCCTGATAGATATAAAAACTCGCAGCAATATGCAG
AATCCAGATCGTCTGCGGCCACATATTGATAGTTTCATTGATTCCACGTA
CTACTCGGATGCCTGTCTTCTGCATACGCCTTCGCAAATTGCATTGGCTG
CCGTCCTCCACGCGGCCAGCAGAGAGCAAGAGAATCTCGATAGCTATGTG
ACGGATCTTCTGTTTGTCTCCGCCAGGGAGAAGCTACCCGGACTCATAGA
TGCCGTGCGAAAAATTCGCATAATGGTGAAGCAATATCAGCAGCCCGATC
GGGAGAAGGTCAAGGCCATCGAGAAAAAGTTGGACAAGTGCCGAAATCAA
GCCAATAATCCTGATAGCGAACTCTATAAGGAGCGCCTACGCCGATTGTA
CACCGATGAGGATGACATGCCCGCCGAAGATGCCTCATTCCACATTGCAG
ATGTGAGCTCGGACACATCTGCTATGAACATCAGCCAAGCAAGCTTTCTA
GACCAT
BO01065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycH-RA | 975 | CG7405-PA | 1..972 | 17..988 | 4830 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycH-RA | 1065 | CG7405-RA | 10..981 | 17..988 | 4830 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21822006..21822319 | 17..330 | 1555 | 99.7 | Plus |
3L | 28110227 | 3L | 21822657..21822885 | 533..761 | 1145 | 100 | Plus |
3L | 28110227 | 3L | 21822396..21822597 | 331..532 | 995 | 99.5 | Plus |
3L | 28110227 | 3L | 21823111..21823225 | 874..988 | 575 | 100 | Plus |
3L | 28110227 | 3L | 21822941..21823052 | 762..873 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:01 has no hits.
BO01065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:24 Download gff for
BO01065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 1..975 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:24 Download gff for
BO01065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 1..984 | 14..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:15 Download gff for
BO01065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 10..981 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:24 Download gff for
BO01065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 1..984 | 14..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:07 Download gff for
BO01065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycH-RA | 10..981 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:07 Download gff for
BO01065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21822396..21822597 | 331..532 | 99 | -> | Plus |
3L | 21822657..21822885 | 533..761 | 100 | -> | Plus |
3L | 21822941..21823052 | 762..873 | 100 | -> | Plus |
3L | 21823111..21823225 | 874..990 | 98 | | Plus |
3L | 21822006..21822319 | 17..330 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:15 Download gff for
BO01065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21816211..21816325 | 874..990 | 98 | | Plus |
arm_3L | 21815106..21815419 | 17..330 | 99 | -> | Plus |
arm_3L | 21815496..21815697 | 331..532 | 99 | -> | Plus |
arm_3L | 21815757..21815985 | 533..761 | 100 | -> | Plus |
arm_3L | 21816041..21816152 | 762..873 | 100 | -> | Plus |
BO01065.pep Sequence
Translation from 16 to 1006
> BO01065.pep
MYPVSSQKRSWTFANEGQLMEFRVEQNSKYIESHEEEAQGRDLNEHFLTS
AEERLLLKQYEIYLFDFCRRFEPTMPKCVVGTAFHYFKRFYLNNSPMDYH
PKEILATCVFVACKVEEFNVSINQFVNNIKGDRNKATDIVLSNELLLIGQ
LNYYLTIHNPFRPIEGFLIDIKTRSNMQNPDRLRPHIDSFIDSTYYSDAC
LLHTPSQIALAAVLHAASREQENLDSYVTDLLFVSAREKLPGLIDAVRKI
RIMVKQYQQPDREKVKAIEKKLDKCRNQANNPDSELYKERLRRLYTDEDD
MPAEDASFHIADVSSDTSAMNISQASFLDH
BO01065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycH-PA | 324 | CG7405-PA | 1..324 | 1..324 | 1690 | 100 | Plus |
CycC-PA | 267 | CG7281-PA | 61..260 | 79..274 | 161 | 26.2 | Plus |