Clone Sequence Records
BO01070.3prime Sequence
878 bp (818 high quality bases) assembled on 2005-11-30
> BO01070.3prime
ATGGTCTAGAAAGCTTGCGGTGTTCTTTTTCATTGTCATCTCGTGGGCGG
TGCGCAGACGTCGTCTGAGTTCGTTTGGAAATCGGTCATAGCACTTTTTG
CACACCGGCTTCTCGTCGTACTCGTAGAATTTCGATTTTTGTGTCATCTT
CGTGTCGCACACGGAGCACGCAAAGTGGTGCACACACCAGGCCTTGTTCA
AGGCAGTGAAAACATCGCCTCCAATAACCTGGTTGCAGACGAAGCACAGG
TTGCCAAAGAGCTGATGATAGTGCGTCTCGCAGTAGGCCAATCCCCGCTT
CTCGTAGTGTCGGTGACCCAAGAAGGGTTTCTCGCACTTGGCGCACACGA
AATGTTCCACATGCCAGTGCTTTCCGAGCGCCGTTACCACCCTCTCCTCA
ATCGGACGACGACAGGCACCACATATGGGAATGCCCATTTTATCGTGACA
ACGCAGACAATACAGTTCGTTCATATCGTTAGCAGCCAATCCTGGCCGGC
TCTTGACCTCCCGAGCAGTGGAATCCAACTCTGTGCCGCAGGCCGTGCAA
CTGAAGTGATAGCCGTGGTACACTTCGCCCCGGAATCGCAAAGGCTCCTC
GTCGATGAGGCCGTGGCATTTTTGGCATACATAGCGGCCGGTAATCTCCG
CCTTCACCTTGGCATTGCACTCGTGACACAAGGCGCGGTTCTGGTTCTTG
ATGAATCCGCAATCAGCCAGCTCCTTGGCGCACAATTGGCAGCGGAAGCA
CTGTGGATGCCAGCTAGCTGACATGGCCTTGATGACCCGTCCGATGACGA
ACTCGCCGCACTTGTTGCAGCAGGGAGCGAAGAGCACGTGAAAGTCGCGT
TCACAGTACTTACGGCCCTCGAACTCGT
BO01070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7954-PA | 1008 | stck-RA | 146..1005 | 878..19 | 4300 | 100 | Minus |
CG7954-PB | 1038 | stck-RB | 176..1035 | 878..19 | 4300 | 100 | Minus |
CG7954-PC | 1047 | stck-RC | 185..1044 | 878..19 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stck-RD | 1500 | CG7954-RD | 400..1259 | 878..19 | 4300 | 100 | Minus |
stck-RC | 1335 | CG7954-RC | 239..1098 | 878..19 | 4300 | 100 | Minus |
stck-RB | 1388 | CG7954-RB | 288..1147 | 878..19 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8358690..8358954 | 878..614 | 1325 | 100 | Minus |
3R | 32079331 | 3R | 8359206..8359465 | 472..213 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 8359529..8359723 | 213..19 | 975 | 100 | Minus |
3R | 32079331 | 3R | 8359009..8359150 | 613..472 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:16:54 has no hits.
BO01070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:27 Download gff for
BO01070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-PA | 146..1008 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:16 Download gff for
BO01070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7954-PC | 185..1047 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:32:58 Download gff for
BO01070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 288..1156 | 10..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:52:52 Download gff for
BO01070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 288..1156 | 10..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:52:52 Download gff for
BO01070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8359530..8359732 | 10..212 | 98 | | Minus |
3R | 8358690..8358954 | 614..878 | 100 | -> | Minus |
3R | 8359009..8359150 | 472..613 | 100 | -> | Minus |
3R | 8359207..8359465 | 213..471 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:32:58 Download gff for
BO01070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4184412..4184676 | 614..878 | 100 | -> | Minus |
arm_3R | 4184731..4184872 | 472..613 | 100 | -> | Minus |
arm_3R | 4184929..4185187 | 213..471 | 100 | -> | Minus |
arm_3R | 4185252..4185454 | 10..212 | 98 | | Minus |
BO01070.5prime Sequence
886 bp (779 high quality bases) assembled on 2005-11-30
> BO01070.5prime
GAAGTTATCAGTCGACATGTCGCTGGGTGCCATGCATTGTACGCGATGTG
CCGACGGCTTCGAGCCGACTGAGAAGATTGTTAACTCCAATGGAGAACTC
TGGCACACCCAGTGCTTCGTATGTGCCCAGTGCTTCCGACCCTTCCAGGA
TGGGATATTCTACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTTC
ACGTGCTCTTCGCTCCCTGCTGCAACAAGTGCGGCGAGTTCGTCATCGGA
CGGGTCATCAAGGCCATGTCAGCTAGCTGGCATCCACAGTGCTTCCGCTG
CCAATTGTGCGCCAAGGAGCTGGCTGATTGCGGATTCATCAAGAACCAGA
ACCGCGCCTTGTGTCACGAGTGCAATGCCAAGGTGAAGGCGGAGATTACC
GGCCGCTATGTATGCCAAAAATGCCACGGCCTCATCGACGAGGAGCCTTT
GCGATTCCGGGGCGAAGTGTACCACGGCTATCACTTCAGTTGCACGGCCT
GCGGCACAGAGTTGGATTCCACTGCTCGGGAGGTCAAGAGCCGGCCAGGA
TTGGCTGCTAACGATATGAACGAACTGTATTGTCTGCGTTGTCACGATAA
AATGGGCATTCCCATATGTGGTGCCTGTCGTCGTCCGATTGAGGAGAGGG
TGGTAACGGCGCTCGGAAAGCACTGGCATGTGGAACATTTCGTGTGCGCC
AAGTGCGAGAAACCCTTCTTGGGTCACCGACACTACGAGAAGCGGGGATT
GGCCTACTGCGAGACGCACTATCATCAGCTCTTTGGCAACCTGTGCTTCG
TCTGCAACCAGGTTATTGGAGGCGATGTTTTCACTGCCTTGAACAAAGCC
TGGTGTGTGCACCACTTTGCGTGCTCCGTGTGCGAC
BO01070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7954-PB | 1038 | stck-RB | 29..900 | 15..886 | 4335 | 99.8 | Plus |
CG7954-PC | 1047 | stck-RC | 38..909 | 15..886 | 4335 | 99.8 | Plus |
CG7954-PA | 1008 | stck-RA | 1..870 | 17..886 | 4325 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stck-RD | 1500 | CG7954-RD | 253..1124 | 15..886 | 4345 | 99.9 | Plus |
stck-RC | 1335 | CG7954-RC | 92..963 | 15..886 | 4345 | 99.9 | Plus |
stck-RB | 1388 | CG7954-RB | 141..1012 | 15..886 | 4345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8358649..8358954 | 121..426 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 8359206..8359465 | 568..827 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 8359009..8359150 | 427..568 | 710 | 100 | Plus |
3R | 32079331 | 3R | 8358485..8358590 | 15..120 | 530 | 100 | Plus |
3R | 32079331 | 3R | 8359529..8359588 | 827..886 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:15:44 has no hits.
BO01070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:28 Download gff for
BO01070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-PB | 23..900 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:17 Download gff for
BO01070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7954-PC | 32..909 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:32:59 Download gff for
BO01070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 135..1012 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:41 Download gff for
BO01070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 135..1012 | 9..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:41 Download gff for
BO01070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8359207..8359465 | 569..827 | 100 | -> | Plus |
3R | 8359530..8359588 | 828..886 | 98 | | Plus |
3R | 8358479..8358590 | 9..120 | 98 | -> | Plus |
3R | 8358649..8358954 | 121..426 | 100 | -> | Plus |
3R | 8359009..8359150 | 427..568 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:32:59 Download gff for
BO01070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4184201..4184312 | 9..120 | 98 | -> | Plus |
arm_3R | 4184371..4184676 | 121..426 | 100 | -> | Plus |
arm_3R | 4184731..4184872 | 427..568 | 100 | -> | Plus |
arm_3R | 4184929..4185187 | 569..827 | 100 | -> | Plus |
arm_3R | 4185252..4185310 | 828..886 | 98 | | Plus |
BO01070.complete Sequence
1039 bp (1039 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629411
> BO01070.complete
GAAGTTATCAGTCGACATGTCGCTGGGTGCCATGCATTGTACGCGATGTG
CCGACGGCTTCGAGCCGACTGAGAAGATTGTTAACTCCAATGGAGAACTC
TGGCACACCCAGTGCTTCGTATGTGCCCAGTGCTTCCGACCCTTCCAGGA
TGGGATATTCTACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTTC
ACGTGCTCTTCGCTCCCTGCTGCAACAAGTGCGGCGAGTTCGTCATCGGA
CGGGTCATCAAGGCCATGTCAGCTAGCTGGCATCCACAGTGCTTCCGCTG
CCAATTGTGCGCCAAGGAGCTGGCTGATTGCGGATTCATCAAGAACCAGA
ACCGCGCCTTGTGTCACGAGTGCAATGCCAAGGTGAAGGCGGAGATTACC
GGCCGCTATGTATGCCAAAAATGCCACGGCCTCATCGACGAGGAGCCTTT
GCGATTCCGGGGCGAAGTGTACCACGGCTATCACTTCAGTTGCACGGCCT
GCGGCACAGAGTTGGATTCCACTGCTCGGGAGGTCAAGAGCCGGCCAGGA
TTGGCTGCTAACGATATGAACGAACTGTATTGTCTGCGTTGTCACGATAA
AATGGGCATTCCCATATGTGGTGCCTGTCGTCGTCCGATTGAGGAGAGGG
TGGTAACGGCGCTCGGAAAGCACTGGCATGTGGAACATTTCGTGTGCGCC
AAGTGCGAGAAACCCTTCTTGGGTCACCGACACTACGAGAAGCGGGGATT
GGCCTACTGCGAGACGCACTATCATCAGCTCTTTGGCAACCTGTGCTTCG
TCTGCAACCAGGTTATTGGAGGCGATGTTTTCACTGCCTTGAACAAGGCC
TGGTGTGTGCACCACTTTGCGTGCTCCGTGTGCGACACGAAGATGACACA
AAAATCGAAATTCTACGAGTACGACGAGAAGCCGGTGTGCAAAAAGTGCT
ATGACCGATTTCCAAACGAACTCAGACGACGTCTGCGCACCGCCCACGAG
ATGACAATGAAAAAGAACACCGCAAGCTTTCTAGACCAT
BO01070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stck-RC | 1047 | CG7954-PC | 38..1044 | 15..1021 | 5035 | 100 | Plus |
stck-RB | 1038 | CG7954-PB | 29..1035 | 15..1021 | 5035 | 100 | Plus |
stck-RD | 1008 | CG7954-PD | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stck-RD | 1500 | CG7954-RD | 253..1259 | 15..1021 | 5035 | 100 | Plus |
stck-RC | 1335 | CG7954-RC | 92..1098 | 15..1021 | 5035 | 100 | Plus |
stck-RB | 1388 | CG7954-RB | 141..1147 | 15..1021 | 5035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8358649..8358954 | 121..426 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 8359206..8359465 | 568..827 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 8359529..8359723 | 827..1021 | 975 | 100 | Plus |
3R | 32079331 | 3R | 8359009..8359150 | 427..568 | 710 | 100 | Plus |
3R | 32079331 | 3R | 8358485..8358590 | 15..120 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:48:53 has no hits.
BO01070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:26 Download gff for
BO01070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RC | 32..1047 | 9..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:26 Download gff for
BO01070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RC | 78..1099 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:59 Download gff for
BO01070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 143..1147 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:27 Download gff for
BO01070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RC | 78..1099 | 9..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:27 Download gff for
BO01070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 143..1147 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:27 Download gff for
BO01070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8358487..8358590 | 17..120 | 100 | -> | Plus |
3R | 8358649..8358954 | 121..426 | 100 | -> | Plus |
3R | 8359009..8359150 | 427..568 | 100 | -> | Plus |
3R | 8359207..8359465 | 569..827 | 100 | -> | Plus |
3R | 8359530..8359723 | 828..1023 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:59 Download gff for
BO01070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4184731..4184872 | 427..568 | 100 | -> | Plus |
arm_3R | 4184209..4184312 | 17..120 | 100 | -> | Plus |
arm_3R | 4184371..4184676 | 121..426 | 100 | -> | Plus |
arm_3R | 4184929..4185187 | 569..827 | 100 | -> | Plus |
arm_3R | 4185252..4185445 | 828..1023 | 98 | | Plus |
BO01070.pep Sequence
Translation from 16 to 1039
> BO01070.pep
MSLGAMHCTRCADGFEPTEKIVNSNGELWHTQCFVCAQCFRPFQDGIFYE
FEGRKYCERDFHVLFAPCCNKCGEFVIGRVIKAMSASWHPQCFRCQLCAK
ELADCGFIKNQNRALCHECNAKVKAEITGRYVCQKCHGLIDEEPLRFRGE
VYHGYHFSCTACGTELDSTAREVKSRPGLAANDMNELYCLRCHDKMGIPI
CGACRRPIEERVVTALGKHWHVEHFVCAKCEKPFLGHRHYEKRGLAYCET
HYHQLFGNLCFVCNQVIGGDVFTALNKAWCVHHFACSVCDTKMTQKSKFY
EYDEKPVCKKCYDRFPNELRRRLRTAHEMTMKKNTASFLDH
BO01070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stck-PD | 335 | CG7954-PD | 1..335 | 1..335 | 1920 | 100 | Plus |
stck-PA | 335 | CG7954-PA | 1..335 | 1..335 | 1920 | 100 | Plus |
stck-PB | 345 | CG7954-PB | 11..345 | 1..335 | 1920 | 100 | Plus |
stck-PC | 348 | CG7954-PC | 14..348 | 1..335 | 1920 | 100 | Plus |
Pax-PB | 556 | CG31794-PB | 322..553 | 68..314 | 400 | 32.7 | Plus |