Clone Sequence Records
BO01074.3prime Sequence
843 bp (736 high quality bases) assembled on 2005-11-30
> BO01074.3prime
ATGGTCTAGAAAGCTTGCTGGAATCGAGTCTTGAAATCGCGGCTCTGGCA
GAAAGTCCTCCTCCAACTCGATGCGCGTATCGCTGTGATATCCTAGCAAA
GATTCCGTGTCCTCTTCCATATGTCGAATCGGAAATGTTTTGCCATCGCC
AAAGCTCGAAAACACGGGCAGGAACCAGTATTGCCAGTCGTCACCAAATA
CTTCGCAGAAATTGGCATAACGCCCCAAGTTATAACCATTCTTATCGGGG
CCGCCAACGCGGAAGATCGGAGCCCTGAACGACTCCAATGTCGTGCGATT
CACCAGCACAAGGTAGATGTGGTAGCCAAATAAACTCACCAAACTAATGG
CAAACATAATGGCAATGAAGAACAGGAACAAGATGTGAAAACGACCCATT
CCACTGGCATTTAGCTGTCCTGCACCTACCTTCCAGAACTCGACAAAGTC
GTGTAGCGAGGTAAAAGCCACATACAGGCAGTAGACAAGAGCATAGCCCA
GGAACAACACGAAGTACTTGTAGTTGTAAAAGTTAACGCAGTTGTTTACC
CAGGGGCAGTGGTGATCCATCTTCAGTACGCAGCAACTGCACACACTACA
GTGGTGAGCTCGGTCTGGCTTGATGATCTTGCACTTTTCGCAGAACCGCA
CCGAACCATTCATTGTGCGATTCGTTACTGGCAAATCGCGCGCAAAGTTG
TTAAGAATGCGTTTCTGGGTGTCCGGGCTGTCGGCTCGGAAAAGTCGCGA
CACTTCCTCATCCGGTATCCTCCATTGATCTGGTATTCGGCCTACGGAGG
TCATTATGGTGCGCCAGTACGACCACATGAACAGGGTGAGGAA
BO01074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-PB | 1017 | CG1407-RB | 190..1014 | 843..19 | 4125 | 100 | Minus |
CG1407-PA | 1332 | CG1407-RA | 190..878 | 843..155 | 3445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1857 | CG1407-RD | 554..1378 | 843..19 | 4125 | 100 | Minus |
CG1407-RB | 1857 | CG1407-RB | 554..1378 | 843..19 | 4125 | 100 | Minus |
CG1407-RA | 2238 | CG1407-RA | 554..1242 | 843..155 | 3445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10031579..10031827 | 420..668 | 1245 | 100 | Plus |
2R | 25286936 | 2R | 10028922..10029059 | 19..156 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10031284..10031419 | 285..420 | 680 | 100 | Plus |
2R | 25286936 | 2R | 10031085..10031215 | 155..285 | 655 | 100 | Plus |
2R | 25286936 | 2R | 10032019..10032125 | 668..774 | 535 | 100 | Plus |
2R | 25286936 | 2R | 10032214..10032282 | 775..843 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 18:43:26 has no hits.
BO01074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:33 Download gff for
BO01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PB | 192..1017 | 18..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:25 Download gff for
BO01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PB | 192..1017 | 18..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:01 Download gff for
BO01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 554..1383 | 12..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:04 Download gff for
BO01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 554..1383 | 12..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:04 Download gff for
BO01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10028917..10029057 | 12..154 | 97 | <- | Plus |
2R | 10031085..10031214 | 155..284 | 100 | <- | Plus |
2R | 10031284..10031419 | 285..420 | 100 | <- | Plus |
2R | 10031580..10031826 | 421..667 | 100 | <- | Plus |
2R | 10032019..10032125 | 668..774 | 100 | <- | Plus |
2R | 10032214..10032282 | 775..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:01 Download gff for
BO01074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5916422..5916562 | 12..154 | 97 | <- | Plus |
arm_2R | 5918590..5918719 | 155..284 | 100 | <- | Plus |
arm_2R | 5918789..5918924 | 285..420 | 100 | <- | Plus |
arm_2R | 5919085..5919331 | 421..667 | 100 | <- | Plus |
arm_2R | 5919524..5919630 | 668..774 | 100 | <- | Plus |
arm_2R | 5919719..5919787 | 775..843 | 100 | | Plus |
BO01074.5prime Sequence
803 bp (766 high quality bases) assembled on 2005-11-29
> BO01074.5prime
GAAGTTATCAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACAC
CCTGCGGATTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATC
ACCGCGGTAATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCAT
CCGCAACTCGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACC
ACCTCTTCCTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACC
TCCGTAGGCCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTC
GCGACTTTTCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACA
ACTTTGCGCGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTG
CGGTTCTGCGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTG
TAGTGTGTGCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGG
TAAACAACTGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTG
GGCTATGCTCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGA
CTTTGTCGAGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAA
TGGGTCGTTTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCC
ATTAGTTTGGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAA
TCGCACGACATTGGAGTCGTTCAGGGCTCCGATCTTCCCGCGTGGCGGCC
CCG
BO01074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-PB | 1017 | CG1407-RB | 1..772 | 17..788 | 3860 | 100 | Plus |
CG1407-PA | 1332 | CG1407-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1857 | CG1407-RD | 365..1151 | 17..803 | 3890 | 99.7 | Plus |
CG1407-RA | 2238 | CG1407-RA | 365..1151 | 17..803 | 3890 | 99.7 | Plus |
CG1407-RB | 1857 | CG1407-RB | 365..1151 | 17..803 | 3890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10031579..10031827 | 629..381 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 10032393..10032529 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 10031284..10031419 | 764..629 | 680 | 100 | Minus |
2R | 25286936 | 2R | 10032214..10032335 | 274..153 | 610 | 100 | Minus |
2R | 25286936 | 2R | 10032019..10032125 | 381..275 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:59:04 has no hits.
BO01074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:34 Download gff for
BO01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PB | 1..787 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:26 Download gff for
BO01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PA | 1..787 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:20 Download gff for
BO01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 356..1151 | 7..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:30 Download gff for
BO01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 356..1151 | 7..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:30 Download gff for
BO01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10031176..10031214 | 765..803 | 95 | <- | Minus |
2R | 10031284..10031419 | 629..764 | 100 | <- | Minus |
2R | 10031580..10031826 | 382..628 | 100 | <- | Minus |
2R | 10032019..10032125 | 275..381 | 100 | <- | Minus |
2R | 10032214..10032335 | 153..274 | 100 | <- | Minus |
2R | 10032394..10032538 | 7..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:20 Download gff for
BO01074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5918681..5918719 | 765..803 | 95 | <- | Minus |
arm_2R | 5918789..5918924 | 629..764 | 100 | <- | Minus |
arm_2R | 5919085..5919331 | 382..628 | 100 | <- | Minus |
arm_2R | 5919524..5919630 | 275..381 | 100 | <- | Minus |
arm_2R | 5919719..5919840 | 153..274 | 100 | <- | Minus |
arm_2R | 5919899..5920043 | 7..152 | 97 | | Minus |
BO01074.complete Sequence
1048 bp (1048 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629412
> BO01074.complete
GAAGTTATCAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACAC
CCTGCGGATTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATC
ACCGCGGTAATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCAT
CCGCAACTCGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACC
ACCTCTTCCTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACC
TCCGTAGGCCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTC
GCGACTTTTCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACA
ACTTTGCGCGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTG
CGGTTCTGCGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTG
TAGTGTGTGCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGG
TAAACAACTGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTG
GGCTATGCTCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGA
CTTTGTCGAGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAA
TGGGTCGTTTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCC
ATTAGTTTGGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAA
TCGCACGACATTGGAGTCGTTCAGGGCTCCGATCTTCCGCGTTGGCGGCC
CCGATAAGAATGGTTATAACTTGGGGCGTTATGCCAATTTCTGCGAAGTA
TTTGGTGACGACTGGCAATACTGGTTCCTGCCCGTGTTTTCGAGCTTTGG
CGATGGCAAAACATTTCCGATTCGACATATGGAAGAGGACACGGAATCTT
TGCTAGGATATCACAGCGATACGCGCATCGAGTTGGAGGAGGACTTTCTG
CCAGAGCCGCGATTTCAAGACTCGATTCCAGCAAGCTTTCTAGACCAT
BO01074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1059 | CG1407-PD | 1..1014 | 17..1030 | 5070 | 100 | Plus |
CG1407-RB | 1017 | CG1407-PB | 1..1014 | 17..1030 | 5070 | 100 | Plus |
CG1407-RA | 1332 | CG1407-PA | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1857 | CG1407-RD | 365..1378 | 17..1030 | 5070 | 100 | Plus |
CG1407-RB | 1857 | CG1407-RB | 365..1378 | 17..1030 | 5070 | 100 | Plus |
CG1407-RA | 2238 | CG1407-RA | 365..1242 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10031579..10031827 | 629..381 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 10028922..10029059 | 1030..893 | 690 | 100 | Minus |
2R | 25286936 | 2R | 10032393..10032529 | 153..17 | 685 | 100 | Minus |
2R | 25286936 | 2R | 10031284..10031419 | 764..629 | 680 | 100 | Minus |
2R | 25286936 | 2R | 10031085..10031215 | 894..764 | 655 | 100 | Minus |
2R | 25286936 | 2R | 10032214..10032335 | 274..153 | 610 | 100 | Minus |
2R | 25286936 | 2R | 10032019..10032125 | 381..275 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:05:08 has no hits.
BO01074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:28 Download gff for
BO01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 1..1017 | 17..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:28 Download gff for
BO01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 351..1378 | 7..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:41 Download gff for
BO01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 365..1378 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:28 Download gff for
BO01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 351..1378 | 7..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:35 Download gff for
BO01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 365..1378 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:35 Download gff for
BO01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10032214..10032335 | 153..274 | 100 | <- | Minus |
2R | 10032394..10032529 | 17..152 | 100 | | Minus |
2R | 10028918..10029057 | 895..1032 | 98 | <- | Minus |
2R | 10031085..10031214 | 765..894 | 100 | <- | Minus |
2R | 10031284..10031419 | 629..764 | 100 | <- | Minus |
2R | 10031580..10031826 | 382..628 | 100 | <- | Minus |
2R | 10032019..10032125 | 275..381 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:41 Download gff for
BO01074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5916423..5916562 | 895..1032 | 98 | <- | Minus |
arm_2R | 5918590..5918719 | 765..894 | 100 | <- | Minus |
arm_2R | 5918789..5918924 | 629..764 | 100 | <- | Minus |
arm_2R | 5919085..5919331 | 382..628 | 100 | <- | Minus |
arm_2R | 5919524..5919630 | 275..381 | 100 | <- | Minus |
arm_2R | 5919719..5919840 | 153..274 | 100 | <- | Minus |
arm_2R | 5919899..5920034 | 17..152 | 100 | | Minus |
BO01074.pep Sequence
Translation from 16 to 1048
> BO01074.pep
MGNDDHRRRKTPCGFCMAVFKWIPVLFITAVIAWSYYAYVVELCIRNSEN
RIGMIFMLLFYHLFLTLFMWSYWRTIMTSVGRIPDQWRIPDEEVSRLFRA
DSPDTQKRILNNFARDLPVTNRTMNGSVRFCEKCKIIKPDRAHHCSVCSC
CVLKMDHHCPWVNNCVNFYNYKYFVLFLGYALVYCLYVAFTSLHDFVEFW
KVGAGQLNASGMGRFHILFLFFIAIMFAISLVSLFGYHIYLVLVNRTTLE
SFRAPIFRVGGPDKNGYNLGRYANFCEVFGDDWQYWFLPVFSSFGDGKTF
PIRHMEEDTESLLGYHSDTRIELEEDFLPEPRFQDSIPASFLDH
BO01074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-PB | 338 | CG1407-PB | 1..338 | 1..338 | 1869 | 100 | Plus |
CG1407-PD | 352 | CG1407-PD | 1..338 | 1..338 | 1869 | 100 | Plus |
CG1407-PA | 443 | CG1407-PA | 1..301 | 1..301 | 1650 | 98.7 | Plus |
CG1407-PG | 452 | CG1407-PG | 1..310 | 1..301 | 1630 | 95.8 | Plus |
CG1407-PE | 440 | CG1407-PE | 1..298 | 1..301 | 1622 | 97.7 | Plus |