Clone Sequence Records
BO01078.3prime Sequence
910 bp (839 high quality bases) assembled on 2005-11-30
> BO01078.3prime
ATGGTCTAGAAAGCTTGCCTTGTGTATCTCGAGGATATGTCTAGCAAGTG
TTTTTCTCTGCTTATAGAAACTGGCACAGTGAGGACACTTAAATGTTCTT
TCAGCGTTGTGTACGAGCTTGTGCTCCTTGAGAGTGCTGCTCAGCCGAAA
AGTCTTGGGACAGTGGGAGCAGCGAAATGGACGATCTGGTAAGTGCAGGC
GGCTGTGCTGCTTGAGGTGCTGCTTCATAGCGAAGGCCTTGGGGCAGTGG
GAACACTTGAATGGTCGTTCACCAGTGTGAGAACGGAAATGGTTATCAAG
GTGAAACTTCCTCGTAAATGTTTTCGTGCACTTGGAGCACTTGAACGGTC
TCTCGCTGCCATGTGTGCGGATGTGACGCCGGAGATCGGATGATTTAATA
AAGGTTTTTGAGCACTGTGAACACTTGAATGGTCGTTCGCCAGTGTGAGT
TCGCTCATGCGACTGCAGAGTGGACTGCTGCGCAAAGGTCTTGGCGCAGT
GGGAACACTCGTAGGGTTTCGCTGCATTGTGGGTCTTCATGTGCGCCTTG
AGAGTGACTCTAAGTCTAAAGTTCCGCTTGCAGTAGGGGCATGGGAAGGA
TTGTCCGTCCATGTGTGTTCGCATGTGCCTCAGAAAAGTTCCCTTTCGCT
GGTATTTCTTGTGGCATTCTCGACATTCGAATGCTACCTTCTTGCTGTCG
CTTTTCCCATCGTCATCAGCAGCGGATGCAGAATCAATCCGCGCATCTTC
GTCTTCCGAAATCTCCCAGTCTTCTTCTTCGAGCAAGGCGCATAAAGCAT
CCTCGATGCCTTCATCGCGAACTCGGCAGTAGAACTGGTGGCTTTCCTCA
CAAGTTTGCCTTATCCCATACGCGCTCTTTACGTCCTCATAGCACTGTGG
GCATATCATT
BO01078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15436-PA | 1041 | CG15436-RA | 147..1038 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15436-RA | 1411 | CG15436-RA | 328..1219 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4463992..4464883 | 910..19 | 4460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:42:58 has no hits.
BO01078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:41 Download gff for
BO01078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-PA | 147..1041 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:37 Download gff for
BO01078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-PA | 147..1041 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:07 Download gff for
BO01078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 328..1227 | 12..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:22 Download gff for
BO01078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 328..1227 | 12..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:22 Download gff for
BO01078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4463992..4464891 | 12..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:07 Download gff for
BO01078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4463992..4464891 | 12..910 | 99 | | Minus |
BO01078.5prime Sequence
868 bp (809 high quality bases) assembled on 2005-11-29
> BO01078.5prime
GAAGTTATCAGTCGACATGGCGGAAATATGCCGAGTTTGTATGGATATTT
CTGGTAAACTCGTTAACATATTTGACGCCAGACGAAGAACCAGAGTTTCC
ATTGCCGAGATGATCGCGCAGTGCACCGGATTCGAGGTCAAACGTGGCGA
TTTGTTTTCGGAAATGATATGCCCACAGTGCTATGAGGACGTAAAGAGCG
CGTATGGGATAAGGCAAACTTGTGAGGAAAGCCACCAGTTCTACTGCCGA
GTTCGCGATGAAGGCATCGAGGATGCTTTATGCGCCTTGCTCGAAGAAGA
AGACTGGGAGATTTCGGAAGACGAAGATGCGCGGATTGATTCTGCATCCG
CTGCTGATGACGATGGGAAAAGCGACAGCAAGAAGGTAGCATTCGAATGT
CGAGAATGCCACAAGAAATACCAGCGAAAGGGAACTTTTCTGAGGCACAT
GCGAACACACATGGACGGACAATCCTTCCCATGCCCCTACTGCAAGCGGA
ACTTTAGACTTAGAGTCACTCTCAAGGCGCACATGAAGACCCACAATGCA
GCGAAACCCTACGAGTGTTCCCACTGCGCCAAGACCTTTGCGCAGCAGTC
CACTCTGCAGTCGCATGAGCGAACTCACACTGGCGAACGACCATTCAAGT
GTTCACAGTGCTCAAAAACCTTTATTAAATCATCCGATCTCCGGCGTCAC
ATCCGCACACATGGCAGCGAGAGACCGTTCAAGTGCTCCAAGTGCACGAA
AACATTTACGAGGAAGTTTCACCTTGATAACCATTTCCGTTCTCACACTG
GTGAACGACCATTTTCAGTGTCCCACTGCCCCNAGGGCTTCGCTATGAAG
CAGCACCTCAAGCAGCAC
BO01078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15436-PA | 1041 | CG15436-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
CG15436-PA | 1041 | CG15436-RA | 805..852 | 821..868 | 196 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15436-RA | 1411 | CG15436-RA | 182..1033 | 17..868 | 4159 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4463846..4464697 | 17..868 | 4129 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:42:51 has no hits.
BO01078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:42 Download gff for
BO01078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:39 Download gff for
BO01078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:26 Download gff for
BO01078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 172..1033 | 7..868 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:01 Download gff for
BO01078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 172..1033 | 7..868 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:01 Download gff for
BO01078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4463841..4464697 | 11..868 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:26 Download gff for
BO01078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4463841..4464697 | 11..868 | 98 | | Plus |
BO01078.complete Sequence
1072 bp (1072 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629413
> BO01078.complete
GAAGTTATCAGTCGACATGGCGGAAATATGCCGAGTTTGTATGGATATTT
CTGGTAAACTCGTTAACATATTTGACGCCAGACGAAGAACCAGAGTTTCC
ATTGCCGAGATGATCGCGCAGTGCACCGGATTCGAGGTCAAACGTGGCGA
TTTGTTTTCGGAAATGATATGCCCACAGTGCTATGAGGACGTAAAGAGCG
CGTATGGGATAAGGCAAACTTGTGAGGAAAGCCACCAGTTCTACTGCCGA
GTTCGCGATGAAGGCATCGAGGATGCTTTATGCGCCTTGCTCGAAGAAGA
AGACTGGGAGATTTCGGAAGACGAAGATGCGCGGATTGATTCTGCATCCG
CTGCTGATGACGATGGGAAAAGCGACAGCAAGAAGGTAGCATTCGAATGT
CGAGAATGCCACAAGAAATACCAGCGAAAGGGAACTTTTCTGAGGCACAT
GCGAACACACATGGACGGACAATCCTTCCCATGCCCCTACTGCAAGCGGA
ACTTTAGACTTAGAGTCACTCTCAAGGCGCACATGAAGACCCACAATGCA
GCGAAACCCTACGAGTGTTCCCACTGCGCCAAGACCTTTGCGCAGCAGTC
CACTCTGCAGTCGCATGAGCGAACTCACACTGGCGAACGACCATTCAAGT
GTTCACAGTGCTCAAAAACCTTTATTAAATCATCCGATCTCCGGCGTCAC
ATCCGCACACATGGCAGCGAGAGACCGTTCAAGTGCTCCAAGTGCACGAA
AACATTTACGAGGAAGTTTCACCTTGATAACCATTTCCGTTCTCACACTG
GTGAACGACCATTCAAGTGTTCCCACTGCCCCAAGGCCTTCGCTATGAAG
CAGCACCTCAAGCAGCACAGCCGCCTGCACTTACCAGATCGTCCATTTCG
CTGCTCCCACTGTCCCAAGACTTTTCGGCTGAGCAGCACTCTCAAGGAGC
ACAAGCTCGTACACAACGCTGAAAGAACATTTAAGTGTCCTCACTGTGCC
AGTTTCTATAAGCAGAGAAAAACACTTGCTAGACATATCCTCGAGATACA
CAAGGCAAGCTTTCTAGACCAT
BO01078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15436-RA | 1041 | CG15436-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15436-RA | 1411 | CG15436-RA | 182..1219 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4463846..4464883 | 17..1054 | 5190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:37:45 has no hits.
BO01078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:29 Download gff for
BO01078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 1..1041 | 17..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:57 Download gff for
BO01078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 151..1188 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:29 Download gff for
BO01078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 182..1219 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:29 Download gff for
BO01078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 141..1196 | 7..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:51 Download gff for
BO01078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15436-RA | 182..1219 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:51 Download gff for
BO01078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4463846..4464883 | 17..1056 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:29 Download gff for
BO01078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4463846..4464883 | 17..1056 | 99 | | Plus |
BO01078.pep Sequence
Translation from 16 to 1072
> BO01078.pep
MAEICRVCMDISGKLVNIFDARRRTRVSIAEMIAQCTGFEVKRGDLFSEM
ICPQCYEDVKSAYGIRQTCEESHQFYCRVRDEGIEDALCALLEEEDWEIS
EDEDARIDSASAADDDGKSDSKKVAFECRECHKKYQRKGTFLRHMRTHMD
GQSFPCPYCKRNFRLRVTLKAHMKTHNAAKPYECSHCAKTFAQQSTLQSH
ERTHTGERPFKCSQCSKTFIKSSDLRRHIRTHGSERPFKCSKCTKTFTRK
FHLDNHFRSHTGERPFKCSHCPKAFAMKQHLKQHSRLHLPDRPFRCSHCP
KTFRLSSTLKEHKLVHNAERTFKCPHCASFYKQRKTLARHILEIHKASFL
DH
BO01078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15436-PA | 346 | CG15436-PA | 1..346 | 1..346 | 1906 | 100 | Plus |
Neu2-PA | 382 | CG7204-PA | 1..320 | 15..341 | 527 | 34 | Plus |
CG5245-PA | 501 | CG5245-PA | 185..435 | 118..341 | 523 | 38.1 | Plus |
CG44002-PA | 345 | CG44002-PA | 1..338 | 1..292 | 517 | 33.4 | Plus |
Neu2-PB | 308 | CG7204-PB | 1..276 | 15..312 | 514 | 36.1 | Plus |
Neu2-PA | 382 | CG7204-PA | 231..376 | 126..263 | 229 | 31.4 | Plus |