Clone BO01078 Report

Search the DGRC for BO01078

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:10
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG15436-RA
Protein status:BO01078.pep: full length peptide match
Sequenced Size:1072

Clone Sequence Records

BO01078.3prime Sequence

910 bp (839 high quality bases) assembled on 2005-11-30

> BO01078.3prime
ATGGTCTAGAAAGCTTGCCTTGTGTATCTCGAGGATATGTCTAGCAAGTG
TTTTTCTCTGCTTATAGAAACTGGCACAGTGAGGACACTTAAATGTTCTT
TCAGCGTTGTGTACGAGCTTGTGCTCCTTGAGAGTGCTGCTCAGCCGAAA
AGTCTTGGGACAGTGGGAGCAGCGAAATGGACGATCTGGTAAGTGCAGGC
GGCTGTGCTGCTTGAGGTGCTGCTTCATAGCGAAGGCCTTGGGGCAGTGG
GAACACTTGAATGGTCGTTCACCAGTGTGAGAACGGAAATGGTTATCAAG
GTGAAACTTCCTCGTAAATGTTTTCGTGCACTTGGAGCACTTGAACGGTC
TCTCGCTGCCATGTGTGCGGATGTGACGCCGGAGATCGGATGATTTAATA
AAGGTTTTTGAGCACTGTGAACACTTGAATGGTCGTTCGCCAGTGTGAGT
TCGCTCATGCGACTGCAGAGTGGACTGCTGCGCAAAGGTCTTGGCGCAGT
GGGAACACTCGTAGGGTTTCGCTGCATTGTGGGTCTTCATGTGCGCCTTG
AGAGTGACTCTAAGTCTAAAGTTCCGCTTGCAGTAGGGGCATGGGAAGGA
TTGTCCGTCCATGTGTGTTCGCATGTGCCTCAGAAAAGTTCCCTTTCGCT
GGTATTTCTTGTGGCATTCTCGACATTCGAATGCTACCTTCTTGCTGTCG
CTTTTCCCATCGTCATCAGCAGCGGATGCAGAATCAATCCGCGCATCTTC
GTCTTCCGAAATCTCCCAGTCTTCTTCTTCGAGCAAGGCGCATAAAGCAT
CCTCGATGCCTTCATCGCGAACTCGGCAGTAGAACTGGTGGCTTTCCTCA
CAAGTTTGCCTTATCCCATACGCGCTCTTTACGTCCTCATAGCACTGTGG
GCATATCATT

BO01078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15436-PA 1041 CG15436-RA 147..1038 910..19 4460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15436-RA 1411 CG15436-RA 328..1219 910..19 4460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4463992..4464883 910..19 4460 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:42:58 has no hits.

BO01078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:41 Download gff for BO01078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-PA 147..1041 16..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:37 Download gff for BO01078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-PA 147..1041 16..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:07 Download gff for BO01078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 328..1227 12..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:22 Download gff for BO01078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 328..1227 12..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:22 Download gff for BO01078.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4463992..4464891 12..910 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:07 Download gff for BO01078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4463992..4464891 12..910 99   Minus

BO01078.5prime Sequence

868 bp (809 high quality bases) assembled on 2005-11-29

> BO01078.5prime
GAAGTTATCAGTCGACATGGCGGAAATATGCCGAGTTTGTATGGATATTT
CTGGTAAACTCGTTAACATATTTGACGCCAGACGAAGAACCAGAGTTTCC
ATTGCCGAGATGATCGCGCAGTGCACCGGATTCGAGGTCAAACGTGGCGA
TTTGTTTTCGGAAATGATATGCCCACAGTGCTATGAGGACGTAAAGAGCG
CGTATGGGATAAGGCAAACTTGTGAGGAAAGCCACCAGTTCTACTGCCGA
GTTCGCGATGAAGGCATCGAGGATGCTTTATGCGCCTTGCTCGAAGAAGA
AGACTGGGAGATTTCGGAAGACGAAGATGCGCGGATTGATTCTGCATCCG
CTGCTGATGACGATGGGAAAAGCGACAGCAAGAAGGTAGCATTCGAATGT
CGAGAATGCCACAAGAAATACCAGCGAAAGGGAACTTTTCTGAGGCACAT
GCGAACACACATGGACGGACAATCCTTCCCATGCCCCTACTGCAAGCGGA
ACTTTAGACTTAGAGTCACTCTCAAGGCGCACATGAAGACCCACAATGCA
GCGAAACCCTACGAGTGTTCCCACTGCGCCAAGACCTTTGCGCAGCAGTC
CACTCTGCAGTCGCATGAGCGAACTCACACTGGCGAACGACCATTCAAGT
GTTCACAGTGCTCAAAAACCTTTATTAAATCATCCGATCTCCGGCGTCAC
ATCCGCACACATGGCAGCGAGAGACCGTTCAAGTGCTCCAAGTGCACGAA
AACATTTACGAGGAAGTTTCACCTTGATAACCATTTCCGTTCTCACACTG
GTGAACGACCATTTTCAGTGTCCCACTGCCCCNAGGGCTTCGCTATGAAG
CAGCACCTCAAGCAGCAC

BO01078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15436-PA 1041 CG15436-RA 1..797 17..813 3985 100 Plus
CG15436-PA 1041 CG15436-RA 805..852 821..868 196 95.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15436-RA 1411 CG15436-RA 182..1033 17..868 4159 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4463846..4464697 17..868 4129 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 23:42:51 has no hits.

BO01078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:42 Download gff for BO01078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:39 Download gff for BO01078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:26 Download gff for BO01078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 172..1033 7..868 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:01 Download gff for BO01078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 172..1033 7..868 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:01 Download gff for BO01078.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4463841..4464697 11..868 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:26 Download gff for BO01078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4463841..4464697 11..868 98   Plus

BO01078.complete Sequence

1072 bp (1072 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629413

> BO01078.complete
GAAGTTATCAGTCGACATGGCGGAAATATGCCGAGTTTGTATGGATATTT
CTGGTAAACTCGTTAACATATTTGACGCCAGACGAAGAACCAGAGTTTCC
ATTGCCGAGATGATCGCGCAGTGCACCGGATTCGAGGTCAAACGTGGCGA
TTTGTTTTCGGAAATGATATGCCCACAGTGCTATGAGGACGTAAAGAGCG
CGTATGGGATAAGGCAAACTTGTGAGGAAAGCCACCAGTTCTACTGCCGA
GTTCGCGATGAAGGCATCGAGGATGCTTTATGCGCCTTGCTCGAAGAAGA
AGACTGGGAGATTTCGGAAGACGAAGATGCGCGGATTGATTCTGCATCCG
CTGCTGATGACGATGGGAAAAGCGACAGCAAGAAGGTAGCATTCGAATGT
CGAGAATGCCACAAGAAATACCAGCGAAAGGGAACTTTTCTGAGGCACAT
GCGAACACACATGGACGGACAATCCTTCCCATGCCCCTACTGCAAGCGGA
ACTTTAGACTTAGAGTCACTCTCAAGGCGCACATGAAGACCCACAATGCA
GCGAAACCCTACGAGTGTTCCCACTGCGCCAAGACCTTTGCGCAGCAGTC
CACTCTGCAGTCGCATGAGCGAACTCACACTGGCGAACGACCATTCAAGT
GTTCACAGTGCTCAAAAACCTTTATTAAATCATCCGATCTCCGGCGTCAC
ATCCGCACACATGGCAGCGAGAGACCGTTCAAGTGCTCCAAGTGCACGAA
AACATTTACGAGGAAGTTTCACCTTGATAACCATTTCCGTTCTCACACTG
GTGAACGACCATTCAAGTGTTCCCACTGCCCCAAGGCCTTCGCTATGAAG
CAGCACCTCAAGCAGCACAGCCGCCTGCACTTACCAGATCGTCCATTTCG
CTGCTCCCACTGTCCCAAGACTTTTCGGCTGAGCAGCACTCTCAAGGAGC
ACAAGCTCGTACACAACGCTGAAAGAACATTTAAGTGTCCTCACTGTGCC
AGTTTCTATAAGCAGAGAAAAACACTTGCTAGACATATCCTCGAGATACA
CAAGGCAAGCTTTCTAGACCAT

BO01078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15436-RA 1041 CG15436-PA 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15436-RA 1411 CG15436-RA 182..1219 17..1054 5190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4463846..4464883 17..1054 5190 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:37:45 has no hits.

BO01078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:29 Download gff for BO01078.complete
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 1..1041 17..1057 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:57 Download gff for BO01078.complete
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 151..1188 17..1056 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:29 Download gff for BO01078.complete
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 182..1219 17..1056 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:29 Download gff for BO01078.complete
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 141..1196 7..1061 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:51 Download gff for BO01078.complete
Subject Subject Range Query Range Percent Splice Strand
CG15436-RA 182..1219 17..1056 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:51 Download gff for BO01078.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4463846..4464883 17..1056 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:29 Download gff for BO01078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4463846..4464883 17..1056 99   Plus

BO01078.pep Sequence

Translation from 16 to 1072

> BO01078.pep
MAEICRVCMDISGKLVNIFDARRRTRVSIAEMIAQCTGFEVKRGDLFSEM
ICPQCYEDVKSAYGIRQTCEESHQFYCRVRDEGIEDALCALLEEEDWEIS
EDEDARIDSASAADDDGKSDSKKVAFECRECHKKYQRKGTFLRHMRTHMD
GQSFPCPYCKRNFRLRVTLKAHMKTHNAAKPYECSHCAKTFAQQSTLQSH
ERTHTGERPFKCSQCSKTFIKSSDLRRHIRTHGSERPFKCSKCTKTFTRK
FHLDNHFRSHTGERPFKCSHCPKAFAMKQHLKQHSRLHLPDRPFRCSHCP
KTFRLSSTLKEHKLVHNAERTFKCPHCASFYKQRKTLARHILEIHKASFL
DH

BO01078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15436-PA 346 CG15436-PA 1..346 1..346 1906 100 Plus
Neu2-PA 382 CG7204-PA 1..320 15..341 527 34 Plus
CG5245-PA 501 CG5245-PA 185..435 118..341 523 38.1 Plus
CG44002-PA 345 CG44002-PA 1..338 1..292 517 33.4 Plus
Neu2-PB 308 CG7204-PB 1..276 15..312 514 36.1 Plus
Neu2-PA 382 CG7204-PA 231..376 126..263 229 31.4 Plus