Clone Sequence Records
BO01080.3prime Sequence
908 bp (799 high quality bases) assembled on 2005-11-30
> BO01080.3prime
ATGGTCTAGAAAGCTTGCCGGATGTTCCTCACACACATGCCGTTCGAGAT
CGATGGCCCGGAAGAAGGGCCGCACGCAGAATTCACAGGTGTAAGTGCCG
TGTCCATGGCCGCGATCCGTCTTTATGTGATCGGTGAGGTGGCACCGCTG
GGTGAATCTCTTTCCGCACGTGGGACACAGATGCGGTCGGTGGTCCAGGT
GCAGACTGTTAACGTGCTTCTTTAGGTGATCAGCAGTGGCGAAGTCCGCC
TGGCAAATACCGCACACATGACCGCGCAAGAGGATGTGAACACGTTGCAG
ATGGGACCGCAGGGCTTCTCGGCTGCCATGGCTCTTGCCACAGTAGCAGC
AGTCCAGGGCACTGCGTTCGTGAACCTGCTCCAGGTGCCGCACCAGGCTC
AGACTGCCGGGGAATCCGTTGGCGCAGAAGGGACACACGAAAACGCTCGG
CTTAGCGTTCACAATGCACGACTCCTTGTCCAGGTCGGTGGGCCAGCCAA
AGGTGAGATCGTCGTCCCAGTCGATGCTGGGCAGTATGTTCTCAATGTTC
TCCTCTAGCATCTCAAGATCCTCCATTTCATCAACCTGGCTGTCTGCATC
ACTGGCCGTGGACTTCAGGGTACGCAGGCGATGCACCTCCTCGGCGTGCT
CCTGCAGCTCCAGCATCCCGCTAAAGGTCTTAACGTCGTTGCAGTTGTCC
GTGCACATGTCGCAGTAGAACAGCGACTGCTGGCCGTGCCAACTGGCAAC
ATGACGGTAAAGAAACGTGGCTGACGCGTACTTCTTGCCGCACTGCAGGC
ACAGGAACTGGCCATCGTTGTGCTTTCGCTCCCGATGCCGCTCCAGCCGG
GCCTCCTCGCCGAAAAGCGTCAGGCAGTGGGGGCAGACGAAAAGACGCCT
CACCCTGA
BO01080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-PA | 1059 | CG7101-RA | 167..1056 | 908..19 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1454 | CG7101-RA | 239..1128 | 908..19 | 4450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18831218..18831797 | 598..19 | 2900 | 100 | Minus |
| X | 23542271 | X | 18830829..18831143 | 908..594 | 1575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:59:28 has no hits.
BO01080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:45 Download gff for
BO01080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-PA | 168..1059 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:43 Download gff for
BO01080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-PA | 168..1059 | 18..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:22 Download gff for
BO01080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 240..1128 | 19..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:24 Download gff for
BO01080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 240..1128 | 19..907 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:24 Download gff for
BO01080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18830830..18831143 | 594..907 | 100 | -> | Minus |
| X | 18831223..18831797 | 19..593 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:22 Download gff for
BO01080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18724863..18725176 | 594..907 | 100 | -> | Minus |
| arm_X | 18725256..18725830 | 19..593 | 100 | | Minus |
BO01080.5prime Sequence
782 bp (770 high quality bases) assembled on 2005-11-30
> BO01080.5prime
GAAGTTATCAGTCGACATGGAACCGGTGCCCATCCGGCCAAAAGCGCCGG
GAGCGAGCAACCGCGGAGCCCTGCCGCTGGCGGCGAAGAAGCCGGCCAAG
AAGCGTACGTACCACTGCGGCGTTTGTTTTGCGGAGTTCTCTCGTCATCT
GGCCGCCAAGCGGCACGAGCAGCAGTGCTCCGTCAGGGTGAGGCGTCTTT
TCGTCTGCCCCCACTGCCTGACGCTTTTCGGCGAGGAGGCCCGGCTGGAG
CGGCATCGGGAGCGAAAGCACAACGATGGCCAGTTCCTGTGCCTGCAGTG
CGGCAAGAAGTACGCGTCAGCCACGTTTCTTTACCGTCATGTTGCCAGTT
GGCACGGCCAGCAGTCGCTGTTCTACTGCGACATGTGCACGGACAACTGC
AACGACGTTAAGACCTTTAGCGGGATGCTGGAGCTGCAGGAGCACGCCGA
GGAGGTGCATCGCCTGCGTACCCTGAAGTCCACGGCCAGTGATGCAGACA
GCCAGGTTGATGAAATGGAGGATCTTGAGATGCTAGAGGAGAACATTGAG
AACATACTGCCCAGCATCGACTGGGACGACGATCTCACCTTTGGCTGGCC
CACCGACCTGGACAAGGAGTCGTGCATTGTGAACGCTAAGCCGAGCGTTT
TCGTGTGTCCCTTCTGCGCCAACGGATTCCCCGGCAGTCTGAGCCTGGTG
CGGCACCTGGAGCAGGTTCACGAACGCAGTGCCCTGGACTGCTGCTACTG
TGGCAAGAGCCATGGCAGCCGAGAAGCCCTGC
BO01080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-PA | 1059 | CG7101-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1454 | CG7101-RA | 73..838 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18830663..18831143 | 17..497 | 2405 | 100 | Plus |
| X | 23542271 | X | 18831218..18831507 | 493..782 | 1450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:48:09 has no hits.
BO01080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:46 Download gff for
BO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:44 Download gff for
BO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:58 Download gff for
BO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 73..838 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:43 Download gff for
BO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 73..838 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:43 Download gff for
BO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18830663..18831143 | 17..497 | 100 | -> | Plus |
| X | 18831223..18831507 | 498..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:58 Download gff for
BO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18724696..18725176 | 17..497 | 100 | -> | Plus |
| arm_X | 18725256..18725540 | 498..782 | 100 | | Plus |
BO01080.complete Sequence
1090 bp (1090 high quality bases) assembled on 2006-03-30
GenBank Submission: FJ629414
> BO01080.complete
GAAGTTATCAGTCGACATGGAACCGGTGCCCATCCGGCCAAAAGCGCCGG
GAGCGAGCAACCGCGGAGCCCTGCCGCTGGCGGCGAAGAAGCCGGCCAAG
AAGCGTACGTACCACTGCGGCGTTTGTTTTGCGGAGTTCTCTCGTCATCT
GGCCGCCAAGCGGCACGAGCAGCAGTGCTCCGTCAGGGTGAGGCGTCTTT
TCGTCTGCCCCCACTGCCTGACGCTTTTCGGCGAGGAGGCCCGGCTGGAG
CGGCATCGGGAGCGAAAGCACAACGATGGCCAGTTCCTGTGCCTGCAGTG
CGGCAAGAAGTACGCGTCAGCCACGTTTCTTTACCGTCATGTTGCCAGTT
GGCACGGCCAGCAGTCGCTGTTCTACTGCGACATGTGCACGGACAACTGC
AACGACGTTAAGACCTTTAGCGGGATGCTGGAGCTGCAGGAGCACGCCGA
GGAGGTGCATCGCCTGCGTACCCTGAAGTCCACGGCCAGTGATGCAGACA
GCCAGGTTGATGAAATGGAGGATCTTGAGATGCTAGAGGAGAACATTGAG
AACATACTGCCCAGCATCGACTGGGACGACGATCTCACCTTTGGCTGGCC
CACCGACCTGGACAAGGAGTCGTGCATTGTGAACGCTAAGCCGAGCGTTT
TCGTGTGTCCCTTCTGCGCCAACGGATTCCCCGGCAGTCTGAGCCTGGTG
CGGCACCTGGAGCAGGTTCACGAACGCAGTGCCCTGGACTGCTGCTACTG
TGGCAAGAGCCATGGCAGCCGAGAAGCCCTGCGGTCCCATCTGCAACGTG
TTCACATCCTCTTGCGCGGTCATGTGTGCGGTATTTGCCAGGCGGACTTC
GCCACTGCTGATCACCTAAAGAAGCACGTTAACAGTCTGCACCTGGACCA
CCGACCGCATCTGTGTCCCACGTGCGGAAAGAGATTCACCCAGCGGTGCC
ACCTCACCGATCACATAAAGACGGATCGCGGCCATGGACACGGCACTTAC
ACCTGTGAATTCTGCGTGCGGCCCTTCTTCCGGGCCATCGATCTCGAACG
GCATGTGTGTGAGGAACATCCGGCAAGCTTTCTAGACCAT
BO01080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1059 | CG7101-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-RA | 1454 | CG7101-RA | 73..1128 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18831218..18831797 | 493..1072 | 2900 | 100 | Plus |
| X | 23542271 | X | 18830663..18831143 | 17..497 | 2405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:36 has no hits.
BO01080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:18 Download gff for
BO01080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 1..1059 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:27 Download gff for
BO01080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 58..1113 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:08 Download gff for
BO01080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 73..1128 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:18 Download gff for
BO01080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 58..1113 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:49 Download gff for
BO01080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7101-RA | 73..1128 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:49 Download gff for
BO01080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18830663..18831143 | 17..497 | 100 | -> | Plus |
| X | 18831223..18831797 | 498..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:08 Download gff for
BO01080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18724696..18725176 | 17..497 | 100 | -> | Plus |
| arm_X | 18725256..18725830 | 498..1074 | 99 | | Plus |
BO01080.pep Sequence
Translation from 16 to 1090
> BO01080.pep
MEPVPIRPKAPGASNRGALPLAAKKPAKKRTYHCGVCFAEFSRHLAAKRH
EQQCSVRVRRLFVCPHCLTLFGEEARLERHRERKHNDGQFLCLQCGKKYA
SATFLYRHVASWHGQQSLFYCDMCTDNCNDVKTFSGMLELQEHAEEVHRL
RTLKSTASDADSQVDEMEDLEMLEENIENILPSIDWDDDLTFGWPTDLDK
ESCIVNAKPSVFVCPFCANGFPGSLSLVRHLEQVHERSALDCCYCGKSHG
SREALRSHLQRVHILLRGHVCGICQADFATADHLKKHVNSLHLDHRPHLC
PTCGKRFTQRCHLTDHIKTDRGHGHGTYTCEFCVRPFFRAIDLERHVCEE
HPASFLDH
BO01080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7101-PA | 352 | CG7101-PA | 1..352 | 1..352 | 1959 | 100 | Plus |
| crol-PG | 878 | CG14938-PG | 244..552 | 27..351 | 266 | 25 | Plus |
| crol-PF | 907 | CG14938-PF | 244..549 | 27..347 | 266 | 25.5 | Plus |
| crol-PD | 878 | CG14938-PD | 244..520 | 27..347 | 261 | 25.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 105..410 | 27..351 | 248 | 25.5 | Plus |
| crol-PF | 907 | CG14938-PF | 287..675 | 14..356 | 223 | 21.1 | Plus |
| crol-PG | 878 | CG14938-PG | 277..646 | 32..356 | 221 | 21.8 | Plus |
| crol-PD | 878 | CG14938-PD | 277..646 | 32..356 | 218 | 21.5 | Plus |
| crol-PG | 878 | CG14938-PG | 222..492 | 63..347 | 212 | 25.1 | Plus |
| crol-PD | 878 | CG14938-PD | 222..492 | 63..347 | 196 | 23.7 | Plus |
