Clone Sequence Records
BO01082.3prime Sequence
860 bp (858 high quality bases) assembled on 2005-11-30
> BO01082.3prime
ATGGTCTAGAAAGCTTGCTGACTGCTTCTTGAACTTCTTTAAAATGGGGA
ATATCTTGTCGAAGGCATCGTAGATCTCCTGCCGCACCTTTGCTCCAGTG
AGCACCACCTTTCCGGACACGAAGATGAGGAGCACGATTCGAGGTCGCAC
CATACGATAGATTAAGCCGGGAAATAGCTCAGGCTCGTAGCTGCTGAAGT
TGCAATGGGTCAGCACCAGGCCTTCCAAGCGTATGGGGAACTTGACATCG
CAGGAGCCGACCATGTTTTGAATCTTAAAGTCGAGGAACTTTGCAGGGAA
ACCGAGCTTTTGGATGATGCGCGCATACTTTCTCGCTGCCAGTCTGGAGT
CGTCCTCACTCTTTGCCCCTGTGCACACCATCTTGCCGGAGCTGAAAATA
AGGGCGGTGGTCCGGGGCTCTCGGATTCGCATAATCACAGCCGCAAATCG
CTTAGGATTGTACTCGGCGTTTCTCGCATGCAATGCTATTTTCTTGAGGT
CCAGTTTGCAGCACAGATTAACCGTGGACACGATGTTCTGAAGTTGTGGC
ACAATACCGGGATCAGCGGAACCTGGTGTGGCTGGTGTCATCGGCGTGGA
GGGGCCCATCGTCTGGTGGATGTTGCTCAGGGCATCTCCGCCACCTCCGG
CCCCCGAACCGCCCACACTCCGCTCACTCATGGGCATCATGTGGGCCATC
ATGCTCTGCGGCGTCTGCGGCTGCATCATGGACTGCGGAGTGCTCCCACC
GCCGCCGGGCGCCTGACTCTGGAGCTGCTGTTGCTGCTGCTGCTGCTGAT
AGGAGGCCGATGGCTGGTAACTCTGCATTTTGTTGTGCGCCAGCGGGAGC
GATGGTTCGT
BO01082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9874-PA | 1062 | Tbp-RA | 218..1059 | 860..19 | 4160 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1387 | CG9874-RA | 408..1249 | 860..19 | 4180 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21686669..21687235 | 294..860 | 2805 | 99.6 | Plus |
2R | 25286936 | 2R | 21686330..21686605 | 19..294 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:12:13 has no hits.
BO01082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:48 Download gff for
BO01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 218..1062 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:48 Download gff for
BO01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 218..1062 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:26 Download gff for
BO01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 408..1252 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:08:54 Download gff for
BO01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 408..1252 | 15..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:08:54 Download gff for
BO01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21686326..21686605 | 15..294 | 99 | <- | Plus |
2R | 21686670..21687235 | 295..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:26 Download gff for
BO01082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17573831..17574110 | 15..294 | 99 | <- | Plus |
arm_2R | 17574175..17574740 | 295..860 | 99 | | Plus |
BO01082.5prime Sequence
888 bp (811 high quality bases) assembled on 2005-11-30
> BO01082.5prime
GAAGTTATCAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTC
CGAGCATCGGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTG
GCCAATCCTGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGAT
GCCGGCACCCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGT
CGGACGCCAGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCG
CTGGCGCACAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCA
GCAGCAGCAGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGA
GCACTCCGCAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCC
CACATGATGCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGG
TGGCGGAGATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGC
CGATGACACCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAA
CTTCAGAACATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAA
GAAAATAGCATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTG
CGGCTGTGATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTC
AGCTCCGGCAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAG
ACTGGCAGCGAGAAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCTG
CAAAGTTCCTCGACTTTTAGATTCAAAACATGGTCGGCTCCTGCGATGTC
AAGTTCCCCATACGCTTGGGAGGCCTGGTGCTGACCCA
BO01082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9874-PA | 1062 | Tbp-RA | 1..872 | 17..888 | 4310 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1387 | CG9874-RA | 191..1062 | 17..888 | 4330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21686669..21687452 | 800..17 | 3920 | 100 | Minus |
2R | 25286936 | 2R | 21686517..21686605 | 888..800 | 415 | 97.8 | Minus |
Blast to na_te.dros performed 2015-02-13 16:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 175..324 | 133 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 176..329 | 129 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 175..325 | 127 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 175..325 | 126 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 294..336 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 175..204 | 114 | 86.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 175..198 | 111 | 95.8 | Plus |
BO01082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:49 Download gff for
BO01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:49 Download gff for
BO01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9874-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:28 Download gff for
BO01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 182..1061 | 7..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:36:08 Download gff for
BO01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 182..1061 | 7..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:36:08 Download gff for
BO01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21686518..21686605 | 800..887 | 97 | <- | Minus |
2R | 21686670..21687461 | 7..799 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:28 Download gff for
BO01082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17574023..17574110 | 800..887 | 97 | <- | Minus |
arm_2R | 17574175..17574966 | 7..799 | 99 | | Minus |
BO01082.complete Sequence
1093 bp (1093 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629415
> BO01082.complete
GAAGTTATCAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTC
CGAGCATCGGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTG
GCCAATCCTGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGAT
GCCGGCACCCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGT
CGGACGCCAGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCG
CTGGCGCACAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCA
GCAGCAGCAGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGA
GCACTCCGCAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCC
CACATGATGCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGG
TGGCGGAGATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGC
CGATGACACCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAA
CTTCAGAACATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAA
GAAAATAGCATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTG
CGGCTGTGATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTC
AGCTCCGGCAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAG
ACTGGCAGCGAGAAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCTG
CAAAGTTCCTCGACTTTAAGATTCAAAACATGGTCGGCTCCTGCGATGTC
AAGTTCCCCATACGCTTGGAAGGCCTGGTGCTGACCCATTGCAACTTCAG
CAGCTACGAGCCTGAGCTATTTCCCGGCTTAATCTATCGTATGGTGCGAC
CTCGAATCGTGCTCCTCATCTTCGTGTCCGGAAAGGTGGTGCTCACTGGA
GCAAAGGTGCGGCAGGAGATCTACGATGCCTTCGACAAGATATTCCCCAT
TTTAAAGAAGTTCAAGAAGCAGTCAGCAAGCTTTCTAGACCAT
BO01082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1062 | CG9874-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-RA | 1387 | CG9874-RA | 191..1249 | 17..1075 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21686669..21687452 | 800..17 | 3920 | 100 | Minus |
2R | 25286936 | 2R | 21686330..21686605 | 1075..800 | 1380 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:46:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 175..324 | 133 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 176..329 | 129 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 175..325 | 127 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 175..325 | 126 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 294..336 | 116 | 74.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 175..204 | 114 | 86.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 175..198 | 111 | 95.8 | Plus |
BO01082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:31 Download gff for
BO01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 1..1062 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:31 Download gff for
BO01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 180..1250 | 7..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:31 Download gff for
BO01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 191..1249 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:32 Download gff for
BO01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 180..1250 | 7..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:23 Download gff for
BO01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-RA | 191..1249 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:23 Download gff for
BO01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21686328..21686605 | 800..1077 | 99 | <- | Minus |
2R | 21686670..21687452 | 17..799 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:31 Download gff for
BO01082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17573833..17574110 | 800..1077 | 99 | <- | Minus |
arm_2R | 17574175..17574957 | 17..799 | 100 | | Minus |
BO01082.pep Sequence
Translation from 16 to 1093
> BO01082.pep
MDQMLSPNFSIPSIGTPLHQMEADQQIVANPVYHPPAVSQPDSLMPAPGS
SSVQHQQQQQQSDASGGSGLFGHEPSLPLAHKQMQSYQPSASYQQQQQQQ
QLQSQAPGGGGSTPQSMMQPQTPQSMMAHMMPMSERSVGGSGAGGGGDAL
SNIHQTMGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALH
ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARK
YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPE
LFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKFK
KQSASFLDH
BO01082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tbp-PA | 353 | CG9874-PA | 1..353 | 1..353 | 1828 | 100 | Plus |
Trf-PA | 224 | CG7562-PA | 22..223 | 148..351 | 586 | 55.9 | Plus |
Trf2-PJ | 632 | CG18009-PJ | 204..385 | 179..359 | 355 | 41.8 | Plus |
Trf2-PH | 632 | CG18009-PH | 204..385 | 179..359 | 355 | 41.8 | Plus |
Trf2-PI | 1714 | CG18009-PI | 1286..1467 | 179..359 | 355 | 41.8 | Plus |