Clone Sequence Records
BO01084.3prime Sequence
929 bp (756 high quality bases) assembled on 2005-11-30
> BO01084.3prime
ATGGTCTAGAAAGCTTGCTTTATATTGACTATGGTTTCTATAACTATGAT
AAGAACTCACTTCCTGGGCCTTCGACATGGCTGCGGAGACGACAATCGAG
TTAGCCATGCCACTGCTGCTATTGCTACCCGTGGGCGAGATCCCGGCCAG
CGACGGGGGCGGCGGAGTGGTGGGAATCGACGTAGAGGGGCCACCATTGT
TGCTGGGACTCTTGCGACTTTGTGGATTCGCCAGTGAAGCCAAAGCGGCC
GCCAACCGTGCTTGTATTTTCGGTTGGCGCGCGCGCAATTCTTCCAGACT
CAGGTCCTCCTGTGGATGCATAATCTTTGTGGTCACAGCAGCAGCGGAAG
TTCCGCTTGCCGCCGGTGGAGCTGGAGGTCGCTGCTGGTGTTGCTGAGCA
TCTGGCGGACCACTTGGTGGTGCGCTGGATGCGCCACCAGCATGATTGGT
GGTAGGCGGAGCACTTATGGTAGCATTACTGTACGCTGGAAATGTTGGCT
TTTGTTGAGCCATGGCGGCGGCGTGGTGATGATGGGCCGCCGCCGCAGCA
GCTGCCGCCGATGTTGTGGCCATGGCGGCTGGAAACAAAGGACGCGGAGG
CATCATGTGCGGCATCATGGGCACTGGATACGGAGGCAGTGGCGGCATGT
GCTGCATCATGCCCATGCCGTACTGCCCCAGCATGTGCGGTGGCATCATG
TTCGGGGGCATCATCATAGGCGGCGGTACACTCATGGCATATTCTACTTT
CTTTTTGGCCACCGGTTCATCATCGTCCGAATCAGACTTGCCACCATTCT
TCTGACGTTCGTGATCCCTGAGATCCTCGGCGGGAATGCCGTCCATGCCA
AAGATTTCGACTTTCAATATTGAGCGATTGGGCAGCGAGTGGGGGACCTT
GTCCACCCGTTTCCTGGTGCACCTGCATG
BO01084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-PA | 1074 | CG17912-RA | 227..1071 | 863..19 | 4225 | 100 | Minus |
CG17912-PA | 1074 | CG17912-RA | 183..220 | 907..870 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RA | 1612 | CG17912-RA | 287..1196 | 929..19 | 4455 | 99.5 | Minus |
CG17912-RD | 6091 | CG17912-RD | 287..1154 | 929..61 | 4245 | 99.4 | Minus |
CG17912-RC | 4400 | CG17912-RC | 287..1154 | 929..61 | 4245 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16744688..16745149 | 480..19 | 2310 | 100 | Minus |
2L | 23513712 | 2L | 16744124..16744385 | 740..479 | 1310 | 100 | Minus |
2L | 23513712 | 2L | 16743880..16744067 | 929..741 | 790 | 95.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:43:11 has no hits.
BO01084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:52 Download gff for
BO01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 162..1074 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:53 Download gff for
BO01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 162..1074 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:08 Download gff for
BO01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 287..1199 | 15..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:43:52 Download gff for
BO01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 287..1199 | 15..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:43:52 Download gff for
BO01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16743880..16744067 | 741..929 | 97 | -> | Minus |
2L | 16744124..16744385 | 479..740 | 100 | -> | Minus |
2L | 16744690..16745152 | 15..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:08 Download gff for
BO01084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16744124..16744385 | 479..740 | 100 | -> | Minus |
arm_2L | 16743880..16744067 | 741..929 | 97 | -> | Minus |
arm_2L | 16744690..16745152 | 15..478 | 99 | | Minus |
BO01084.5prime Sequence
838 bp (771 high quality bases) assembled on 2005-11-30
> BO01084.5prime
GAAGTTATCAGTCGACATGGGACGCAAGAAGAAGAAGGCCTCCAAACCCT
GGTGCTGGTACTGCAACCGTGAGTTCGATGACGAAAAGATCCTTGTGCAG
CACCAGAAGGCCAAGCACTTCAAATGCCACATCTGCCACAAGAAGTTGTA
CACCGGACCCGGACTATCCATACACTGCATGCAGGTGCACAAGGAAACGG
TGGACAAGGTCCCCAACTCGCTGCCCAATCGCTCAAATATTGAAGTCGAA
ATCTTTGGCATGGACGGCATTCCCGCCGAGGATCTCAGGGATCACGAACG
TCAGAAGAATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGCCA
AAAAGAAAGTAGAATATGCCATGAGTGTACCGCCGCCTATGATGATGCCC
CCGAACATGATGCCACCGCACATGCTGGGGCAGTACGGCATGGGCATGAT
GCAGCACATGCCGCCACTGCCTCCGTATCCAGTGCCCATGATGCCGCACA
TGATGCCTCCGCGTCCTTTGTTTCCAGCCGCCATGGCCACAACATCGGCG
GCAGCTGCTGCGGCGGCGGCCCATCATCACCACGCCGCCGCCATGGCTCA
ACAAAAGCCAACATTTCCAGCGTACAGTAATGCTACCATAAGTGCTCCGC
CTACCACCAATCATGCTGGTGGCGCATCCAGCGCACCACCAAGTGGTCCG
CCAGATGCTCAGCAACACCAGCAGCGACCTCCAGCTCCACCGGCGGCAAG
CGGAACTTCCGCTGCTGCTGTGACCCACAAGATTATGCATCCACAGGAGG
ACCTGAGTCTGGAAGAATTGCGCGCGCGCCAACCGAAA
BO01084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-PA | 1074 | CG17912-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG17912-PA | 1074 | CG17912-RA | 763..822 | 779..838 | 300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RD | 6091 | CG17912-RD | 125..947 | 16..838 | 4070 | 99.8 | Plus |
CG17912-RC | 4400 | CG17912-RC | 125..947 | 16..838 | 4070 | 99.8 | Plus |
CG17912-RG | 3709 | CG17912-RG | 125..947 | 16..838 | 4070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16743759..16744067 | 57..365 | 1545 | 100 | Plus |
2L | 23513712 | 2L | 16744124..16744385 | 366..627 | 1310 | 100 | Plus |
2L | 23513712 | 2L | 16744688..16744900 | 626..838 | 1020 | 98.6 | Plus |
2L | 23513712 | 2L | 16743529..16743573 | 16..60 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:09:33 has no hits.
BO01084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:52 Download gff for
BO01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:16:55 Download gff for
BO01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:15 Download gff for
BO01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RG | 120..944 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:29 Download gff for
BO01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RG | 120..944 | 10..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:29 Download gff for
BO01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16743524..16743570 | 10..57 | 93 | -> | Plus |
2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
2L | 16744690..16744897 | 628..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:15 Download gff for
BO01084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16743524..16743570 | 10..57 | 93 | -> | Plus |
arm_2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
arm_2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
arm_2L | 16744690..16744897 | 628..835 | 99 | | Plus |
BO01084.complete Sequence
1105 bp (1105 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629416
> BO01084.complete
GAAGTTATCAGTCGACATGGGACGCAAGAAGAAGAAGGCCTCCAAACCCT
GGTGCTGGTACTGCAACCGTGAGTTCGATGACGAAAAGATCCTTGTGCAG
CACCAGAAGGCCAAGCACTTCAAATGCCACATCTGCCACAAGAAGTTGTA
CACCGGACCCGGACTATCCATACACTGCATGCAGGTGCACAAGGAAACGG
TGGACAAGGTCCCCAACTCGCTGCCCAATCGCTCAAATATTGAAGTCGAA
ATCTTTGGCATGGACGGCATTCCCGCCGAGGATCTCAGGGATCACGAACG
TCAGAAGAATGGTGGCAAGTCTGATTCGGACGATGATGAACCGGTGGCCA
AAAAGAAAGTAGAATATGCCATGAGTGTACCGCCGCCTATGATGATGCCC
CCGAACATGATGCCACCGCACATGCTGGGGCAGTACGGCATGGGCATGAT
GCAGCACATGCCGCCACTGCCTCCGTATCCAGTGCCCATGATGCCGCACA
TGATGCCTCCGCGTCCTTTGTTTCCAGCCGCCATGGCCACAACATCGGCG
GCAGCTGCTGCGGCGGCGGCCCATCATCACCACGCCGCCGCCATGGCTCA
ACAAAAGCCAACATTTCCAGCGTACAGTAATGCTACCATAAGTGCTCCGC
CTACCACCAATCATGCTGGTGGCGCATCCAGCGCACCACCAAGTGGTCCG
CCAGATGCTCAGCAACACCAGCAGCGACCTCCAGCTCCACCGGCGGCAAG
CGGAACTTCCGCTGCTGCTGTGACCACAAAGATTATGCATCCACAGGAGG
ACCTGAGTCTGGAAGAATTGCGCGCGCGCCAACCGAAAATACAAGCACGG
TTGGCGGCCGCTTTGGCTTCACTGGCGAATCCACAAAGTCGCAAGAGTCC
CAGCAACAATGGTGGCCCCTCTACGTCGATTCCCACCACTCCGCCGCCCC
CGTCGCTGGCCGGGATCTCGCCCACGGGTAGCAATAGCAGCAGTGGCATG
GCTAACTCGATTGTCGTCTCCGCAGCCATGTCGAAGGCCCAGGAAGTGAG
TTCTTATCATAGTTATAGAAACCATAGTCAATATAAAGCAAGCTTTCTAG
ACCAT
BO01084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RA | 1074 | CG17912-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
CG17912-RD | 1689 | CG17912-PD | 1..1029 | 17..1045 | 5145 | 100 | Plus |
CG17912-RC | 1689 | CG17912-PC | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-RA | 1612 | CG17912-RA | 125..1196 | 16..1087 | 5360 | 100 | Plus |
CG17912-RD | 6091 | CG17912-RD | 125..1154 | 16..1045 | 5150 | 100 | Plus |
CG17912-RC | 4400 | CG17912-RC | 125..1154 | 16..1045 | 5150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16744688..16745149 | 626..1087 | 2310 | 100 | Plus |
2L | 23513712 | 2L | 16743759..16744067 | 57..365 | 1545 | 100 | Plus |
2L | 23513712 | 2L | 16744124..16744385 | 366..627 | 1310 | 100 | Plus |
2L | 23513712 | 2L | 16743529..16743573 | 16..60 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:43 has no hits.
BO01084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:16 Download gff for
BO01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 1..1074 | 17..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:13 Download gff for
BO01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 121..1200 | 10..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:54 Download gff for
BO01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 126..1196 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:16 Download gff for
BO01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 121..1200 | 10..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:36 Download gff for
BO01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17912-RA | 126..1196 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:36 Download gff for
BO01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
2L | 16744690..16745149 | 628..1089 | 99 | | Plus |
2L | 16743530..16743570 | 17..57 | 100 | -> | Plus |
2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:54 Download gff for
BO01084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16744124..16744385 | 366..627 | 100 | -> | Plus |
arm_2L | 16743530..16743570 | 17..57 | 100 | -> | Plus |
arm_2L | 16743760..16744067 | 58..365 | 100 | -> | Plus |
arm_2L | 16744690..16745149 | 628..1089 | 99 | | Plus |
BO01084.pep Sequence
Translation from 16 to 1105
> BO01084.pep
MGRKKKKASKPWCWYCNREFDDEKILVQHQKAKHFKCHICHKKLYTGPGL
SIHCMQVHKETVDKVPNSLPNRSNIEVEIFGMDGIPAEDLRDHERQKNGG
KSDSDDDEPVAKKKVEYAMSVPPPMMMPPNMMPPHMLGQYGMGMMQHMPP
LPPYPVPMMPHMMPPRPLFPAAMATTSAAAAAAAAHHHHAAAMAQQKPTF
PAYSNATISAPPTTNHAGGASSAPPSGPPDAQQHQQRPPAPPAASGTSAA
AVTTKIMHPQEDLSLEELRARQPKIQARLAAALASLANPQSRKSPSNNGG
PSTSIPTTPPPPSLAGISPTGSNSSSGMANSIVVSAAMSKAQEVSSYHSY
RNHSQYKASFLDH
BO01084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17912-PA | 357 | CG17912-PA | 1..357 | 1..357 | 1916 | 100 | Plus |
CG17912-PG | 476 | CG17912-PG | 1..343 | 1..343 | 1838 | 100 | Plus |
CG17912-PD | 562 | CG17912-PD | 1..343 | 1..343 | 1838 | 100 | Plus |
CG17912-PC | 562 | CG17912-PC | 1..343 | 1..343 | 1838 | 100 | Plus |
CG17912-PB | 562 | CG17912-PB | 1..343 | 1..343 | 1838 | 100 | Plus |