Clone Sequence Records
BO01087.3prime Sequence
761 bp (654 high quality bases) assembled on 2005-11-30
> BO01087.3prime
ATGGTCTAGAAAGCTTGCCCAACCAGTTGTGGTATTGGCCAGTCGTCGCA
TTCTGCGCGTGTTGCGGTCCTGGTCGCGGATTTTCTTCTCCATTTCGGCG
TCGGTAAGCGTCTCTAGGAATGGCGCCCATGCGTCAGCGTCGCTGGGATT
CCGGAAGGGCACATCAATCGTTGATAGAGGGGCCTCGCTGAAGGCGTACG
TTCGACAGTGCCACGATAGCTGACCCCTAATGCTGTAGGCAATGGCCGTA
ACAAACTCTCCTCCCAATCCCAATTCCGCACAGAGTTTAATGGCAAACTC
CTCGGGGTTGTTGTTCTTCTCGGACATGTCCCACTCGACCTGGTCGACGA
GCGAGGTGTTGCCCACGTGAATGTTCAGCTTAACAATGACCCGCTGGTCG
CAGGTCTCCTCGAGGATGGGGGGATCGTTGGGAAAGGCTTCGATCTGCTG
TCGGATGGCCTGTGCAATAGCCGGCACAAAGGGCAGGGGATTGAGGTCCA
GGTCGTCGCACAGCACCTCGGCAAACTGCTCCGGAGTAATCATGCTCTCG
TTCTTGTTCCACGTGAAGGTGTCGCGCAGCTTTTGACCCTCTAGCTCCAT
GTCCAGTCGAATGGGCACCAGGCACTCCTTCTGCGCCGCATTCTCCAGGC
TAGCCGTGGGATCCGTGTCGTCGAAACACATCGGGAATGTGCGAACCTTC
TTCGTGTGCACTCGGTTTCGGTTGATTGGCGTGGCCTGTGGCACTGCGTC
CAGNTGGCTGG
BO01087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1064-PA | 1113 | Snr1-RA | 368..1110 | 761..19 | 3696 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 501..1243 | 761..19 | 3704 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471920..5472662 | 761..19 | 3704 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:43:23 has no hits.
BO01087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:57 Download gff for
BO01087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-PA | 368..1113 | 16..761 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:01 Download gff for
BO01087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1064-PA | 368..1113 | 16..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:11 Download gff for
BO01087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 501..1250 | 11..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:18 Download gff for
BO01087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 501..1250 | 11..761 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:18 Download gff for
BO01087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471920..5472669 | 11..761 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:11 Download gff for
BO01087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1297642..1298391 | 11..761 | 99 | | Minus |
BO01087.5prime Sequence
649 bp (648 high quality bases) assembled on 2005-11-29
> BO01087.5prime
GAAGTTATCAGTCGACATGGCACTGCAGACATACGGGGACAAGCCGGTGG
CCTTCCAGCTGGAGGAGGGCGGCGAGTACTACTACGTGGGCTCGGAAGTG
GGCAACTACATGCGCCACTTCCGCGGCATTCTGTACAAGAAGTACCCGGG
AATGACCCGCATCGTCCTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGT
CCGGCCTCAGCTCCCACATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCC
GTAGAGGTGGATGATATCATGGCCGGCAACGATGAAAAGTATCGCGCCGT
CTCCGTGAACACTTCCGATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGA
AGCAGCCACAGTATGTGCCCACGATGCCGAACTCCAGCCACCTGGACGCA
GTGCCACAGGCCACGCCAATCAACCGAAACCGAGTGCACACGAAGAAGGT
TCGCACATTCCCGATGTGTTTCGACGACACGGATCCCACGGCTAGCCTGG
AGAATGCGGCGCAGAAGGAGTGCCTGGTGCCCATTCGACTGGACATGGAG
CTAGAGGGTCAAAAGCTGCGCGACACCTTCACGTGGAACAAGAACGAGAG
CATGATTACTCCGGAGCAGTTTGCCGAGGTGCTGTGCGACGACCTGGAC
BO01087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1064-PA | 1113 | Snr1-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 132..766 | 15..649 | 3175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472185 | 289..649 | 1805 | 100 | Plus |
| 3R | 32079331 | 3R | 5471057..5471333 | 15..291 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:17:08 has no hits.
BO01087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:22:58 Download gff for
BO01087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:02 Download gff for
BO01087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1064-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:33:05 Download gff for
BO01087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 124..766 | 6..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:53 Download gff for
BO01087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 124..766 | 6..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:53 Download gff for
BO01087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471049..5471330 | 6..288 | 98 | -> | Plus |
| 3R | 5471825..5472185 | 289..649 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:33:05 Download gff for
BO01087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296771..1297052 | 6..288 | 98 | -> | Plus |
| arm_3R | 1297547..1297907 | 289..649 | 100 | | Plus |
BO01087.complete Sequence
1144 bp (1144 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629417
> BO01087.complete
GAAGTTATCAGTCGACATGGCACTGCAGACATACGGGGACAAGCCGGTGG
CCTTCCAGCTGGAGGAGGGCGGCGAGTACTACTACGTGGGCTCGGAAGTG
GGCAACTACATGCGCCACTTCCGCGGCATTCTGTACAAGAAGTACCCGGG
AATGACCCGCATCGTCCTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGT
CCGGCCTCAGCTCCCACATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCC
GTAGAGGTGGATGATATCATGGCCGGCAACGATGAAAAGTATCGCGCCGT
CTCCGTGAACACTTCCGATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGA
AGCAGCCACAGTATGTGCCCACGATGCCGAACTCCAGCCACCTGGACGCA
GTGCCACAGGCCACGCCAATCAACCGAAACCGAGTGCACACGAAGAAGGT
TCGCACATTCCCGATGTGTTTCGACGACACGGATCCCACGGCTAGCCTGG
AGAATGCGGCGCAGAAGGAGTGCCTGGTGCCCATTCGACTGGACATGGAG
CTAGAGGGTCAAAAGCTGCGCGACACCTTCACGTGGAACAAGAACGAGAG
CATGATTACTCCGGAGCAGTTTGCCGAGGTGCTGTGCGACGACCTGGACC
TCAATCCCCTGCCCTTTGTGCCGGCTATTGCACAGGCCATCCGACAGCAG
ATCGAAGCCTTTCCCAACGATCCCCCCATCCTCGAGGAGACCTGCGACCA
GCGGGTCATTGTTAAGCTGAACATTCACGTGGGCAACACCTCGCTCGTCG
ACCAGGTCGAGTGGGACATGTCCGAGAAGAACAACAACCCCGAGGAGTTT
GCCATTAAACTCTGTGCGGAATTGGGATTGGGAGGAGAGTTTGTTACGGC
CATTGCCTACAGCATTAGGGGTCAGCTATCGTGGCACTGTCGAACGTACG
CCTTCAGCGAGGCCCCTCTATCAACGATTGATGTGCCCTTCCGGAATCCC
AGCGACGCTGACGCATGGGCGCCATTCCTAGAGACGCTTACCGACGCCGA
AATGGAGAAGAAAATCCGCGACCAGGACCGCAACACGCGCAGAATGCGAC
GACTGGCCAATACCACAACTGGTTGGGCAAGCTTTCTAGACCAT
BO01087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1113 | CG1064-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 132..1243 | 15..1126 | 5560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472662 | 289..1126 | 4190 | 100 | Plus |
| 3R | 32079331 | 3R | 5471057..5471333 | 15..291 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:30 has no hits.
BO01087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:17 Download gff for
BO01087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 1..1113 | 17..1129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:15 Download gff for
BO01087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 133..1259 | 6..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:28 Download gff for
BO01087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 134..1243 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:18 Download gff for
BO01087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 133..1259 | 6..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:13 Download gff for
BO01087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 134..1243 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:13 Download gff for
BO01087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471059..5471330 | 17..288 | 100 | -> | Plus |
| 3R | 5471825..5472662 | 289..1128 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:28 Download gff for
BO01087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296781..1297052 | 17..288 | 100 | -> | Plus |
| arm_3R | 1297547..1298384 | 289..1128 | 99 | | Plus |
BO01087.pep Sequence
Translation from 16 to 1144
> BO01087.pep
MALQTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIV
LSNEERKRLAESGLSSHILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTS
DTPVPRESKSKKQPQYVPTMPNSSHLDAVPQATPINRNRVHTKKVRTFPM
CFDDTDPTASLENAAQKECLVPIRLDMELEGQKLRDTFTWNKNESMITPE
QFAEVLCDDLDLNPLPFVPAIAQAIRQQIEAFPNDPPILEETCDQRVIVK
LNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLCAELGLGGEFVTAIAYSI
RGQLSWHCRTYAFSEAPLSTIDVPFRNPSDADAWAPFLETLTDAEMEKKI
RDQDRNTRRMRRLANTTTGWASFLDH
BO01087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-PA | 370 | CG1064-PA | 1..370 | 1..370 | 1942 | 100 | Plus |
