Clone Sequence Records
BO01090.3prime Sequence
750 bp (749 high quality bases) assembled on 2005-11-30
> BO01090.3prime
ATGGTCTAGAAAGCTTGCGGAGCACTGAACATCAAACAGCTCGCAAATAC
CTTCGTCGCTTTTTAACGCAAAGTTGAAGTCTTCCTGCGGAGGATTCAGC
TGCAGCAGCGGCGGGTTTTCTAGATTCGGATCATCGGGATAAAATCGCCG
CAGCGAATGACCGGACAGATAATTTTGGAAGATTATCTTGGCCGTCAGCT
CGTTCTCCAAAAGTTTCATCTCATCTTTCATCCCGGGATTGCACGAGTAA
CCGTGCTCGTCGGTGATCACGTTCCCCGCGCATGCTGGAGCGTTACCATC
CTCGCTGGAGTGCGACGACGTCGAGGGTGAGGGCGTGTCCAGACGGTGAT
AGTCAAAGAACCCATCCACATCGTGCGGATTTGTAGTACTCTTTCCTTGG
TTCGTCACCAGGCGAATGTCAATTGCGCTGCCATTGTCCAGCGACACGGC
CAGCTCGTAATGATTACGCTTGATATCTACTTCCTCGTCATAATTAGGTA
TTGTGAATACGGAATCATCTCCAAAGATGTCCAGCAGATCATCACGTGTC
ACATATGCATACGACCTATTCGAGGGATCCTGCATAACGTAGCGCAGATT
GCGCTGTGCATACTCCAGTTGCCTGTCTAGGTCATCCTCCAACATTTTCA
AATGATTAGTCCGGCTACGTGCCAGGTCGTAGTTCTCTTGGTCCTTGGCA
TTGTTAAAGCCCCCTCCGCGCCAGCGCACTAGGGAGCAGTGTCTGCCCTT
BO01090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1071-PA | 1113 | E2f2-RA | 379..1110 | 750..19 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E2f2-RB | 2002 | CG1071-RB | 1085..1816 | 750..19 | 3660 | 100 | Minus |
E2f2-RA | 1485 | CG1071-RA | 568..1299 | 750..19 | 3660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21154646..21154985 | 120..459 | 1700 | 100 | Plus |
2L | 23513712 | 2L | 21155107..21155366 | 460..719 | 1300 | 100 | Plus |
2L | 23513712 | 2L | 21154479..21154581 | 19..121 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:17:32 has no hits.
BO01090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:03 Download gff for
BO01090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-PA | 379..1113 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:08 Download gff for
BO01090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1071-PA | 379..1113 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:29 Download gff for
BO01090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 568..1304 | 12..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:44 Download gff for
BO01090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 568..1304 | 12..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:44 Download gff for
BO01090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21154474..21154579 | 12..119 | 97 | <- | Plus |
2L | 21154646..21154985 | 120..459 | 100 | <- | Plus |
2L | 21155107..21155365 | 460..718 | 100 | <- | Plus |
2L | 21155572..21155603 | 719..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:29 Download gff for
BO01090.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21155572..21155603 | 719..750 | 100 | | Plus |
arm_2L | 21154474..21154579 | 12..119 | 97 | <- | Plus |
arm_2L | 21154646..21154985 | 120..459 | 100 | <- | Plus |
arm_2L | 21155107..21155365 | 460..718 | 100 | <- | Plus |
BO01090.5prime Sequence
861 bp (760 high quality bases) assembled on 2005-11-29
> BO01090.5prime
GAAGTTATCAGTCGACATGTACAAGCGCAAAACCGCGAGTATTGTTAAAA
GAGACAGCTCCGCAGCGGGCACCACCTCCTCGGCTATGATGATGAAGGTG
GATTCGGCTGAGACTTCGGTCCGGTCGCAGAGCTACGAGTCTACACCCGT
TAGCATGGACACATCACCGGATCCTCCAACGCCAATCAAGTCTCCGTCGA
ATTCACAATCGCAATCGCAGCCTGGACAACAGCGCTCCGTGGGCTCACTG
GTCCTGCTCACACAGAAGTTTGTGGATCTCGTGAAGGCCAACGAAGGATC
CATCGACCTGAAAGCGGCAACCAAAATCTTGGACGTACAGAAGCGCCGAA
TATACGATATTACCAATGTTTTAGAGGGCATTGGACTAATTGATAAGGGC
AGACACTGCTCCCTAGTGCGCTGGCGCGGAGGGGGCTTTAACAATGCCAA
GGACCAAGAGAACTACGACCTGGCACGTAGCCGGACTAATCATTTGAAAA
TGTTGGAGGATGACCTAGACAGGCAACTGGAGTATGCACAGCGCAATCTG
CGCTACGTTATGCAGGATCCCTCGAATAGGTCGTATGCATATGTGACACG
TGATGATCTGCTGGACATCTTTGGAGATGATTCCGTATTCACAATACCTA
ATTATGACGAGGAAGTAGATATCAAGCGTAATCATTACGAGCTGGCCGTG
TCGCTGGACAATGGCAGCGCAATTGACATTCGCCTGGTGACGAAACCAAG
GAAGAGTACTACAAATCCGCACGATGTGGATGGGTTCTTTGACTATCACC
GTCTGGACACGCCCTCACCCTCGACGTCGTCGCACTCCAGCGAGGATGGT
AACGCTCCAGC
BO01090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1071-PA | 1113 | E2f2-RA | 1..728 | 17..744 | 3640 | 100 | Plus |
CG1071-PA | 1113 | E2f2-RA | 736..845 | 752..861 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E2f2-RB | 2002 | CG1071-RB | 706..1551 | 16..861 | 4185 | 99.8 | Plus |
E2f2-RA | 1485 | CG1071-RA | 189..1034 | 16..861 | 4185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21155743..21156044 | 317..16 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 21155107..21155366 | 685..426 | 1300 | 100 | Minus |
2L | 23513712 | 2L | 21154810..21154985 | 861..686 | 820 | 97.7 | Minus |
2L | 23513712 | 2L | 21155572..21155682 | 426..316 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:59:50 has no hits.
BO01090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:04 Download gff for
BO01090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:10 Download gff for
BO01090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1071-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:23 Download gff for
BO01090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 189..1034 | 16..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:25 Download gff for
BO01090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 189..1034 | 16..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:25 Download gff for
BO01090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21154810..21154985 | 686..861 | 98 | <- | Minus |
2L | 21155107..21155365 | 427..685 | 100 | <- | Minus |
2L | 21155572..21155681 | 317..426 | 100 | <- | Minus |
2L | 21155744..21156044 | 16..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:23 Download gff for
BO01090.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21154810..21154985 | 686..861 | 98 | <- | Minus |
arm_2L | 21155107..21155365 | 427..685 | 100 | <- | Minus |
arm_2L | 21155572..21155681 | 317..426 | 100 | <- | Minus |
arm_2L | 21155744..21156044 | 16..316 | 100 | | Minus |
BO01090.complete Sequence
1144 bp (1144 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629418
> BO01090.complete
GAAGTTATCAGTCGACATGTACAAGCGCAAAACCGCGAGTATTGTTAAAA
GAGACAGCTCCGCAGCGGGCACCACCTCCTCGGCTATGATGATGAAGGTG
GATTCGGCTGAGACTTCGGTCCGGTCGCAGAGCTACGAGTCTACACCCGT
TAGCATGGACACATCACCGGATCCTCCAACGCCAATCAAGTCTCCGTCGA
ATTCACAATCGCAATCGCAGCCTGGACAACAGCGCTCCGTGGGCTCACTG
GTCCTGCTCACACAGAAGTTTGTGGATCTCGTGAAGGCCAACGAAGGATC
CATCGACCTGAAAGCGGCAACCAAAATCTTGGACGTACAGAAGCGCCGAA
TATACGATATTACCAATGTTTTAGAGGGCATTGGACTAATTGATAAGGGC
AGACACTGCTCCCTAGTGCGCTGGCGCGGAGGGGGCTTTAACAATGCCAA
GGACCAAGAGAACTACGACCTGGCACGTAGCCGGACTAATCATTTGAAAA
TGTTGGAGGATGACCTAGACAGGCAACTGGAGTATGCACAGCGCAATCTG
CGCTACGTTATGCAGGATCCCTCGAATAGGTCGTATGCATATGTGACACG
TGATGATCTGCTGGACATCTTTGGAGATGATTCCGTATTCACAATACCTA
ATTATGACGAGGAAGTAGATATCAAGCGTAATCATTACGAGCTGGCCGTG
TCGCTGGACAATGGCAGCGCAATTGACATTCGCCTGGTGACGAACCAAGG
AAAGAGTACTACAAATCCGCACGATGTGGATGGGTTCTTTGACTATCACC
GTCTGGACACGCCCTCACCCTCGACGTCGTCGCACTCCAGCGAGGATGGT
AACGCTCCAGCATGCGCGGGGAACGTGATCACCGACGAGCACGGTTACTC
GTGCAATCCCGGGATGAAAGATGAGATGAAACTTTTGGAGAACGAGCTGA
CGGCCAAGATAATCTTCCAAAATTATCTGTCCGGTCATTCGCTGCGGCGA
TTTTATCCCGATGATCCGAATCTAGAAAACCCGCCGCTGCTGCAGCTGAA
TCCTCCGCAGGAAGACTTCAACTTTGCGTTAAAAAGCGACGAAGGTATTT
GCGAGCTGTTTGATGTTCAGTGCTCCGCAAGCTTTCTAGACCAT
BO01090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E2f2-RB | 1113 | CG1071-PB | 1..1110 | 17..1126 | 5550 | 100 | Plus |
E2f2-RA | 1113 | CG1071-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E2f2-RB | 2002 | CG1071-RB | 706..1816 | 16..1126 | 5555 | 100 | Plus |
E2f2-RA | 1485 | CG1071-RA | 189..1299 | 16..1126 | 5555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21154646..21154985 | 1025..686 | 1700 | 100 | Minus |
2L | 23513712 | 2L | 21155743..21156044 | 317..16 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 21155107..21155366 | 685..426 | 1300 | 100 | Minus |
2L | 23513712 | 2L | 21155572..21155682 | 426..316 | 555 | 100 | Minus |
2L | 23513712 | 2L | 21154479..21154581 | 1126..1024 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:32 has no hits.
BO01090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:18 Download gff for
BO01090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 1..1113 | 17..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:16 Download gff for
BO01090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 202..1317 | 16..1133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:02 Download gff for
BO01090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 190..1299 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:19 Download gff for
BO01090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 202..1317 | 16..1133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:46 Download gff for
BO01090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E2f2-RA | 190..1299 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:46 Download gff for
BO01090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21154477..21154579 | 1026..1128 | 98 | <- | Minus |
2L | 21154646..21154985 | 686..1025 | 100 | <- | Minus |
2L | 21155107..21155365 | 427..685 | 100 | <- | Minus |
2L | 21155572..21155681 | 317..426 | 100 | <- | Minus |
2L | 21155744..21156043 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:02 Download gff for
BO01090.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21154477..21154579 | 1026..1128 | 98 | <- | Minus |
arm_2L | 21154646..21154985 | 686..1025 | 100 | <- | Minus |
arm_2L | 21155107..21155365 | 427..685 | 100 | <- | Minus |
arm_2L | 21155572..21155681 | 317..426 | 100 | <- | Minus |
arm_2L | 21155744..21156043 | 17..316 | 100 | | Minus |
BO01090.pep Sequence
Translation from 16 to 1144
> BO01090.pep
MYKRKTASIVKRDSSAAGTTSSAMMMKVDSAETSVRSQSYESTPVSMDTS
PDPPTPIKSPSNSQSQSQPGQQRSVGSLVLLTQKFVDLVKANEGSIDLKA
ATKILDVQKRRIYDITNVLEGIGLIDKGRHCSLVRWRGGGFNNAKDQENY
DLARSRTNHLKMLEDDLDRQLEYAQRNLRYVMQDPSNRSYAYVTRDDLLD
IFGDDSVFTIPNYDEEVDIKRNHYELAVSLDNGSAIDIRLVTNQGKSTTN
PHDVDGFFDYHRLDTPSPSTSSHSSEDGNAPACAGNVITDEHGYSCNPGM
KDEMKLLENELTAKIIFQNYLSGHSLRRFYPDDPNLENPPLLQLNPPQED
FNFALKSDEGICELFDVQCSASFLDH
BO01090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E2f2-PB | 370 | CG1071-PB | 1..370 | 1..370 | 1931 | 100 | Plus |
E2f2-PA | 370 | CG1071-PA | 1..370 | 1..370 | 1931 | 100 | Plus |
E2f1-PF | 805 | CG6376-PF | 229..425 | 44..240 | 222 | 34.3 | Plus |
E2f1-PA | 805 | CG6376-PA | 229..425 | 44..240 | 222 | 34.3 | Plus |
E2f1-PC | 805 | CG6376-PC | 229..425 | 44..240 | 222 | 34.3 | Plus |