Clone Sequence Records
BO01092.3prime Sequence
888 bp (786 high quality bases) assembled on 2005-11-30
> BO01092.3prime
ATGGTCTAGAAAGCTTGCAGATCCACTTTTTCCTAGTAAAGCCTCATCCT
TAGCCCCTGTCTGCATGCCGTTACTGGCCTTCACGTCCAGTTCCACAGGA
TTGTCCAGTGCCGCCTGGGCGCTTGAAGTGTGGGCGTGACCTTTTGAGCG
ATAGTGGGAGGTCAGGTGGGAGCGGCGAACGAAGGAGACTTGGCAGGAGT
CGCAGTGGAACGCTCGCACTCCGGTGTGACTCAGCATGTGCGTGCGGAGT
TTTCCGCTCATGGCAAAGCTTTTATTGCATTCCTTGCACGTGAAGGGCTT
GACATTCGTGTGGCGCATGCGTTCGTGCTGGATGCGTCCGCTGGCGTTGC
TGTAGGTTGCCTCGCAGTAGCGACACTGAAACAAAGCATTCCCCGCATGC
AGTTCTTGGTGGCGCCGCAGAAGCGTAGCAGTGTAGAACTGCTGGGAGCA
CTGGTCACAGGCAAAGCTCTTTACGCCGGTGTGTCGGAGGAGGTGCAACT
TGAAGTTGCTGGGGCAGGTGAAGTGCCGGCCACACTGCTCGCATATGCAA
TCCCGCTTGCGTCGCTCCCGCTTTAGGGCCACCACTTCGTCCTCGGTGAG
TCTGCTCCACTGGGTGCGCGTGGCCTGGCTATTGTCCGCAAACTTAACGG
AGGTAAAGACTGTGGGCGTGGTCTTTGTACTTCTGCGGAGCTTCTTCTCC
TGCGCAGGAACCTTCACTTGGGGCTGCTCGTTCTGCTCACATATTTCGTA
CGGCTCTTCCGTCTCTTCCAGCAGGTGTTCCTCGGGTAGAAGGTCTATAA
CCTCGATCTCGGTGACCTCTTCAGCGTACTGAATCTCCTTCTCCACACCA
ACTGCGAAGGAATCGATCAATTTCCGCGTTCCCCAGGT
BO01092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-PA | 1119 | CG1792-RA | 263..1116 | 872..19 | 4245 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1344 | CG1792-RA | 347..1215 | 888..19 | 4310 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31616702..31617273 | 888..316 | 2800 | 99.7 | Minus |
3R | 32079331 | 3R | 31617522..31617708 | 205..19 | 935 | 100 | Minus |
3R | 32079331 | 3R | 31617349..31617459 | 316..206 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:17:28 has no hits.
BO01092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:07 Download gff for
BO01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 248..1119 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:14 Download gff for
BO01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 248..1119 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:33:07 Download gff for
BO01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 347..1215 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:04 Download gff for
BO01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 347..1215 | 19..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:04 Download gff for
BO01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31616702..31617272 | 317..888 | 99 | -> | Minus |
3R | 31617349..31617459 | 206..316 | 100 | -> | Minus |
3R | 31617522..31617708 | 19..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:33:07 Download gff for
BO01092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27442424..27442994 | 317..888 | 99 | -> | Minus |
arm_3R | 27443071..27443181 | 206..316 | 100 | -> | Minus |
arm_3R | 27443244..27443430 | 19..205 | 100 | | Minus |
BO01092.5prime Sequence
844 bp (763 high quality bases) assembled on 2005-11-30
> BO01092.5prime
GAAGTTATCAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGT
TCATTTTCTGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTA
ATGCTGCACCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACC
CGGGAACGAGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGC
AGACGGCGATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTG
CAGGAAAGTCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGT
TGGTGTGGAGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGG
TTATAGACCTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCG
TACGAAATATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCA
GGAGAAGAAGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCT
CCGTTAAGTTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGA
CTCACCGAGGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGA
TTGCATATGCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCA
AGTTGCACCTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAG
TGCTCCCAGCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACT
GCATGCGGGGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGCAACCTACA
GCAACGCCAGCGGACGCATCCAGCACGAACGCATGCGCCACACG
BO01092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-PA | 1119 | CG1792-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1344 | CG1792-RA | 100..927 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31616575..31617273 | 137..835 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 31616402..31616521 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:17:31 has no hits.
BO01092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:08 Download gff for
BO01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:16 Download gff for
BO01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:33:09 Download gff for
BO01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..927 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:17 Download gff for
BO01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..927 | 17..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:17 Download gff for
BO01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31616402..31616521 | 17..136 | 100 | -> | Plus |
3R | 31616575..31617281 | 137..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:33:09 Download gff for
BO01092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27442124..27442243 | 17..136 | 100 | -> | Plus |
arm_3R | 27442297..27443003 | 137..844 | 99 | | Plus |
BO01092.complete Sequence
1150 bp (1150 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629419
> BO01092.complete
GAAGTTATCAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGT
TCATTTTCTGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTA
ATGCTGCACCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACC
CGGGAACGAGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGC
AGACGGCGATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTG
CAGGAAAGTCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGT
TGGTGTGGAGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGG
TTATAGACCTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCG
TACGAAATATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCA
GGAGAAGAAGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCT
CCGTTAAGTTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGA
CTCACCGAGGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGA
TTGCATATGCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCA
AGTTGCACCTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAG
TGCTCCCAGCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACT
GCATGCGGGGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGCAACCTACA
GCAACGCCAGCGGACGCATCCAGCACGAACGCATGCGCCACACGAATGTC
AAGCCCTTCACGTGCAAGGAATGCAATAAAAGCTTTGCCATGAGCGGAAA
ACTCCGCACGCACATGCTGAGTCACACCGGAGTGCGAGCGTTCCACTGCG
ACTCCTGCCAAGTCTCCTTCGTTCGCCGCTCCCACCTGACCTCCCACTAT
CGCTCAAAAGGTCACGCCCACACTTCAAGCGCCCAGGCGGCACTGGACAA
TCCTGTGGAACTGGACGTGAAGGCCAGTAACGGCATGCAGACAGGGGCTA
AGGATGAGGCTTTACTAGGAAAAAGTGGATCTGCAAGCTTTCTAGACCAT
BO01092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1119 | CG1792-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-RA | 1344 | CG1792-RA | 100..1215 | 17..1132 | 5580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31616575..31617273 | 137..835 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 31617522..31617708 | 946..1132 | 935 | 100 | Plus |
3R | 32079331 | 3R | 31616402..31616521 | 17..136 | 600 | 100 | Plus |
3R | 32079331 | 3R | 31617349..31617459 | 835..945 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:07 has no hits.
BO01092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:20 Download gff for
BO01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 1..1119 | 17..1133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:18 Download gff for
BO01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 63..1178 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:35 Download gff for
BO01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..1215 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:20 Download gff for
BO01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 63..1178 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:09 Download gff for
BO01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1792-RA | 100..1215 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:09 Download gff for
BO01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31616402..31616521 | 17..136 | 100 | -> | Plus |
3R | 31616575..31617272 | 137..834 | 100 | -> | Plus |
3R | 31617349..31617459 | 835..945 | 100 | -> | Plus |
3R | 31617522..31617708 | 946..1134 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:35 Download gff for
BO01092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27443244..27443430 | 946..1134 | 98 | | Plus |
arm_3R | 27442124..27442243 | 17..136 | 100 | -> | Plus |
arm_3R | 27442297..27442994 | 137..834 | 100 | -> | Plus |
arm_3R | 27443071..27443181 | 835..945 | 100 | -> | Plus |
BO01092.pep Sequence
Translation from 16 to 1150
> BO01092.pep
MPNRNCRTCGLFIFCSTPSNLFEEPNSVMLHQIEVLTGLFLLGGPGNELP
PFICSPCELDLQTAIAFRERVIRTQKTLQESPNLGNAELIESFAVGVEKE
IQYAEEVTEIEVIDLLPEEHLLEETEEPYEICEQNEQPQVKVPAQEKKLR
RSTKTTPTVFTSVKFADNSQATRTQWSRLTEDEVVALKRERRKRDCICEQ
CGRHFTCPSNFKLHLLRHTGVKSFACDQCSQQFYTATLLRRHQELHAGNA
LFQCRYCEATYSNASGRIQHERMRHTNVKPFTCKECNKSFAMSGKLRTHM
LSHTGVRAFHCDSCQVSFVRRSHLTSHYRSKGHAHTSSAQAALDNPVELD
VKASNGMQTGAKDEALLGKSGSASFLDH
BO01092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1792-PA | 372 | CG1792-PA | 1..372 | 1..372 | 1974 | 100 | Plus |
ranshi-PA | 346 | CG9793-PA | 1..346 | 1..346 | 485 | 34.7 | Plus |
CG8159-PB | 399 | CG8159-PB | 6..349 | 6..354 | 476 | 34.2 | Plus |
CG18764-PA | 409 | CG18764-PA | 159..395 | 90..333 | 476 | 39.1 | Plus |
CG11762-PA | 312 | CG11762-PA | 1..310 | 1..340 | 421 | 29.5 | Plus |
CG18764-PA | 409 | CG18764-PA | 5..340 | 6..334 | 203 | 26.2 | Plus |