Clone Sequence Records
BO01096.3prime Sequence
927 bp (752 high quality bases) assembled on 2005-11-30
> BO01096.3prime
ATGGTCTAGAAAGCTTGCGATTCGATGGATGCGCAGGTCGAGCGGTGACT
CCACGTCCATCTTAACGAAGAAGTCCTCGCTGTGGAGATAGCTATGCTGT
CTATCGCCTAGCCAATAGCTGGGCGAGAATTCCGCATCCTGTTTGGGTTT
TAGCGAGTAATCGCTGGGCTCATTGTTGGAGTCATCGTAGTAGCGGGCGG
ATGAGGAGGAGCTGGTGGACTCCACACTGCTGGCAGCGGGAAGACACGTG
AACGCTGATTCGCTGCTGGCCTCCAGGAGACAGGGTACGCTGGGCAGAGT
GAGCGGCTGGCTGGCGATCAGGTGGATGCTGTGCTTGAAGGTCTTGACGT
GCTTTCGCAGCGAGGACGGATCCGTGTAGCGCTTCTGGCAGCCGGCCACT
TTGCACATGTACGGCTTCTCCATCGAATGGGTGCGCGTGTGCTTGAAACG
ATCCGAGGAGTTCGAGTACGCCTTCTGGCAGCCCTCGAAGCTGCACTTGT
AGGGTTTCTCGCCCGAGTGTGACCTAATGTGGATCTTCAGGTTCTCCGCC
CGCGAGAAGGACTTCTCGCACAGGTGACAGCGATGTGGCTTCTCCTTCGT
GTGGGTGCGGGTATGGACAAGCATCTTGTAGCGGGCATTGAATCCTCGCT
CGCTGCGCTGACATCCCCGCCAGCGGCAATAGTAGAGTCCGTCTGTCAGG
CTGGCGATCGCATGTCGCTGGGTCACGTGCTGTGCCAGTGCATCCAAGGT
GTCGAAAACTCTATCGCAATCTGTCCAGTTGCATACGAAATCGCTGGCGG
TGCCGCACTCGCTGCTGCTGCTGCAGGACTTGCTGTCGTCGGGGAACTCC
ACTGGACTGCGGCAGAGCTCGTCCTGCTGGCCACGAGCCTTCATGATCAC
GGACTGGGTGCGCTGACGATATCCGTA
BO01096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3850-PA | 1155 | sug-RA | 244..1152 | 927..19 | 4545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RB | 1468 | CG3850-RB | 441..1349 | 927..19 | 4545 | 100 | Minus |
sug-RA | 1343 | CG3850-RA | 316..1224 | 927..19 | 4545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12929782..12930525 | 762..19 | 3720 | 100 | Minus |
2R | 25286936 | 2R | 12929175..12929341 | 927..761 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:09:44 has no hits.
BO01096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:12 Download gff for
BO01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-PA | 245..1155 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:22 Download gff for
BO01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3850-PA | 245..1155 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:20 Download gff for
BO01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 317..1230 | 12..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:49 Download gff for
BO01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 317..1230 | 12..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:49 Download gff for
BO01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12929176..12929341 | 761..926 | 100 | -> | Minus |
2R | 12929784..12930531 | 12..760 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:20 Download gff for
BO01096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8816681..8816846 | 761..926 | 100 | -> | Minus |
arm_2R | 8817289..8818036 | 12..760 | 99 | | Minus |
BO01096.5prime Sequence
871 bp (860 high quality bases) assembled on 2005-11-30
> BO01096.5prime
GAAGTTATCAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCG
GCCCACACAGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCG
TATAACACACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTT
GGCGGATCACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGC
AGATGCAGCACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCC
ATCGCCGGATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGC
TCGTGGCCAGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACG
ACAGCAAGTCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTC
GTATGCAACTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACT
GGCACAGCACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGAC
TCTACTATTGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAAT
GCCCGCTACAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCC
ACATCGCTGTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGA
AGATCCACATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTC
GAGGGCTGCCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACAC
GCGCACCCATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCC
AGAAGCGCTACACGGATCCGTCCTCGCTGCGAAAGCACGTCAGGACCTTC
AAGCACAGCATCCACCTGATC
BO01096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3850-PA | 1155 | sug-RA | 1..855 | 17..871 | 4250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RA | 1343 | CG3850-RA | 71..927 | 15..871 | 4270 | 99.9 | Plus |
sug-RB | 1468 | CG3850-RB | 228..1052 | 47..871 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12929782..12930228 | 425..871 | 2220 | 99.8 | Plus |
2R | 25286936 | 2R | 12928930..12929341 | 15..426 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:09:51 has no hits.
BO01096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:13 Download gff for
BO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:23 Download gff for
BO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3850-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:21 Download gff for
BO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 65..927 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:03 Download gff for
BO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 65..927 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:03 Download gff for
BO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12928924..12929341 | 9..426 | 99 | -> | Plus |
2R | 12929784..12930228 | 427..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:21 Download gff for
BO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8816429..8816846 | 9..426 | 99 | -> | Plus |
arm_2R | 8817289..8817733 | 427..871 | 99 | | Plus |
BO01096.complete Sequence
1186 bp (1186 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629420
> BO01096.complete
GAAGTTATCAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCG
GCCCACACAGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCG
TATAACACACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTT
GGCGGATCACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGC
AGATGCAGCACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCC
ATCGCCGGATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGC
TCGTGGCCAGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACG
ACAGCAAGTCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTC
GTATGCAACTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACT
GGCACAGCACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGAC
TCTACTATTGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAAT
GCCCGCTACAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCC
ACATCGCTGTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGA
AGATCCACATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTC
GAGGGCTGCCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACAC
GCGCACCCATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCC
AGAAGCGCTACACGGATCCGTCCTCGCTGCGAAAGCACGTCAAGACCTTC
AAGCACAGCATCCACCTGATCGCCAGCCAGCCGCTCACTCTGCCCAGCGT
ACCCTGTCTCCTGGAGGCCAGCAGCGAATCAGCGTTCACGTGTCTTCCCG
CTGCCAGCAGTGTGGAGTCCACCAGCTCCTCCTCATCCGCCCGCTACTAC
GATGACTCCAACAATGAGCCCAGCGATTACTCGCTAAAACCCAAACAGGA
TGCGGAATTCTCGCCCAGCTATTGGCTAGGCGATAGACAGCATAGCTATC
TCCACAGCGAGGACTTCTTCGTTAAGATGGACGTGGAGTCACCGCTCGAC
CTGCGCATCCATCGAATCGCAAGCTTTCTAGACCAT
BO01096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RA | 1155 | CG3850-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
sug-RB | 969 | CG3850-PB | 1..966 | 203..1168 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-RA | 1343 | CG3850-RA | 71..1224 | 15..1168 | 5770 | 100 | Plus |
sug-RB | 1468 | CG3850-RB | 228..1349 | 47..1168 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12929782..12930525 | 425..1168 | 3720 | 100 | Plus |
2R | 25286936 | 2R | 12928930..12929341 | 15..426 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:45:47 has no hits.
BO01096.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:21 Download gff for
BO01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 1..1155 | 17..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:20 Download gff for
BO01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 62..1227 | 9..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:05 Download gff for
BO01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 73..1224 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:21 Download gff for
BO01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 62..1227 | 9..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:28 Download gff for
BO01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sug-RA | 73..1224 | 17..1170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:28 Download gff for
BO01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12928932..12929341 | 17..426 | 100 | -> | Plus |
2R | 12929784..12930525 | 427..1170 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:05 Download gff for
BO01096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8816437..8816846 | 17..426 | 100 | -> | Plus |
arm_2R | 8817289..8818030 | 427..1170 | 99 | | Plus |
BO01096.pep Sequence
Translation from 16 to 1186
> BO01096.pep
MDIIQKSIFNSGPHSRGIYEPPLGYFTPYNTPPYIAAYSDSGSWLADHHQ
HHQQQHQQHQQQMQHIRFPTPPITPPRPIAGYGYRQRTQSVIMKARGQQD
ELCRSPVEFPDDSKSCSSSSECGTASDFVCNWTDCDRVFDTLDALAQHVT
QRHAIASLTDGLYYCRWRGCQRSERGFNARYKMLVHTRTHTKEKPHRCHL
CEKSFSRAENLKIHIRSHSGEKPYKCSFEGCQKAYSNSSDRFKHTRTHSM
EKPYMCKVAGCQKRYTDPSSLRKHVKTFKHSIHLIASQPLTLPSVPCLLE
ASSESAFTCLPAASSVESTSSSSSARYYDDSNNEPSDYSLKPKQDAEFSP
SYWLGDRQHSYLHSEDFFVKMDVESPLDLRIHRIASFLDH
BO01096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sug-PA | 384 | CG3850-PA | 1..384 | 1..384 | 2105 | 100 | Plus |
sug-PB | 322 | CG3850-PB | 1..322 | 63..384 | 1751 | 100 | Plus |
ci-PB | 1279 | CG2125-PB | 291..483 | 93..277 | 465 | 46.7 | Plus |
ci-PA | 1397 | CG2125-PA | 409..601 | 93..277 | 465 | 46.7 | Plus |
lmd-PB | 866 | CG4677-PB | 333..584 | 53..276 | 463 | 39.5 | Plus |