Clone Sequence Records
BO01102.3prime Sequence
854 bp (807 high quality bases) assembled on 2005-11-30
> BO01102.3prime
ATGGTCTAGAAAGCTTGCCGTGAGAAACATATCCGGAAAATCGCTGTGCA
GCAGGTCGAATGGATACCCATCCAGAGCGGAGAACGAACTAATACAGGCC
GACGGCTGCTGATCGCTGGCAAAGTCGAAGGAATCCTTGGAACTCTGGTC
CAGTAATCGCAGACTGAGCTCCACATCCGACTTCTCCAGACCCGACATGG
GCAGATCACCTCGGCAACCGGGCAACAGGGATTCCCCGCTGCCAGTGAGT
AGACTTCCATAGCCGGGACTTAGACAGGAGAGGGAATCCCCATCGGAGGT
ATCCAGAAGCAGAGAGTCCAGGGCGCTGATTCCGTTCAATCCCACCAGAC
TGTCCAGCTCCAGTCCCGGACTGCTACTGCTGCTGTGGCTGTTCGATGAC
GAGGAGAGCGATGCGTAGGCGGAGGAGGCAGGCGATCCAATCGAAGAGGT
GGCGTAGCACGACTCACCGGAACTTATCGGTGGTATCTGGGGCACTATCT
TGGCCTGCTTTTGGCTCTGTCTTTTGCTCGCGGCGGAACTCTTCTTACCA
CTGCCCTTTGTCTTGGCTGGCTTCTTGGCAACTGGAACGGGTAGCTCCAC
CTCGGCTTCCTCGTTCGCTTCCAAGTCCACTCTCGCCTCCCGATTGGCAC
TCTCCTCCAGACACTCCCCTATAAATTCGCTTTCATAGCTGGGATCTCGA
ATCGAGTCGGTCAGCATGGTGATGTACTTCATGGCCAGTCTCAGGGTGGT
GATTTTGGTCAGCTTCTCGTTGGTATTGGCCGCATCCTCGCCCTTGATCG
CTTCGGGAAACACATGCCTCAGTGTCTCAAAGGCCGTGTTGATCTCACGC
ATTC
BO01102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5441-PA | 1155 | dei-RA | 362..1152 | 809..19 | 3955 | 100 | Minus |
| CG5441-PA | 1155 | dei-RA | 317..357 | 854..814 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tx-RB | 2411 | CG5441-RB | 1276..2111 | 854..19 | 4135 | 99.8 | Minus |
| tx-RA | 1652 | CG5441-RA | 517..1352 | 854..19 | 4135 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26447856..26448691 | 854..19 | 4120 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:17:41 has no hits.
BO01102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:16 Download gff for
BO01102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dei-PA | 317..1155 | 16..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:29 Download gff for
BO01102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5441-PA | 317..1155 | 16..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:31 Download gff for
BO01102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 858..1699 | 13..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:27 Download gff for
BO01102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 517..1358 | 13..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:27 Download gff for
BO01102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26447856..26448697 | 13..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:31 Download gff for
BO01102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22273578..22274419 | 13..854 | 99 | | Minus |
BO01102.5prime Sequence
900 bp (794 high quality bases) assembled on 2005-11-30
> BO01102.5prime
GAAGTTATCAGTCGACATGAAGTCCAATACGTACGAACTGCACAACTACG
CCGATCTGAATGACATGGCCAGAGCGACGGACTCCAAGGATTCGCGCAAA
AGGAAGACGGCCAGTGCTCGGGGCGAGAAGTATTCCCTGCGACAGAAGCG
ACAAAAGAGGGGCTCCAACGAGGATGGGGAGTCAGCCAACCTGGCTGACT
TTCAACTAGAATTAGATCCCATAGCGGAGCCGGCTAGTAAATCGAGGAAA
AATGCACCCACCAAGTCCAAGACGAAAGCACCGCCACTGAGTAAATACCG
TCGGAAAACAGCGAATGCCAGGGAGCGAACCAGAATGCGTGAGATCAACA
CGGCCTTTGAGACACTGAGGCATTGTGTTCCCGAAGCGATCAAGGGCGAG
GATGCGGCCAATACCAACGAGAAGCTGACCAAAATCACCACCCTGAGACT
GGCCATGAAGTACATCACCATGCTGACCGACTCGATTCGAGATCCCAGCT
ATGAAAGCGAATTTATAGGGGAGTGTCTGGAGGAGAGTGCCAATCGGGAG
GCGAGAGTGGACTTGGAAGCGAACGAGGAAGCCGAGGTGGAGCTACCCGT
TCCAGTTGCCAAGAAGCCAGCCAAGACAAAGGGCAGTGGTAAGAAGAGTT
CCGCCGCGAGCAAAAGACAGAGCCAAAAGCAGGCCAAGATAGTGCCCCAG
ATACCACCGATAAGTTCCGGTGAGTCGTGCTACGCCACCTCTTCGATTGG
ATCGCCTGCCTCCTCCGCCTACGCATCGCTCTCCTCGTCATCGAACAGCC
ACAGCAGCAGTAGCAGTCCGGGACTGGAGCTGGACAGTCTGGTGGGATTG
AAACGAATCAGCGCCCTGGACTCTCTGCTTCTGGATACCTCCGATGGGGA
BO01102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5441-PA | 1155 | dei-RA | 1..884 | 17..900 | 4370 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tx-RB | 2411 | CG5441-RB | 960..1843 | 17..900 | 4390 | 99.8 | Plus |
| tx-RA | 1652 | CG5441-RA | 201..1084 | 17..900 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26447540..26448423 | 17..900 | 4390 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:12:23 has no hits.
BO01102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:17 Download gff for
BO01102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dei-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:30 Download gff for
BO01102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5441-PA | 1..883 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:27 Download gff for
BO01102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 542..1424 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:08:55 Download gff for
BO01102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 201..1083 | 17..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:08:55 Download gff for
BO01102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26447536..26448422 | 12..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:27 Download gff for
BO01102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22273258..22274144 | 12..899 | 99 | | Plus |
BO01102.complete Sequence
1186 bp (1186 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629421
> BO01102.complete
GAAGTTATCAGTCGACATGAAGTCCAATACGTACGAACTGCACAACTACG
CCGATCTGAATGACATGGCCAGAGCGACGGACTCCAAGGATTCGCGCAAA
AGGAAGACGGCCAGTGCTCGGGGCGAGAAGTATTCCCTGCGACAGAAGCG
ACAAAAGAGGGGCTCCAACGAGGATGGGGAGTCAGCCAACCTGGCTGACT
TTCAACTAGAATTAGATCCCATAGCGGAGCCGGCTAGTAAATCGAGGAAA
AATGCACCCACCAAGTCCAAGACGAAAGCACCGCCACTGAGTAAATACCG
TCGGAAAACAGCGAATGCCAGGGAGCGAACCAGAATGCGTGAGATCAACA
CGGCCTTTGAGACACTGAGGCATTGTGTTCCCGAAGCGATCAAGGGCGAG
GATGCGGCCAATACCAACGAGAAGCTGACCAAAATCACCACCCTGAGACT
GGCCATGAAGTACATCACCATGCTGACCGACTCGATTCGAGATCCCAGCT
ATGAAAGCGAATTTATAGGGGAGTGTCTGGAGGAGAGTGCCAATCGGGAG
GCGAGAGTGGACTTGGAAGCGAACGAGGAAGCCGAGGTGGAGCTACCCGT
TCCAGTTGCCAAGAAGCCAGCCAAGACAAAGGGCAGTGGTAAGAAGAGTT
CCGCCGCGAGCAAAAGACAGAGCCAAAAGCAGGCCAAGATAGTGCCCCAG
ATACCACCGATAAGTTCCGGTGAGTCGTGCTACGCCACCTCTTCGATTGG
ATCGCCTGCCTCCTCCGCCTACGCATCGCTCTCCTCGTCATCGAACAGCC
ACAGCAGCAGTAGCAGTCCGGGACTGGAGCTGGACAGTCTGGTGGGATTG
AACGGAATCAGCGCCCTGGACTCTCTGCTTCTGGATACCTCCGATGGGGA
TTCCCTCTCCTGTCTAAGTCCCGGCTATGGAAGTCTACTCACTGGCAGCG
GGGAATCCCTGTTGCCCGGTTGCCGAGGTGATCTGCCCATGTCGGGTCTG
GAGAAGTCGGATGTGGAGCTCAGTCTGCGATTACTGGACCAGAGTTCCAA
GGATTCCTTCGACTTTGCCAGCGATCAGCAGCCGTCGGCCTGTATTAGTT
CGTTCTCCGCTCTGGATGGGTATCCATTCGACCTGCTGCACAGCGATTTT
CCGGATATGTTTCTCACGGCAAGCTTTCTAGACCAT
BO01102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tx-RB | 1155 | CG5441-PB | 1..1152 | 17..1168 | 5760 | 100 | Plus |
| tx-RA | 1155 | CG5441-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tx-RB | 2411 | CG5441-RB | 960..2111 | 17..1168 | 5760 | 100 | Plus |
| tx-RA | 1652 | CG5441-RA | 201..1352 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26447540..26448691 | 17..1168 | 5760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:16:46 has no hits.
BO01102.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:22 Download gff for
BO01102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dei-RA | 1..1155 | 17..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:21 Download gff for
BO01102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dei-RA | 411..1568 | 17..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:41 Download gff for
BO01102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 542..1693 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:22 Download gff for
BO01102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dei-RA | 411..1568 | 17..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:32 Download gff for
BO01102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tx-RA | 201..1352 | 17..1170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:32 Download gff for
BO01102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26447540..26448691 | 17..1170 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:41 Download gff for
BO01102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22273262..22274413 | 17..1170 | 99 | | Plus |
BO01102.pep Sequence
Translation from 16 to 1186
> BO01102.pep
MKSNTYELHNYADLNDMARATDSKDSRKRKTASARGEKYSLRQKRQKRGS
NEDGESANLADFQLELDPIAEPASKSRKNAPTKSKTKAPPLSKYRRKTAN
ARERTRMREINTAFETLRHCVPEAIKGEDAANTNEKLTKITTLRLAMKYI
TMLTDSIRDPSYESEFIGECLEESANREARVDLEANEEAEVELPVPVAKK
PAKTKGSGKKSSAASKRQSQKQAKIVPQIPPISSGESCYATSSIGSPASS
AYASLSSSSNSHSSSSSPGLELDSLVGLNGISALDSLLLDTSDGDSLSCL
SPGYGSLLTGSGESLLPGCRGDLPMSGLEKSDVELSLRLLDQSSKDSFDF
ASDQQPSACISSFSALDGYPFDLLHSDFPDMFLTASFLDH
BO01102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tx-PB | 384 | CG5441-PB | 1..384 | 1..384 | 1931 | 100 | Plus |
| tx-PA | 384 | CG5441-PA | 1..384 | 1..384 | 1931 | 100 | Plus |
| cato-PA | 189 | CG7760-PA | 56..165 | 63..163 | 152 | 37.6 | Plus |
