Clone Sequence Records
BO01104.3prime Sequence
862 bp (772 high quality bases) assembled on 2005-11-30
> BO01104.3prime
ATGGTCTAGAAAGCTTGCTGGCAGCTCGTAGGCACGTTTCTTAAGGCTCA
GCAATTTGTTGGCATGGCGACGTAGATTCTCTTGGTTGGGATTGCGCAGG
ACTTCAGCCGCCGCCTCCTTAATCATGCCCTCGATGCTCTGCAGCAGCCA
TTCCTTATTGGGGCACGTAATAGCCAGACGGTAATCGCCATCCGGTGTCC
GCGACACGTTCCACTCTGCGGCGGAGTCGTCGCAGTCTCGGCTATCATTG
CTCTCCGTGTCCTCCGTCTTTATAGCAATGCACCGACGCACCTTGGACGG
CTCATCTTCTTCGGCGGCTTCCGGCACGGACTTGCGCTTCTTGCTATTGA
GCTGGCGTTCGTCTTGGATGCGATCCCGCTTGGGGCACGTACATATTTTA
ACATGTATAACATGCTGTCCCACGATATCGCCGCATGCTTTCTCCAGGCA
GAAGACTAAGGAAGTTTCTTTTCGCCCGATACACGAGTTTTGGCAGACGA
ACTTGAAGGCCAGGGTCTGGCGCGTGAGCCCACTGCGGGTTACAGACCGG
CTCATGTTCAGGGGGACTACAACGGAAAAACGCTCGGAAATTCCCTTGCC
CTGAGCATTTCCACAATATACACTGTTGGGATTCTCGCTGCGCAGCAAGC
TCTCGCGCATTTTTGCGTTATTGGCCGTCAAAGGCTCAACGCTAAGGTGA
TTTTGACAGCGGACCACGGGAGCACTCACATCATTGGAGAAGCAAAGGAA
CACACGCAAATTAAGTGGTTGGATGGGCATTTTAGACTTGAACTGAACGT
CCACGTTGAAGGCCTTGTTTCATCGGATGTAGAGCTTGTTCAGCGGAATC
GAGTACATCCAA
BO01104.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33336-PA | 1158 | p53-RA | 355..1155 | 819..19 | 4005 | 100 | Minus |
CG33336-PB | 1488 | p53-RB | 685..1485 | 819..19 | 4005 | 100 | Minus |
CG33336-PA | 1158 | p53-RA | 312..350 | 862..824 | 195 | 100 | Minus |
CG33336-PB | 1488 | p53-RB | 642..680 | 862..824 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RE | 1324 | CG33336-RE | 170..1013 | 862..19 | 4175 | 99.8 | Minus |
p53-RC | 2095 | CG33336-RC | 941..1784 | 862..19 | 4175 | 99.8 | Minus |
p53-RB | 1870 | CG33336-RB | 716..1559 | 862..19 | 4175 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050047..23050442 | 39..434 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 23050504..23050750 | 434..680 | 1235 | 100 | Plus |
3R | 32079331 | 3R | 23050815..23050996 | 681..862 | 850 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:42:07 has no hits.
BO01104.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:21 Download gff for
BO01104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-PB | 644..1488 | 16..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:35 Download gff for
BO01104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33336-PB | 644..1488 | 16..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:31:51 Download gff for
BO01104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 718..1565 | 11..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:56 Download gff for
BO01104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RB | 718..1565 | 11..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:56 Download gff for
BO01104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050504..23050750 | 434..680 | 100 | <- | Plus |
3R | 23050815..23050994 | 681..860 | 98 | | Plus |
3R | 23050047..23050441 | 39..433 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:31:51 Download gff for
BO01104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18875769..18876163 | 39..433 | 100 | <- | Plus |
arm_3R | 18876226..18876472 | 434..680 | 100 | <- | Plus |
arm_3R | 18876537..18876716 | 681..860 | 98 | | Plus |
BO01104.5prime Sequence
847 bp (810 high quality bases) assembled on 2005-11-30
> BO01104.5prime
GAAGTTATCAGTCGACATGTATATATCACAGCCAATGTCGTGGCACAAAG
AAAGCACTGATTCCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGAT
ATTCCGAAAACGGTGGAGGTATCGGGATCGGAATTGACCACGGAACCCAT
GGCCTTCTTGCAGGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGC
AATCCGTGCTGCGCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAAC
ACGCTGCCCAAGCTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCAT
GGTTCTGGATGAGCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGA
ACAAGCTCTACATCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTC
AAGTCTAAAATGCCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTT
CTCCAATGATGTGAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCG
TTGAGCCTTTGACGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGC
AGCGAGAATCCCAACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAAT
TTCCGAGCGTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAA
CCCGCAGTGGGCTCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAA
AACTCGTGTATCGGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAA
AGCATGCGGCGATATCGTGGGACAGCATGTTATACATGTTAAAATATGTA
CGTGCCCCCAGCGGGGATCGCATCAAGACGAACGCCAGCTCAATAGC
BO01104.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33336-PA | 1158 | p53-RA | 1..799 | 17..815 | 3970 | 99.8 | Plus |
CG33336-PB | 1488 | p53-RB | 368..1129 | 54..815 | 3785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RC | 2095 | CG33336-RC | 630..1460 | 17..847 | 4095 | 99.6 | Plus |
p53-RA | 1577 | CG33336-RA | 112..942 | 17..847 | 4095 | 99.6 | Plus |
p53-RB | 1870 | CG33336-RB | 442..1235 | 54..847 | 3910 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050815..23051127 | 509..197 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23050504..23050750 | 756..510 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 23053118..23053201 | 136..53 | 420 | 100 | Minus |
3R | 32079331 | 3R | 23050351..23050442 | 847..756 | 350 | 96.8 | Minus |
3R | 32079331 | 3R | 23053357..23053394 | 54..17 | 190 | 100 | Minus |
3R | 32079331 | 3R | 23053012..23053048 | 172..136 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:29:16 has no hits.
BO01104.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:22 Download gff for
BO01104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:36 Download gff for
BO01104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33336-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:01 Download gff for
BO01104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..942 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:18 Download gff for
BO01104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..942 | 17..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:05:18 Download gff for
BO01104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23050351..23050441 | 757..847 | 96 | <- | Minus |
3R | 23050504..23050750 | 510..756 | 100 | <- | Minus |
3R | 23050815..23051124 | 200..509 | 100 | <- | Minus |
3R | 23052922..23052948 | 173..199 | 100 | <- | Minus |
3R | 23053012..23053048 | 136..172 | 100 | <- | Minus |
3R | 23053119..23053199 | 55..135 | 100 | <- | Minus |
3R | 23053357..23053394 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:01 Download gff for
BO01104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18876073..18876163 | 757..847 | 96 | <- | Minus |
arm_3R | 18876226..18876472 | 510..756 | 100 | <- | Minus |
arm_3R | 18876537..18876846 | 200..509 | 100 | <- | Minus |
arm_3R | 18878644..18878670 | 173..199 | 100 | <- | Minus |
arm_3R | 18878734..18878770 | 136..172 | 100 | <- | Minus |
arm_3R | 18878841..18878921 | 55..135 | 100 | <- | Minus |
arm_3R | 18879079..18879116 | 17..54 | 100 | | Minus |
BO01104.complete Sequence
1189 bp (1189 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629422
> BO01104.complete
GAAGTTATCAGTCGACATGTATATATCACAGCCAATGTCGTGGCACAAAG
AAAGCACTGATTCCGAGGATGACTCCACGGAGGTCGATATCAAGGAGGAT
ATTCCGAAAACGGTGGAGGTATCGGGATCGGAATTGACCACGGAACCCAT
GGCCTTCTTGCAGGGATTAAACTCCGGGAATCTGATGCAGTTCAGCCAGC
AATCCGTGCTGCGCGAAATGATGCTGCAGGACATTCAGATCCAGGCGAAC
ACGCTGCCCAAGCTAGAGAATCACAACATCGGTGGTTATTGCTTCAGCAT
GGTTCTGGATGAGCCGCCCAAGTCTCTTTGGATGTACTCGATTCCGCTGA
ACAAGCTCTACATCCGGATGAACAAGGCCTTCAACGTGGACGTTCAGTTC
AAGTCTAAAATGCCCATCCAACCACTTAATTTGCGTGTGTTCCTTTGCTT
CTCCAATGATGTGAGTGCTCCCGTGGTCCGCTGTCAAAATCACCTTAGCG
TTGAGCCTTTGACGGCCAATAACGCAAAAATGCGCGAGAGCTTGCTGCGC
AGCGAGAATCCCAACAGTGTATATTGTGGAAATGCTCAGGGCAAGGGAAT
TTCCGAGCGTTTTTCCGTTGTAGTCCCCCTGAACATGAGCCGGTCTGTAA
CCCGCAGTGGGCTCACGCGCCAGACCCTGGCCTTCAAGTTCGTCTGCCAA
AACTCGTGTATCGGGCGAAAAGAAACTTCCTTAGTCTTCTGCCTGGAGAA
AGCATGCGGCGATATCGTGGGACAGCATGTTATACATGTTAAAATATGTA
CGTGCCCCAAGCGGGATCGCATCCAAGACGAACGCCAGCTCAATAGCAAG
AAGCGCAAGTCCGTGCCGGAAGCCGCCGAAGAAGATGAGCCGTCCAAGGT
GCGTCGGTGCATTGCTATAAAGACGGAGGACACGGAGAGCAATGATAGCC
GAGACTGCGACGACTCCGCCGCAGAGTGGAACGTGTCGCGGACACCGGAT
GGCGATTACCGTCTGGCTATTACGTGCCCCAATAAGGAATGGCTGCTGCA
GAGCATCGAGGGCATGATTAAGGAGGCGGCGGCTGAAGTCCTGCGCAATC
CCAACCAAGAGAATCTACGTCGCCATGCCAACAAATTGCTGAGCCTTAAG
AAACGTGCCTACGAGCTGCCAGCAAGCTTTCTAGACCAT
BO01104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RC | 1158 | CG33336-PC | 1..1155 | 17..1171 | 5775 | 100 | Plus |
p53-RA | 1158 | CG33336-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
p53-RB | 1488 | CG33336-PB | 368..1485 | 54..1171 | 5590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-RC | 2095 | CG33336-RC | 630..1784 | 17..1171 | 5775 | 100 | Plus |
p53-RA | 1577 | CG33336-RA | 112..1266 | 17..1171 | 5775 | 100 | Plus |
p53-RB | 1870 | CG33336-RB | 442..1559 | 54..1171 | 5590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23050047..23050442 | 1151..756 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 23050815..23051127 | 509..197 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 23050504..23050750 | 756..510 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 23053118..23053201 | 136..53 | 420 | 100 | Minus |
3R | 32079331 | 3R | 23053357..23053394 | 54..17 | 190 | 100 | Minus |
3R | 32079331 | 3R | 23053012..23053048 | 172..136 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:09 has no hits.
BO01104.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:09 Download gff for
BO01104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 1..1158 | 17..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:03 Download gff for
BO01104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 96..1256 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:23 Download gff for
BO01104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..1266 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:09 Download gff for
BO01104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 96..1256 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:33 Download gff for
BO01104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p53-RA | 112..1266 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:33 Download gff for
BO01104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23053119..23053199 | 55..135 | 100 | <- | Minus |
3R | 23053357..23053394 | 17..54 | 100 | | Minus |
3R | 23050815..23051124 | 200..509 | 100 | <- | Minus |
3R | 23052922..23052948 | 173..199 | 100 | <- | Minus |
3R | 23053012..23053048 | 136..172 | 100 | <- | Minus |
3R | 23050504..23050750 | 510..756 | 100 | <- | Minus |
3R | 23049964..23049987 | 1152..1173 | 91 | <- | Minus |
3R | 23050047..23050441 | 757..1151 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:23 Download gff for
BO01104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18875686..18875709 | 1152..1173 | 91 | <- | Minus |
arm_3R | 18875769..18876163 | 757..1151 | 100 | <- | Minus |
arm_3R | 18876226..18876472 | 510..756 | 100 | <- | Minus |
arm_3R | 18876537..18876846 | 200..509 | 100 | <- | Minus |
arm_3R | 18878644..18878670 | 173..199 | 100 | <- | Minus |
arm_3R | 18878734..18878770 | 136..172 | 100 | <- | Minus |
arm_3R | 18878841..18878921 | 55..135 | 100 | <- | Minus |
arm_3R | 18879079..18879116 | 17..54 | 100 | | Minus |
BO01104.pep Sequence
Translation from 16 to 1189
> BO01104.pep
MYISQPMSWHKESTDSEDDSTEVDIKEDIPKTVEVSGSELTTEPMAFLQG
LNSGNLMQFSQQSVLREMMLQDIQIQANTLPKLENHNIGGYCFSMVLDEP
PKSLWMYSIPLNKLYIRMNKAFNVDVQFKSKMPIQPLNLRVFLCFSNDVS
APVVRCQNHLSVEPLTANNAKMRESLLRSENPNSVYCGNAQGKGISERFS
VVVPLNMSRSVTRSGLTRQTLAFKFVCQNSCIGRKETSLVFCLEKACGDI
VGQHVIHVKICTCPKRDRIQDERQLNSKKRKSVPEAAEEDEPSKVRRCIA
IKTEDTESNDSRDCDDSAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGM
IKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELPASFLDH
BO01104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p53-PC | 385 | CG33336-PC | 1..385 | 1..385 | 2008 | 100 | Plus |
p53-PA | 385 | CG33336-PA | 1..385 | 1..385 | 2008 | 100 | Plus |
p53-PB | 495 | CG33336-PB | 122..495 | 12..385 | 1935 | 99.5 | Plus |
p53-PE | 334 | CG33336-PE | 10..334 | 61..385 | 1695 | 99.7 | Plus |