Clone Sequence Records
BO01108.3prime Sequence
866 bp (729 high quality bases) assembled on 2005-11-30
> BO01108.3prime
ATGGTCTAGAAAGCTTGCGTGAGCTTGAATTCGGATCTCGTTCCCGCCCC
CCTGCTCGGCCACCATTTCCACCTTCATGCTCTCGGCCAGCATTACGGCG
TTCTGGTGCAGTTTGGTCTCCTCGTGCTGGCGCATGTGATGCAGCAGACG
GAAGTCCTTGTTGCAATAATCGCAGCGGTACAGTTTGATGTCCGAGTGGA
TGAGCTCGTGCTTGGTCAGGGAGTGAGCGTAGGCAAACGCTTTGTCGCAC
ACCTTGCACACGTAGGGCTTGATGCCACGGTGAACATTTTCATGAGACTT
GAGAACACTTTCGTAGAAGAATTGACGACTGCAGAAGCTGCACTTATAGG
GTTTGCTGCCCGTGTGGGAGTACATGTGCTTCCTCAGTTGCTCGCGCACC
TGGAACTTGGCATCGCATAGTTCGCATGCATATTGGCAGATGCCGTCATG
GCGTCTGCGATGCTCCATCATCCGGCCGCGCTTTTCGTAAAAGTTTCCGC
AGACGTCGCAGATATAGCCACCCTTCTCAGTGCCGTCCGATGTTGTTAGG
GAGTTTAATCCGCGACGAACCCGGCCGCGCCGCGCCTTCAGGCTTGCCTT
GGCCGCCTCCTGCAGCGCCAACTGCTGCGATGGTGTCTCTTCGTACTGCT
TCTCAGACTCCAGGACGATCTCGGTCTGATCGGAGTTCATCTCGATGGTG
TAGTTGTCCTCCAAGTACTCGATGGTGTCGCCAATGCACTCCTGCTGATC
GCTGGTGTCCACTTCCAAGTACTCCTCGTGCCCCTTTTCTTCCTGGTGCT
CCTCTTCCCCGGTGGGTGGTCTCCTCCAGGATGTACATCTCCTCGTCGCA
TTGCTGCTGCGAAGCG
BO01108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10267-PA | 1167 | CG10267-RA | 368..1164 | 815..19 | 3985 | 100 | Minus |
CG10267-PA | 1167 | CG10267-RA | 322..369 | 862..815 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1455 | CG10267-RC | 461..1303 | 862..19 | 4195 | 99.9 | Minus |
Zif-RB | 1394 | CG10267-RB | 400..1242 | 862..19 | 4195 | 99.9 | Minus |
Zif-RA | 1463 | CG10267-RA | 469..1311 | 862..19 | 4195 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6457670..6458109 | 862..422 | 2155 | 99.8 | Minus |
3R | 32079331 | 3R | 6458403..6458670 | 286..19 | 1340 | 100 | Minus |
3R | 32079331 | 3R | 6458167..6458301 | 421..287 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:01:13 has no hits.
BO01108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:25 Download gff for
BO01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 318..1167 | 16..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:40 Download gff for
BO01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 318..1167 | 16..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:30 Download gff for
BO01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 465..1317 | 13..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:31 Download gff for
BO01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 465..1317 | 13..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:31 Download gff for
BO01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6457666..6458109 | 422..866 | 99 | -> | Minus |
3R | 6458167..6458301 | 287..421 | 100 | -> | Minus |
3R | 6458403..6458676 | 13..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:30 Download gff for
BO01108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2283889..2284023 | 287..421 | 100 | -> | Minus |
arm_3R | 2283388..2283831 | 422..866 | 99 | -> | Minus |
arm_3R | 2284125..2284398 | 13..286 | 98 | | Minus |
BO01108.5prime Sequence
806 bp (773 high quality bases) assembled on 2005-11-30
> BO01108.5prime
GAAGTTATCAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGG
TCTGCCTGGCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAG
GAAGGCGAGGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTC
ATACAGCAATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGT
CCTGCAAGGTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTG
CGCAAGCAGATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGA
CGAATCAGATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAAT
GCGACGAGGAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAG
CACCAGGAAGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGA
TCAGCAGGAGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACA
CCATCGAGATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAG
CAGTACGAAGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAA
GGCAAGCCTGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCC
TAACAACATCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGC
GGAAACTTTTACGAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCA
TGACGGCATCTGCCAATATGCATGCGAACTATGCGATGCCAAGTTCCAGG
TGCGCG
BO01108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10267-PA | 1167 | CG10267-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1455 | CG10267-RC | 140..929 | 17..806 | 3950 | 100 | Plus |
Zif-RB | 1394 | CG10267-RB | 79..868 | 17..806 | 3950 | 100 | Plus |
Zif-RA | 1463 | CG10267-RA | 148..937 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6457493..6458109 | 161..777 | 3085 | 100 | Plus |
3R | 32079331 | 3R | 6457287..6457430 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:55:14 has no hits.
BO01108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:26 Download gff for
BO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:42 Download gff for
BO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:16 Download gff for
BO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 144..937 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:50 Download gff for
BO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 144..937 | 9..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:50 Download gff for
BO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6457283..6457430 | 9..160 | 97 | -> | Plus |
3R | 6457493..6458109 | 161..777 | 100 | -> | Plus |
3R | 6458167..6458195 | 778..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:16 Download gff for
BO01108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2283005..2283152 | 9..160 | 97 | -> | Plus |
arm_3R | 2283215..2283831 | 161..777 | 100 | -> | Plus |
arm_3R | 2283889..2283917 | 778..806 | 100 | | Plus |
BO01108.complete Sequence
1198 bp (1198 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629423
> BO01108.complete
GAAGTTATCAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGG
TCTGCCTGGCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAG
GAAGGCGAGGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTC
ATACAGCAATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGT
CCTGCAAGGTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTG
CGCAAGCAGATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGA
CGAATCAGATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAAT
GCGACGAGGAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAG
CACCAGGAAGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGA
TCAGCAGGAGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACA
CCATCGAGATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAG
CAGTACGAAGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAA
GGCAAGCCTGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCC
TAACAACATCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGC
GGAAACTTTTACGAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCA
TGACGGCATCTGCCAATATGCATGCGAACTATGCGATGCCAAGTTCCAGG
TGCGCGAGCAACTGAGGAAGCACATGTACTCCCACACGGGCAGCAAACCC
TATAAGTGCAGCTTCTGCAGTCGTCAATTCTTCTACGAAAGTGTTCTCAA
GTCTCATGAAAATGTTCACCGTGGCATCAAGCCCTACGTGTGCAAGGTGT
GCGACAAAGCGTTTGCCTACGCTCACTCCCTGACCAAGCACGAGCTCATC
CACTCGGACATCAAACTGTACCGCTGCGATTATTGCAACAAGGACTTCCG
TCTGCTGCATCACATGCGCCAGCACGAGGAGACCAAACTGCACCAGAACG
CCGTAATGCTGGCCGAGAGCATGAAGGTGGAAATGGTGGCCGAGCAGGGG
GGCGGGAACGAGATCCGAATTCAAGCTCACGCAAGCTTTCTAGACCAT
BO01108.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1167 | CG10267-PC | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Zif-RB | 1167 | CG10267-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Zif-RA | 1167 | CG10267-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-RC | 1455 | CG10267-RC | 140..1303 | 17..1180 | 5820 | 100 | Plus |
Zif-RB | 1394 | CG10267-RB | 79..1242 | 17..1180 | 5820 | 100 | Plus |
Zif-RA | 1463 | CG10267-RA | 148..1311 | 17..1180 | 5820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6457493..6458109 | 161..777 | 3085 | 100 | Plus |
3R | 32079331 | 3R | 6458403..6458670 | 913..1180 | 1340 | 100 | Plus |
3R | 32079331 | 3R | 6457287..6457430 | 17..160 | 720 | 100 | Plus |
3R | 32079331 | 3R | 6458167..6458301 | 778..912 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:41:48 has no hits.
BO01108.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:10 Download gff for
BO01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-RA | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:05 Download gff for
BO01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-RA | 130..1303 | 9..1186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:45 Download gff for
BO01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 148..1311 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:11 Download gff for
BO01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10267-RA | 130..1303 | 9..1186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:25 Download gff for
BO01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zif-RA | 148..1311 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:25 Download gff for
BO01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6458167..6458301 | 778..912 | 100 | -> | Plus |
3R | 6458403..6458670 | 913..1182 | 99 | | Plus |
3R | 6457287..6457430 | 17..160 | 100 | -> | Plus |
3R | 6457493..6458109 | 161..777 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:45 Download gff for
BO01108.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2283009..2283152 | 17..160 | 100 | -> | Plus |
arm_3R | 2283215..2283831 | 161..777 | 100 | -> | Plus |
arm_3R | 2283889..2284023 | 778..912 | 100 | -> | Plus |
arm_3R | 2284125..2284392 | 913..1182 | 99 | | Plus |
BO01108.pep Sequence
Translation from 16 to 1198
> BO01108.pep
MRVELTPQTCRVCLAQSERLQRLDEIREEGEESPNEMLIQLLGVSYSNLN
DREHIPDGICKSCKVELNMAYQFREKALRKQMEIEEYCRELGLLDESDVM
MIKEEDGSQQQCDEEMYILEETTTGEEEHQEEKGHEEYLEVDTSDQQECI
GDTIEYLEDNYTIEMNSDQTEIVLESEKQYEETPSQQLALQEAAKASLKA
RRGRVRRGLNSLTTSDGTEKGGYICDVCGNFYEKRGRMMEHRRRHDGICQ
YACELCDAKFQVREQLRKHMYSHTGSKPYKCSFCSRQFFYESVLKSHENV
HRGIKPYVCKVCDKAFAYAHSLTKHELIHSDIKLYRCDYCNKDFRLLHHM
RQHEETKLHQNAVMLAESMKVEMVAEQGGGNEIRIQAHASFLDH
BO01108.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zif-PC | 388 | CG10267-PC | 1..388 | 1..388 | 2065 | 100 | Plus |
Zif-PB | 388 | CG10267-PB | 1..388 | 1..388 | 2065 | 100 | Plus |
Zif-PA | 388 | CG10267-PA | 1..388 | 1..388 | 2065 | 100 | Plus |
M1BP-PA | 418 | CG9797-PA | 12..409 | 9..384 | 399 | 27.6 | Plus |
CG14710-PB | 415 | CG14710-PB | 10..400 | 10..361 | 384 | 27.7 | Plus |