Clone Sequence Records
BO01110.3prime Sequence
812 bp (739 high quality bases) assembled on 2005-11-30
> BO01110.3prime
ATGGTCTAGAAAGCTTGCCTCGGCGCCATCGTCGCTGCCCTCTTCTTCGT
TCTCATTCTCGATCATGTCGATGTCCTCCTCGAGGTCGCCCTCCTTCTTG
TCCGTTGGCTTCTCGTAGACAGCGGTCAGCGGGGAAATGCACACGCCGTT
CCAGACGGACATTTCGCGCACAACGCTGGTGTTGCCCTCCAGTCCCAAAA
TGTGTTTGTATCCGCCGTGGGCCAGCACGCGCAGTAGTGTCTGCGATGTG
TAGCAGCACACATCCTGCTGCTCCAATGTCATGGCAGTGTGCACACGGAT
GTGTCCCGGCTCGGTGGGATCCGTGATGCCGGCCGAGCCCGGCAGGAAGA
GCCCGGCGGAGAGTAGCTGAAAGACGCGACGGAAGGCCAGGTTGATGGGC
AGTGCCTGTCGCGACGGGTTGTTCATGATGGCCAAATGGGCGATCAGGTC
CAGCATCCAGGCCGACAGCGGCGAAAAAGCGTCGAAACGCCTAGTGAGAT
CCTTGAGAATGCGAATGAGCACCTTTATCGAGGAGTGGTGGGCATTTTCC
TCAAACCAGCGCGTGTGCCGAATGGCAGCCAGATGGCTCTGCATCAGTTT
GTGATCCAAATGGATCTCAGGCTCCAGCTTGCGAAGATTCTGCGGCAAGG
TGGCGATCAGAATGCGCACCTTGGCATGCACGTTGGCGATGTCGAAGCCC
CGCTCATGGATCTGTACGGTGTGCTGATCGCCCTTGGTCAGAACTTCAGT
CTTCATGCTGGCCTTCAGGTCGGCCTCCACTTTTTTGGCCAGCGCATCGA
CGGCCTCCTTGG
BO01110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-PA | 1191 | CG5641-RA | 395..1188 | 812..19 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-RA | 1365 | CG5641-RA | 476..1269 | 812..19 | 3970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12427891..12428684 | 19..812 | 3970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:10:04 has no hits.
BO01110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:29 Download gff for
BO01110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-PA | 395..1191 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:45 Download gff for
BO01110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-PA | 395..1191 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:25 Download gff for
BO01110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 476..1272 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:33 Download gff for
BO01110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 476..1272 | 15..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:33 Download gff for
BO01110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12427888..12428684 | 15..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:25 Download gff for
BO01110.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8253610..8254406 | 15..812 | 99 | | Plus |
BO01110.5prime Sequence
864 bp (761 high quality bases) assembled on 2005-11-30
> BO01110.5prime
GAAGTTATCAGTCGACATGGTTCGCGGAGCTCTCCGAGGTGGCCGCCCCA
TGCGCGGCGGCATACGTCCGCCGTTCAAAAAGACATTCGTGCCGCGCCAC
CCCTTCGATCTGACCCTCGCGGAGGTCTTCTTTCCCAAAGTTCCATCCGC
CGGCGCCGTTGACGATTCTGCTTTGACTGCGGCGCTGCTGAAGCGTAACC
AGGACCTGAGTCCCACTCCCAGCGAGCAGACGGCTATTGGCAATCTAGTG
ACCAAGGTGCAGGCTGTTCTCGACAATCTGGTGGTTGCACCCGGGGATCT
GACAACTTGTCAACTGGAGGAAGTGCGTCAGGTTGGCTCCTTCAAGAAGG
GCACCATACTGACGGGCAACAATGTAGCCGATGTGGTGGTTATCCTCAAA
ACCCTGCCCACCAAGGAGGCCGTCGATGCGCTGGCCAAAAAAGTGGAGGC
CGACCTGAAGGCCAGCATGAAGACTGAAGTTCTGACCAAGGGCGATCAGC
ACACCGTACAGATCCATGAGCGGGGCTTCGACATCGCCAACGTGCATGCC
AAGGTGCGCATTCTGATCGCCACCTTGCCGCAGAATCTTCGCAAGCTGGA
GCCTGAGATCCATTTGGATCACAAACTGATGCAGAGCCATCTGGCTGCCA
TTCGGCACACGCGCTGGTTTGAGGAAAATGCCCACCACTCCTCGATAAAG
GTGCTCATTCGCATTCTCAAGGATCTCACTAGGCGTTTCGACGCTTTTTC
GCCGCTGTCGGCCTGGATGCTGGACCTGATCGCCCATTTGGCCATCATGA
AACACCCGTCGCGACAGGCACTGCCCATCAACCTGGCCTTCCGTCGCGTC
TTTCAGCTACTCTC
BO01110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-PA | 1191 | CG5641-RA | 1..848 | 17..864 | 4190 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-RA | 1365 | CG5641-RA | 82..929 | 17..864 | 4210 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12428231..12428784 | 864..311 | 2740 | 99.6 | Minus |
| 3R | 32079331 | 3R | 12429036..12429201 | 182..17 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 12428846..12428975 | 310..181 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 18:44:24 has no hits.
BO01110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:30 Download gff for
BO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:47 Download gff for
BO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:09 Download gff for
BO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..929 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:11 Download gff for
BO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..929 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:11 Download gff for
BO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12428231..12428784 | 311..864 | 99 | <- | Minus |
| 3R | 12428846..12428974 | 182..310 | 100 | <- | Minus |
| 3R | 12429037..12429208 | 9..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:09 Download gff for
BO01110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8253953..8254506 | 311..864 | 99 | <- | Minus |
| arm_3R | 8254568..8254696 | 182..310 | 100 | <- | Minus |
| arm_3R | 8254759..8254930 | 9..181 | 97 | | Minus |
BO01110.complete Sequence
1222 bp (1222 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629424
> BO01110.complete
GAAGTTATCAGTCGACATGGTTCGCGGAGCTCTCCGAGGTGGCCGCCCCA
TGCGCGGCGGCATACGTCCGCCGTTCAAAAAGACATTCGTGCCGCGCCAC
CCCTTCGATCTGACCCTCGCGGAGGTCTTCTTTCCCAAAGTTCCATCCGC
CGGCGCCGTTGACGATTCTGCTTTGACTGCGGCGCTGCTGAAGCGTAACC
AGGACCTGAGTCCCACTCCCAGCGAGCAGACGGCTATTGGCAATCTAGTG
ACCAAGGTGCAGGCTGTTCTCGACAATCTGGTGGTTGCACCCGGGGATCT
GACAACTTGTCAACTGGAGGAAGTGCGTCAGGTTGGCTCCTTCAAGAAGG
GCACCATACTGACGGGCAACAATGTAGCCGATGTGGTGGTTATCCTCAAA
ACCCTGCCCACCAAGGAGGCCGTCGATGCGCTGGCCAAAAAAGTGGAGGC
CGACCTGAAGGCCAGCATGAAGACTGAAGTTCTGACCAAGGGCGATCAGC
ACACCGTACAGATCCATGAGCGGGGCTTCGACATCGCCAACGTGCATGCC
AAGGTGCGCATTCTGATCGCCACCTTGCCGCAGAATCTTCGCAAGCTGGA
GCCTGAGATCCATTTGGATCACAAACTGATGCAGAGCCATCTGGCTGCCA
TTCGGCACACGCGCTGGTTTGAGGAAAATGCCCACCACTCCTCGATAAAG
GTGCTCATTCGCATTCTCAAGGATCTCACTAGGCGTTTCGACGCTTTTTC
GCCGCTGTCGGCCTGGATGCTGGACCTGATCGCCCATTTGGCCATCATGA
ACAACCCGTCGCGACAGGCACTGCCCATCAACCTGGCCTTCCGTCGCGTC
TTTCAGCTACTCTCCGCCGGGCTCTTCCTGCCGGGCTCGGCCGGCATCAC
GGATCCCACCGAGCCGGGACACATCCGTGTGCACACTGCCATGACATTGG
AGCAGCAGGATGTGTGCTGCTACACATCGCAGACACTACTGCGCGTGCTG
GCCCACGGCGGATACAAACACATTTTGGGACTGGAGGGCAACACCAGCGT
TGTGCGCGAAATGTCCGTCTGGAACGGCGTGTGCATTTCCCCGCTGACCG
CTGTCTACGAGAAGCCAACGGACAAGAAGGAGGGCGACCTCGAGGAGGAC
ATCGACATGATCGAGAATGAGAACGAAGAAGAGGGCAGCGACGATGGCGC
CGAGGCAAGCTTTCTAGACCAT
BO01110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-RA | 1191 | CG5641-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-RA | 1365 | CG5641-RA | 82..1269 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12427891..12428784 | 1204..311 | 4470 | 100 | Minus |
| 3R | 32079331 | 3R | 12429036..12429201 | 182..17 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 12428846..12428975 | 310..181 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:45:28 has no hits.
BO01110.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:12 Download gff for
BO01110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 1..1191 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:07 Download gff for
BO01110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 73..1270 | 9..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:56 Download gff for
BO01110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 82..1269 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:12 Download gff for
BO01110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 73..1270 | 9..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:39 Download gff for
BO01110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 82..1269 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:39 Download gff for
BO01110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12427889..12428784 | 311..1206 | 99 | <- | Minus |
| 3R | 12428846..12428974 | 182..310 | 100 | <- | Minus |
| 3R | 12429037..12429201 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:56 Download gff for
BO01110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8253611..8254506 | 311..1206 | 99 | <- | Minus |
| arm_3R | 8254568..8254696 | 182..310 | 100 | <- | Minus |
| arm_3R | 8254759..8254923 | 17..181 | 100 | | Minus |
BO01110.pep Sequence
Translation from 16 to 1222
> BO01110.pep
MVRGALRGGRPMRGGIRPPFKKTFVPRHPFDLTLAEVFFPKVPSAGAVDD
SALTAALLKRNQDLSPTPSEQTAIGNLVTKVQAVLDNLVVAPGDLTTCQL
EEVRQVGSFKKGTILTGNNVADVVVILKTLPTKEAVDALAKKVEADLKAS
MKTEVLTKGDQHTVQIHERGFDIANVHAKVRILIATLPQNLRKLEPEIHL
DHKLMQSHLAAIRHTRWFEENAHHSSIKVLIRILKDLTRRFDAFSPLSAW
MLDLIAHLAIMNNPSRQALPINLAFRRVFQLLSAGLFLPGSAGITDPTEP
GHIRVHTAMTLEQQDVCCYTSQTLLRVLAHGGYKHILGLEGNTSVVREMS
VWNGVCISPLTAVYEKPTDKKEGDLEEDIDMIENENEEEGSDDGAEASFL
DH
BO01110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-PA | 396 | CG5641-PA | 1..396 | 1..396 | 2030 | 100 | Plus |
| Zn72D-PD | 884 | CG5215-PD | 545..836 | 62..352 | 194 | 25.7 | Plus |
| Zn72D-PC | 884 | CG5215-PC | 545..836 | 62..352 | 194 | 25.7 | Plus |
| Zn72D-PF | 884 | CG5215-PF | 545..836 | 62..352 | 194 | 25.7 | Plus |
| Zn72D-PB | 884 | CG5215-PB | 545..836 | 62..352 | 194 | 25.7 | Plus |
