Clone Sequence Records
BO01112.3prime Sequence
854 bp (840 high quality bases) assembled on 2005-11-30
> BO01112.3prime
ATGGTCTAGAAAGCTTGCTTCCGATTTGATCGCCGTTATGGTAATGCTGG
GCGTTTGATGTGGCGCGATCAGTTTGGGCGGAGCACGTGCCGTGCCACGG
CTGAGGGTGACGCCGCCACTGGACGCCATTGGCATGCTGCCGCCTTCCGG
GCCGGACGAATCTTGGTCGCCCTTCTCCTGTGCCGAATGGAAGCGACCAC
CCTCGCCACGAGCCCGATTCATGGCGTGGCGATGACGAGATTCGTGCAGA
TACTTGCACCGTTCCTTGGGTATGCGCGACTCTAGCTTGGCCCTGGCCTG
CCGCCGAATGAGAATACGTTTGTACTGCTTGGCATTCACATAGAGCGGCT
CCTCGTCCGCCTCGCCCTTGGAGCTCTCGTCCTCGCTGTTCGTATTCGTT
CCAGTTGTACTTGTGCTGACATCGGCGCTTATATTATTGACTGCAGCACT
GGCAGCCACCGCCGCCACCGTCTGCTGCTGTTGCTGCTGCTGCTGGTTTT
GGGTCTGGGATTGTACTTGTTGATGCTGCTGCTGTTGTTGTTGGGTAACC
ACTGTGCCCACTCCGGCGCCTACTCCGGCATTGGCGGCCGCTGCATTCAC
CGCTGCCATCGCTGTCTGCGGCACCATTATAATCTGTTGCCCAGCTGTGG
GTGCCGCCTGATTAGCGCTCGGTGCTGGATTGATCTGCACCAGCTGCCCA
TTGATATTGAGGTAGTGCGGCGTCGGCTGGGCTGCCATGGCAGCTGCGGC
GTTGGCCGCTGCATTCGGATCCAAGGCGGCAATGGTGGGCGTCTGATAGA
ATATAGTCTGGCCATCGGGCAGCTGCATCACCTGCATCTGTGGCTGCTGC
TGCG
BO01112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3891-PA | 1200 | CG3891-RA | 362..1197 | 854..19 | 4180 | 100 | Minus |
| CG6700-PA | 2625 | CG6700-RA | 493..519 | 543..517 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YA-RA | 2055 | CG3891-RA | 580..1415 | 854..19 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9440696..9441531 | 19..854 | 4180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:29:53 has no hits.
BO01112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:31 Download gff for
BO01112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-PA | 362..1200 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:49 Download gff for
BO01112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-PA | 362..1200 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:04 Download gff for
BO01112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 580..1415 | 19..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:06:36 Download gff for
BO01112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 580..1415 | 19..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:36 Download gff for
BO01112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9440696..9441531 | 19..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:04 Download gff for
BO01112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9433796..9434631 | 19..854 | 100 | | Plus |
BO01112.5prime Sequence
847 bp (815 high quality bases) assembled on 2005-11-30
> BO01112.5prime
GAAGTTATCAGTCGACATGGAAAACCATTTCAGCGCCACCAGTCGCCCCT
CAGCCACGCCCAGAATGTGCACCACCGCCTCTGCCGTCGGTGCTGCCGCC
AGCGCCGCCGCCGCCGCCGGCAACAACAATAACAACAGCAATAGCAGCAG
CAACAACAACGCAACAACCGGCAACAATTTAAGTGTTAGCACTGCAGCCG
GAGGAGCCACAAATGCCGCAGCAACGGCACAACCCATCCAAGTGATACCA
ATGCCCATGCTGCCCACCGGAGCGGCGCAAATCATAATTGGCCAGCAGCC
ACAGGGTCAGGCGACGGCGACGGGTCTGCAGCCACAATTGATACCGCTGC
AGGCCAACCAGATTATGCTGCAGGCTGCGCAGCAGCAGCCACAGATGCAG
GTGATGCAGCTGCCCGATGGCCAGACTATATTCTATCAGACGCCCACCAT
TGCCGCCTTGGATCCGAATGCAGCGGCCAACGCCGCAGCTGCCATGGCAG
CCCAGCCGACGCCGCACTACCTCAATATCAATGGGCAGCTGGTGCAGATC
AATCCAGCACCGAGCGCTAATCAGGCGGCACCCACAGCTGGGCAACAGAT
TATAATGGTGCCGCAGACAGCGATGGCAGCGGTGAATGCAGCGGCCGCCA
ATGCCGGAGTAGGCGCCGGAGTGGGCACAGTGGTTACCCAACAACAACAG
CAGCAGCATCAACAAGTACAATCCCAGACCCAAAACCAGCAGCAGCAGCA
ACAGCAGCAGACGGTGGCGGCGGTGGCTGCCAGTGCTGCAGTCAATAATA
TAAGCGCCGATGTCAGCACAAGTACAACTGGGAACGATTACGAACAG
BO01112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3891-PA | 1200 | CG3891-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
| CG6700-PA | 2625 | CG6700-RA | 493..519 | 689..715 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YA-RA | 2055 | CG3891-RA | 219..1048 | 17..847 | 4115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9441063..9441892 | 847..17 | 4090 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:12:35 has no hits.
BO01112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:32 Download gff for
BO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-PA | 1..830 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:50 Download gff for
BO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-PA | 1..830 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:30 Download gff for
BO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 211..1048 | 7..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:08:57 Download gff for
BO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 211..1048 | 7..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:08:57 Download gff for
BO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9441063..9441900 | 7..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:30 Download gff for
BO01112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9434163..9435000 | 7..847 | 99 | | Minus |
BO01112.complete Sequence
1231 bp (1231 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629425
> BO01112.complete
GAAGTTATCAGTCGACATGGAAAACCATTTCAGCGCCACCAGTCGCCCCT
CAGCCACGCCCAGAATGTGCACCACCGCCTCTGCCGTCGGTGCTGCCGCC
AGCGCCGCCGCCGCCGCCGGCAACAACAATAACAACAGCAATAGCAGCAG
CAACAACAACGCAACAACCGGCAACAATTTAAGTGTTAGCACTGCAGCCG
GAGGAGCCACAAATGCCGCAGCAACGGCACAACCCATCCAAGTGATACCA
ATGCCCATGCTGCCCACCGGAGCGGCGCAAATCATAATTGGCCAGCAGCC
ACAGGGTCAGGCGACGGCGACGGGTCTGCAGCCACAATTGATACCGCTGC
AGGCCAACCAGATTATGCTGCAGGCTGCGCAGCAGCAGCCACAGATGCAG
GTGATGCAGCTGCCCGATGGCCAGACTATATTCTATCAGACGCCCACCAT
TGCCGCCTTGGATCCGAATGCAGCGGCCAACGCCGCAGCTGCCATGGCAG
CCCAGCCGACGCCGCACTACCTCAATATCAATGGGCAGCTGGTGCAGATC
AATCCAGCACCGAGCGCTAATCAGGCGGCACCCACAGCTGGGCAACAGAT
TATAATGGTGCCGCAGACAGCGATGGCAGCGGTGAATGCAGCGGCCGCCA
ATGCCGGAGTAGGCGCCGGAGTGGGCACAGTGGTTACCCAACAACAACAG
CAGCAGCATCAACAAGTACAATCCCAGACCCAAAACCAGCAGCAGCAGCA
ACAGCAGCAGACGGTGGCGGCGGTGGCTGCCAGTGCTGCAGTCAATAATA
TAAGCGCCGATGTCAGCACAAGTACAACTGGAACGAATACGAACAGCGAG
GACGAGAGCTCCAAGGGCGAGGCGGACGAGGAGCCGCTCTATGTGAATGC
CAAGCAGTACAAACGTATTCTCATTCGGCGGCAGGCCAGGGCCAAGCTAG
AGTCGCGCATACCCAAGGAACGGTGCAAGTATCTGCACGAATCTCGTCAT
CGCCACGCCATGAATCGGGCTCGTGGCGAGGGTGGTCGCTTCCATTCGGC
ACAGGAGAAGGGCGACCAAGATTCGTCCGGCCCGGAAGGCGGCAGCATGC
CAATGGCGTCCAGTGGCGGCGTCACCCTCAGCCGTGGCACGGCACGTGCT
CCGCCCAAACTGATCGCGCCACATCAAACGCCCAGCATTACCATAACGGC
GATCAAATCGGAAGCAAGCTTTCTAGACCAT
BO01112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YA-RA | 1200 | CG3891-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YA-RA | 2055 | CG3891-RA | 219..1415 | 17..1213 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9440696..9441892 | 1213..17 | 5985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:53 has no hits.
BO01112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:13 Download gff for
BO01112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-RA | 1..1200 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:08 Download gff for
BO01112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-RA | 197..1401 | 7..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:22 Download gff for
BO01112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 219..1415 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:13 Download gff for
BO01112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-RA | 197..1401 | 7..1213 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:12 Download gff for
BO01112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 219..1415 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:12 Download gff for
BO01112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9440694..9441892 | 17..1215 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:22 Download gff for
BO01112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9433794..9434992 | 17..1215 | 99 | | Minus |
BO01112.pep Sequence
Translation from 16 to 1231
> BO01112.pep
MENHFSATSRPSATPRMCTTASAVGAAASAAAAAGNNNNNSNSSSNNNAT
TGNNLSVSTAAGGATNAAATAQPIQVIPMPMLPTGAAQIIIGQQPQGQAT
ATGLQPQLIPLQANQIMLQAAQQQPQMQVMQLPDGQTIFYQTPTIAALDP
NAAANAAAAMAAQPTPHYLNINGQLVQINPAPSANQAAPTAGQQIIMVPQ
TAMAAVNAAAANAGVGAGVGTVVTQQQQQQHQQVQSQTQNQQQQQQQQTV
AAVAASAAVNNISADVSTSTTGTNTNSEDESSKGEADEEPLYVNAKQYKR
ILIRRQARAKLESRIPKERCKYLHESRHRHAMNRARGEGGRFHSAQEKGD
QDSSGPEGGSMPMASSGGVTLSRGTARAPPKLIAPHQTPSITITAIKSEA
SFLDH
BO01112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YA-PA | 399 | CG3891-PA | 1..399 | 1..399 | 2001 | 100 | Plus |
| Hmx-PE | 592 | CG43748-PE | 170..439 | 1..289 | 165 | 25.9 | Plus |
| Hmx-PC | 592 | CG43748-PC | 170..439 | 1..289 | 165 | 25.9 | Plus |
| Hmx-PD | 718 | CG43748-PD | 170..439 | 1..289 | 165 | 25.9 | Plus |
| bun-PF | 1097 | CG42281-PM | 604..879 | 27..297 | 155 | 27.2 | Plus |
