Clone Sequence Records
BO01113.3prime Sequence
860 bp (783 high quality bases) assembled on 2005-11-30
> BO01113.3prime
ATGGTCTAGAAAGCTTGCCTCCTGCTCCTTTTCCTCTTCATCCTGCAGGG
TCTGTGCCAGCAGCTCCTCGACGGGGTCATCCTTCAGCGACTGGGTGATC
TTTTCGAGGACCAAAGGCTGTCGCTCGCGCACCGCCTCATCATCTTCCTT
GTCCAATTGCAGGCAGGCCAGTTTGGATAGCCTCGAATGTTTGCTGCGTC
CAGCATCGCGTCGTCGCTTGCGGGATGTGGACTTAGTTTTGCCCCCTTCT
CCAGTCTTACTCTTGTCCTTCTTCTTGGCTTTCAATTCCTTTTTCGTCGC
ACCATCTTTGTGATCCCTGAGCAGATGTCTCGCCAGATTCTGCGCACTGC
TGAAACAGCGGCCGCAGTCCAAGGCCTGGCACTCGAAACGCCTGCCCGAG
TGGGCGGTGAGCATGTGCTGGCGTAGATTCCTGAGGTACGAGTAACTCTT
GCCGCATCCCTCCTCGTTGCAGGTGAAGGAGGTGGCGCACTCATCCGTCT
GCGCCGCCTCCTTGTGCTTCACCTCGAGGTGACGCTTCAGTTCGCTCGGC
TTGTCGAAGGCACTATCGCAGCGGTCGCACTTATGGCGATTCTTGCCGTG
CAACGAGTCGCGACAATGCTTCGTATACAACGTCCATTTGTCGAACTGCA
GCGGGCAGCCGGGACACTCGTACAGCTTGCAGCTGGGCTCGTGACTCTGG
CACTGCCACTGCTGGTAGAAGCCGCGCGAGCACTTCGAGCAGCTGTACGG
ATACTCCAGCGTGTGCTCCCTGATCTCGTGGCGCTTCAGCTTGAGCTTTT
GCGAGATTTTGGCACTGCACTGGCTGCACGGATAGACCTTTGGGCTCTCG
TGGGTTTCGC
BO01113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-PA | 1212 | CG9609-RA | 368..1209 | 860..19 | 4185 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-RA | 1834 | CG9609-RA | 626..1467 | 860..19 | 4195 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16785482..16786323 | 19..860 | 4195 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:55:50 has no hits.
BO01113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:32 Download gff for
BO01113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-PA | 368..1212 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:51 Download gff for
BO01113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-PA | 368..1212 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:04 Download gff for
BO01113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 626..1473 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:22 Download gff for
BO01113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 626..1473 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:22 Download gff for
BO01113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16785476..16786323 | 13..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:04 Download gff for
BO01113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16679509..16680356 | 13..860 | 99 | | Plus |
BO01113.5prime Sequence
869 bp (742 high quality bases) assembled on 2005-11-30
> BO01113.5prime
GAAGTTATCAGTCGACATGCCGCCTGGAACGCAAATTGCCAGCGACAGCG
ATATGGAGACCGCTCTGGAGGAGTTCAAGCAGCGCCAGGGACGCCGCAAC
AGCATCGGCTCGGCCAAGTACGCGTGCAGCATGCCCAAATGCGAGGCCAC
ATTCAAGCGGCTGGACCAATTGGATCGCCATGAGTATCATCACACAGGGA
TTAAGAAGCACGCCTGCTCGTACGAGGGTTGCGACAAGACGTACTCGATT
GTGACGCACTTAAAGAGGCATCTGCGCAGCACCCACGAGCGTCCGGAGTC
GGCGGCCAAGAAGACGGTGAAGTGCGCGCTGGAGGAGTGCAGCAAGATGT
TCATCTCGGTTAGCAACATGACCCGCCACATGCGCGAAACCCACGAGAGC
CCAAAGGTCTATCCGTGCAGCCAGTGCAGTGCCAAATTCTCGCAAAAGCT
CAAGCTGAAGCGCCACGAGATCAGGGAGCACACGCTGGAGTATCCGTACA
GCTGCTCGAAGTGCTCGCGCGGCTTCTACCAGCAGTGGCAGTGCCAGAGT
CACGAGCCCAGCTGCAAGCTGTACGAGTGTCCCGGCTGCCCGCTGCAGTT
CGACAAATGGACGTTGTATACGAAGCATTGTCGCGACTCGTTGCACGGCA
AGAATCGCCATAAGTGCGACCGCTGCGATAGTGCCTTCGACAAGCCGAGC
GAACTGAAGCGTCACCTCGAGGTGAAGCACAAGGAGGCGGCGCAGACGGA
TGAGTGCGCCACCTCCTTCACCTGCAACGAGGAGGGATGCGGCAAGAGTT
ACTCGTACCTCAGGAATCTACGCCAGCACATGCTCACCGCCCACTCGGGC
AGGCGTTTCGAGTGCCAGG
BO01113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-PA | 1212 | CG9609-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-RA | 1834 | CG9609-RA | 259..1111 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16785838..16786504 | 869..203 | 3335 | 100 | Minus |
| X | 23542271 | X | 16786565..16786750 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:30:21 has no hits.
BO01113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:33 Download gff for
BO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-PA | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:52 Download gff for
BO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-PA | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:06 Download gff for
BO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 259..1111 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:38 Download gff for
BO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 259..1111 | 17..869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:38 Download gff for
BO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16785838..16786504 | 203..869 | 100 | <- | Minus |
| X | 16786565..16786750 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:06 Download gff for
BO01113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16679871..16680537 | 203..869 | 100 | <- | Minus |
| arm_X | 16680598..16680783 | 17..202 | 100 | | Minus |
BO01113.complete Sequence
1243 bp (1243 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629426
> BO01113.complete
GAAGTTATCAGTCGACATGCCGCCTGGAACGCAAATTGCCAGCGACAGCG
ATATGGAGACCGCTCTGGAGGAGTTCAAGCAGCGCCAGGGACGCCGCAAC
AGCATCGGCTCGGCCAAGTACGCGTGCAGCATGCCCAAATGCGAGGCCAC
ATTCAAGCGGCTGGACCAATTGGATCGCCATGAGTATCATCACACAGGGA
TTAAGAAGCACGCCTGCTCGTACGAGGGTTGCGACAAGACGTACTCGATT
GTGACGCACTTAAAGAGGCATCTGCGCAGCACCCACGAGCGTCCGGAGTC
GGCGGCCAAGAAGACGGTGAAGTGCGCGCTGGAGGAGTGCAGCAAGATGT
TCATCTCGGTTAGCAACATGACCCGCCACATGCGCGAAACCCACGAGAGC
CCAAAGGTCTATCCGTGCAGCCAGTGCAGTGCCAAATTCTCGCAAAAGCT
CAAGCTGAAGCGCCACGAGATCAGGGAGCACACGCTGGAGTATCCGTACA
GCTGCTCGAAGTGCTCGCGCGGCTTCTACCAGCAGTGGCAGTGCCAGAGT
CACGAGCCCAGCTGCAAGCTGTACGAGTGTCCCGGCTGCCCGCTGCAGTT
CGACAAATGGACGTTGTATACGAAGCATTGTCGCGACTCGTTGCACGGCA
AGAATCGCCATAAGTGCGACCGCTGCGATAGTGCCTTCGACAAGCCGAGC
GAACTGAAGCGTCACCTCGAGGTGAAGCACAAGGAGGCGGCGCAGACGGA
TGAGTGCGCCACCTCCTTCACCTGCAACGAGGAGGGATGCGGCAAGAGTT
ACTCGTACCTCAGGAATCTACGCCAGCACATGCTCACCGCCCACTCGGGC
AGGCGTTTCGAGTGCCAGGCCTTGGACTGCGGCCGCTGTTTCAGCAGTGC
GCAGAATCTGGCGAGACATCTGCTCAGGGATCACAAAGATGGTGCGACGA
AAAAGGAATTGAAAGCCAAGAAGAAGGACAAGAGTAAGACTGGAGAAGGG
GGCAAAACTAAGTCCACATCCCGCAAGCGACGACGCGATGCTGGACGCAG
CAAACATTCGAGGCTATCCAAACTGGCCTGCCTGCAATTGGACAAGGAAG
ATGATGAGGCGGTGCGCGAGCGACAGCCTTTGGTCCTCGAAAAGATCACC
CAGTCGCTGAAGGATGACCCCGTCGAGGAGCTGCTGGCACAGACCCTGCA
GGATGAAGAGGAAAAGGAGCAGGAGGCAAGCTTTCTAGACCAT
BO01113.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-RA | 1212 | CG9609-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-RA | 1834 | CG9609-RA | 259..1467 | 17..1225 | 6045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16785482..16786504 | 1225..203 | 5115 | 100 | Minus |
| X | 23542271 | X | 16786565..16786750 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:36:39 has no hits.
BO01113.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:14 Download gff for
BO01113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 1..1212 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:10 Download gff for
BO01113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 229..1443 | 17..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:37 Download gff for
BO01113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 259..1467 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:14 Download gff for
BO01113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 229..1443 | 17..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:31 Download gff for
BO01113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 259..1467 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:31 Download gff for
BO01113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16785480..16786504 | 203..1227 | 99 | <- | Minus |
| X | 16786565..16786750 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:37 Download gff for
BO01113.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16679513..16680537 | 203..1227 | 99 | <- | Minus |
| arm_X | 16680598..16680783 | 17..202 | 100 | | Minus |
BO01113.pep Sequence
Translation from 16 to 1243
> BO01113.pep
MPPGTQIASDSDMETALEEFKQRQGRRNSIGSAKYACSMPKCEATFKRLD
QLDRHEYHHTGIKKHACSYEGCDKTYSIVTHLKRHLRSTHERPESAAKKT
VKCALEECSKMFISVSNMTRHMRETHESPKVYPCSQCSAKFSQKLKLKRH
EIREHTLEYPYSCSKCSRGFYQQWQCQSHEPSCKLYECPGCPLQFDKWTL
YTKHCRDSLHGKNRHKCDRCDSAFDKPSELKRHLEVKHKEAAQTDECATS
FTCNEEGCGKSYSYLRNLRQHMLTAHSGRRFECQALDCGRCFSSAQNLAR
HLLRDHKDGATKKELKAKKKDKSKTGEGGKTKSTSRKRRRDAGRSKHSRL
SKLACLQLDKEDDEAVRERQPLVLEKITQSLKDDPVEELLAQTLQDEEEK
EQEASFLDH
BO01113.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-PA | 403 | CG9609-PA | 1..403 | 1..403 | 2185 | 100 | Plus |
| CG32772-PE | 520 | CG32772-PE | 132..403 | 38..327 | 279 | 27.4 | Plus |
| CG32772-PC | 520 | CG32772-PC | 132..403 | 38..327 | 279 | 27.4 | Plus |
| crol-PG | 878 | CG14938-PG | 293..583 | 22..309 | 277 | 29.2 | Plus |
| CG5245-PA | 501 | CG5245-PA | 49..322 | 4..306 | 273 | 26.5 | Plus |
| crol-PG | 878 | CG14938-PG | 353..612 | 27..306 | 265 | 31.1 | Plus |
| crol-PG | 878 | CG14938-PG | 437..644 | 27..241 | 263 | 31.4 | Plus |
| crol-PG | 878 | CG14938-PG | 221..439 | 65..306 | 155 | 23.6 | Plus |
