Clone Sequence Records
BO01115.3prime Sequence
826 bp (714 high quality bases) assembled on 2005-11-30
> BO01115.3prime
ATGGTCTAGAAAGCTTGCTCCAAGTAGTTTTTGCTGGGCAATAATGCGCC
GGAGCAGGTCGGGTCGGCGATGTGGAGCGTGTTTCTTGGTGCGATTGAAT
TTGAACTTGCCTCGCCGCCGCTTGACATTTCGACCTTTCTGAGATTCGGT
TGTGGGGAGTGCAAGGAAGAGCTTGGCGGCCGATGACTTCCATTGGAGGT
ATGCGTGTGGTCCTGTGGTTAAACATTGTCTTATAGAACCATTCGAACGC
TCGTTGTTTGGCGCGTTTATTATGCAGTGGAGGGTCTTGCCATGGCCATA
TGGTCCTGTAGAGCGGTGCGTCGCTGTTGCGGCGTGCTGCTCGAAATGTG
TGCATTCCGCGATTTTGGTCAGGCCATTATACCGGTATCGGTACAGCTCT
GACTGTCGAATGCGCAGTTCCTTTTCGCGCTCCAGTGATCCCAATAGCCG
CTCATACTCGTTACACGTGTAGAACTGGGCGTAGACCCGAAATCTGTCCC
GAAACTCGCGCTGCTCCTTGGTGAGTCCTTGTTGCTGAGCGTAATTTCTG
TTTCGGAAGAAATTTGATACTAATTGATAGTCCCTGACCATCCGTTTCCT
GCGAGCACGCTCTCTGAGTCGGCGGGTGTATATGTCAACGTGGGCCAGCT
TAAGCATCACATCCACCTCCGTATCCTCGGAGCTTAATGAGATGTTCGAG
ATCAGTTGCTCTGCCGTGGGATCGTACTCCCGCTCAAAGCTGTCCCTGTT
GGGCATGTAGCCCAGCTGCATGGCCTCATCGGAGTTGATTTCCAGTGGAG
GCAAGGTAGAGAGAGCATTGGTGCCC
BO01115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9638-PA | 1257 | Ada2b-RA | 447..1254 | 826..19 | 4040 | 100 | Minus |
| CG9638-PB | 1668 | Ada2b-RB | 447..990 | 826..283 | 2720 | 100 | Minus |
| CG9638-PB | 1668 | Ada2b-RB | 991..1184 | 212..19 | 970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 2636 | CG9638-RC | 539..1346 | 826..19 | 4040 | 100 | Minus |
| Ada2b-RA | 2154 | CG9638-RA | 539..1346 | 826..19 | 4040 | 100 | Minus |
| Ada2b-RB | 2084 | CG9638-RB | 539..1082 | 826..283 | 2720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8238731..8239274 | 283..826 | 2720 | 100 | Plus |
| 3R | 32079331 | 3R | 8238103..8238252 | 133..282 | 750 | 100 | Plus |
| 3R | 32079331 | 3R | 8237922..8238035 | 19..132 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 18:44:38 has no hits.
BO01115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:36 Download gff for
BO01115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-PA | 447..1257 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:56 Download gff for
BO01115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9638-PA | 447..1257 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:10 Download gff for
BO01115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 539..1354 | 9..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:13 Download gff for
BO01115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 539..1354 | 9..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:13 Download gff for
BO01115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8237914..8238035 | 9..132 | 96 | <- | Plus |
| 3R | 8238103..8238252 | 133..282 | 100 | <- | Plus |
| 3R | 8238731..8239274 | 283..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:10 Download gff for
BO01115.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4063636..4063757 | 9..132 | 96 | <- | Plus |
| arm_3R | 4063825..4063974 | 133..282 | 100 | <- | Plus |
| arm_3R | 4064453..4064996 | 283..826 | 100 | | Plus |
BO01115.5prime Sequence
767 bp (765 high quality bases) assembled on 2005-11-30
> BO01115.5prime
GAAGTTATCAGTCGACATGACCACAATCGCGGATTTATTCACAAAGTATA
ATTGCACAAATTGCCAGGATGATATTCAGGGCATTCGAGTGCACTGCGCG
GAGTGCGAAAACTTCGATTTGTGTCTGCAATGCTTTGCCGCAGGTGCGGA
GATCGGCGCCCATCAAAACAACCACTCCTACCAGTTCATGGACACCGGCA
CTTCCATATTGAGTGTATTTCGTGGAAAGGGGGCGTGGACGGCACGAGAG
GAAATCCGCCTGTTGGATGCAATCGAGCAGTACGGCTTTGGAAACTGGGA
GGACATTAGCAAGCACATTGAGACGAAGTCAGCGGAGGATGCCAAAGAGG
AGTACGTGAATAAGTTTGTAAATGGCACGATTGGAAGGGCCACTTGGACG
CCGGCCCAGAGCCAGAGACCCCGCCTTATCGATCACACTGGAGACGACGA
CGCTGGTCCTCTGGGCACCAATGCTCTCTCTACCTTGCCTCCACTGGAAA
TCAACTCCGATGAGGCCATGCAGCTGGGCTACATGCCCAACAGGGACAGC
TTTGAGCGGGAGTACGATCCCACGGCAGAGCAACTGATCTCGAACATCTC
ATTAAGCTCCGAGGATACGGAGGTGGATGTGATGCTTAAGCTGGCCCACG
TTGACATATACACCCGCCGACTCAGAGAGCGTGCTCGCAGGANACGGATG
GTCAGGGACTATCAATTAGTATCAAATTTCTTCCGAAACAGAAATTACGC
TCAGCAACAAGGACTCA
BO01115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9638-PA | 1257 | Ada2b-RA | 1..751 | 17..767 | 3736 | 99.8 | Plus |
| CG9638-PB | 1668 | Ada2b-RB | 1..751 | 17..767 | 3736 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 2636 | CG9638-RC | 93..843 | 17..767 | 3744 | 99.9 | Plus |
| Ada2b-RB | 2084 | CG9638-RB | 93..843 | 17..767 | 3744 | 99.9 | Plus |
| Ada2b-RA | 2154 | CG9638-RA | 93..843 | 17..767 | 3744 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8238970..8239610 | 767..127 | 3179 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8240310..8240423 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:30:52 has no hits.
BO01115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:37 Download gff for
BO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9638-PB | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:17:58 Download gff for
BO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9638-PB | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:08 Download gff for
BO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..842 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:39 Download gff for
BO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..842 | 17..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:39 Download gff for
BO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8238971..8239606 | 131..766 | 99 | <- | Minus |
| 3R | 8240310..8240423 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:08 Download gff for
BO01115.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4064693..4065328 | 131..766 | 99 | <- | Minus |
| arm_3R | 4066032..4066145 | 17..130 | 100 | | Minus |
BO01115.complete Sequence
1288 bp (1288 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629427
> BO01115.complete
GAAGTTATCAGTCGACATGACCACAATCGCGGATTTATTCACAAAGTATA
ATTGCACAAATTGCCAGGATGATATTCAGGGCATTCGAGTGCACTGCGCG
GAGTGCGAAAACTTCGATTTGTGTCTGCAATGCTTTGCCGCAGGTGCGGA
GATCGGCGCCCATCAAAACAACCACTCCTACCAGTTCATGGACACCGGCA
CTTCCATATTGAGTGTATTTCGTGGAAAGGGGGCGTGGACGGCACGAGAG
GAAATCCGCCTGTTGGATGCAATCGAGCAGTACGGCTTTGGAAACTGGGA
GGACATTAGCAAGCACATTGAGACGAAGTCAGCGGAGGATGCCAAAGAGG
AGTACGTGAATAAGTTTGTAAATGGCACGATTGGAAGGGCCACTTGGACG
CCGGCCCAGAGCCAGAGACCCCGCCTTATCGATCACACTGGAGACGACGA
CGCTGGTCCTCTGGGCACCAATGCTCTCTCTACCTTGCCTCCACTGGAAA
TCAACTCCGATGAGGCCATGCAGCTGGGCTACATGCCCAACAGGGACAGC
TTTGAGCGGGAGTACGATCCCACGGCAGAGCAACTGATCTCGAACATCTC
ATTAAGCTCCGAGGATACGGAGGTGGATGTGATGCTTAAGCTGGCCCACG
TTGACATATACACCCGCCGACTCAGAGAGCGTGCTCGCAGGAAACGGATG
GTCAGGGACTATCAATTAGTATCAAATTTCTTCCGAAACAGAAATTACGC
TCAGCAACAAGGACTCACCAAGGAGCAGCGCGAGTTTCGGGACAGATTTC
GGGTCTACGCCCAGTTCTACACGTGTAACGAGTATGAGCGGCTATTGGGA
TCACTGGAGCGCGAAAAGGAACTGCGCATTCGACAGTCAGAGCTGTACCG
ATACCGGTATAATGGCCTGACCAAAATCGCGGAATGCACACATTTCGAGC
AGCACGCCGCAACAGCGACGCACCGCTCTACAGGACCATATGGCCATGGC
AAGACCCTCCACTGCATAATAAACGCGCCAAACAACGAGCGTTCGAATGG
TTCTATAAGACAATGTTTAACCACAGGACCACACGCATACCTCCAATGGA
AGTCATCGGCCGCCAAGCTCTTCCTTGCACTCCCCACAACCGAATCTCAG
AAAGGTCGAAATGTCAAGCGGCGGCGAGGCAAGTTCAAATTCAATCGCAC
CAAGAAACACGCTCCACATCGCCGACCCGACCTGCTCCGGCGCATTATTG
CCCAGCAAAAACTACTTGGAGCAAGCTTTCTAGACCAT
BO01115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 1257 | CG9638-PC | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| Ada2b-RA | 1257 | CG9638-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| Ada2b-RB | 1668 | CG9638-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-RC | 2636 | CG9638-RC | 93..1346 | 17..1270 | 6270 | 100 | Plus |
| Ada2b-RA | 2154 | CG9638-RA | 93..1346 | 17..1270 | 6270 | 100 | Plus |
| Ada2b-RB | 2084 | CG9638-RB | 93..1082 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8238731..8239610 | 1006..127 | 4385 | 99.9 | Minus |
| 3R | 32079331 | 3R | 8238103..8238252 | 1156..1007 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 8237922..8238035 | 1270..1157 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 8240310..8240423 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:55:42 has no hits.
BO01115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:15 Download gff for
BO01115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 1..1257 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:11 Download gff for
BO01115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 90..1351 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:50 Download gff for
BO01115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1346 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:15 Download gff for
BO01115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 90..1351 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:16 Download gff for
BO01115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2b-RA | 93..1346 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:16 Download gff for
BO01115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8240310..8240423 | 17..130 | 100 | | Minus |
| 3R | 8237918..8238035 | 1157..1272 | 98 | <- | Minus |
| 3R | 8238103..8238252 | 1007..1156 | 100 | <- | Minus |
| 3R | 8238731..8239606 | 131..1006 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:50 Download gff for
BO01115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4063640..4063757 | 1157..1272 | 98 | <- | Minus |
| arm_3R | 4063825..4063974 | 1007..1156 | 100 | <- | Minus |
| arm_3R | 4064453..4065328 | 131..1006 | 100 | <- | Minus |
| arm_3R | 4066032..4066145 | 17..130 | 100 | | Minus |
BO01115.pep Sequence
Translation from 16 to 1288
> BO01115.pep
MTTIADLFTKYNCTNCQDDIQGIRVHCAECENFDLCLQCFAAGAEIGAHQ
NNHSYQFMDTGTSILSVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKH
IETKSAEDAKEEYVNKFVNGTIGRATWTPAQSQRPRLIDHTGDDDAGPLG
TNALSTLPPLEINSDEAMQLGYMPNRDSFEREYDPTAEQLISNISLSSED
TEVDVMLKLAHVDIYTRRLRERARRKRMVRDYQLVSNFFRNRNYAQQQGL
TKEQREFRDRFRVYAQFYTCNEYERLLGSLEREKELRIRQSELYRYRYNG
LTKIAECTHFEQHAATATHRSTGPYGHGKTLHCIINAPNNERSNGSIRQC
LTTGPHAYLQWKSSAAKLFLALPTTESQKGRNVKRRRGKFKFNRTKKHAP
HRRPDLLRRIIAQQKLLGASFLDH
BO01115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2b-PC | 418 | CG9638-PC | 1..418 | 1..418 | 2220 | 100 | Plus |
| Ada2b-PA | 418 | CG9638-PA | 1..418 | 1..418 | 2220 | 100 | Plus |
| Ada2b-PB | 555 | CG9638-PB | 1..341 | 1..348 | 1762 | 96.6 | Plus |
| Ada2a-PG | 527 | CG43663-PG | 81..379 | 13..305 | 245 | 26.3 | Plus |
| Ada2a-PC | 527 | CG43663-PC | 81..379 | 13..305 | 245 | 26.3 | Plus |
