Clone Sequence Records
BO01120.3prime Sequence
898 bp (808 high quality bases) assembled on 2005-11-30
> BO01120.3prime
ATGGTCTAGAAAGCTTGCCCCATCCGCTTGGACAGTAGCATCCATTTTTG
GCATTTTTGACTGCTCCTCAACTTTCAGGCGATGGTGCTTCGACTTGTAG
TGGGTGGCCAGGGCGTTCCTTCTATTGAAGAACGTTTGGCAGAGCTCGCA
GTGGAATGGCTGTTCCCCCGTGTGGACCACGATGTGGTCCTTGAGAGCCG
TCGAAGTCTTGAAGGCCTTCTGGCATGTGGAGCACACGTGTGGTCGGTGG
ACGGGACTCTCCTTGTGGTTGCGCTCGTGGTTCAGCCGCTTGAGGCAGTT
GTCAAATCGCTTGCCGCAGTACTTGCACACGTAGGGCAGCTCCCCGCGAT
GCTTAATCCGCACGTGCAAATTGAGCAGGTGTTGGGTGAACTCCATGCGG
TCGCACTCCTGGCACTGGAACTCCTTGGTGCCCTTGTGCCGTCTGAGGTG
CACATTGAAGTTGCCCTTCTCGCTAAAAGTTTTGCCGCATTGGTCGCAGA
AATATAGTCGGTGCTCCAGTGCATAGGCTCTTTTGGCAGCTCCCCATTTG
TTTCGTGTGGCATACTTTTCCTCTTTGGTCTTATTGGTAGTTGAGTCAAT
ATTCTCTATTTTAGCCATGTCCTTGCCAGGACACTCCTCTAAGCACCCTT
TGCTCCTCGGTTTTCTTCGGTTTTTCTGTACTTCCCCGATGACTTGTAGT
GTTCTGGGCTCTTCCTTCATGACTTGNGGCATTTCGGATGCTGGCTCTTC
GTGATTCATGGACTCCACTGGATAATCAGATGAAAGCTGAGGCTCGCTCT
TCACCTGAATAGGATCCTCGCACCGGAGAGGATCGACGAGATCGGCAGGC
GGGTATTTCGGGGACAACTAAAGGGTAAATTGGGGGTTTCTACTGTCT
BO01120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-PA | 1266 | CG17806-RA | 430..1263 | 852..19 | 4151 | 99.8 | Minus |
| CG17806-PA | 1266 | CG17806-RA | 398..431 | 885..852 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 480..1357 | 898..19 | 4324 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17801987..17802731 | 152..898 | 3609 | 99.5 | Plus |
| 3R | 32079331 | 3R | 17801798..17801930 | 19..151 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:43:59 has no hits.
BO01120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:44 Download gff for
BO01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 386..1266 | 15..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:08 Download gff for
BO01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 386..1266 | 15..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:20:40 Download gff for
BO01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 480..1366 | 10..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:29:14 Download gff for
BO01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 480..1366 | 10..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:29:14 Download gff for
BO01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17801789..17801930 | 10..151 | 97 | <- | Plus |
| 3R | 17801987..17802731 | 152..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:20:40 Download gff for
BO01120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13627511..13627652 | 10..151 | 97 | <- | Plus |
| arm_3R | 13627709..13628453 | 152..898 | 99 | | Plus |
BO01120.5prime Sequence
726 bp (725 high quality bases) assembled on 2005-11-30
> BO01120.5prime
GAAGTTATCAGTCGACATGACCACGCTGTGCCGCACCTGTGGCCAGGAGG
CGGAGCACGCCAAGTCACTTTTCGATAAGGAGGCCAGAGATGTCCTGAGC
AACATCCTCAAGCTGACGGGCTTTTGGTTGAGGAACCAGCCAGGTGTGCC
AACGAGGATCTGCTTATCCTGCTTGCTGGATCTGAACGATGCCATCGCAT
TCCGGGAGCGCTGCATCAGGACCAATTCGTCTTGGTTCGAAAAGCAGGGC
AAACAAGAGGATTCGGACACTGAGACTGCAAGGGAAGGCGGGAATAACAG
GTTAGAAAGTAGGGTGGATGTTATGCCCATTAGTATTGCACAGCCGCAAA
GGAGAAGGATTCTACCACAACGCAGCAAGAAAGTGGATGGAGTGCCTCTT
AAGACAGTAGAAACCCCAATTTACCCTTTAGTTGTCCCGGAAATACCGCC
TGCCGATCTCGTCGATCCTCTCCGGTGCGAGGATCCTATTCAGGTGAAGA
GCGAGCCTCAGCTTTCATCTGATTATCCAGTGGAGTCCATGAATCACGAA
GAGCCAGCATCCGAAATGCCCCAAGTCATGAAGGAAGAGCCCAGAACACT
ACAAGTCATCGGGGAAGTACAGAAAAACCGAAGAAAACCGAGGAGCAAAG
GGTGCTTAGAGGAGTGTCCTGGCAAGGACATGGCTAANATAGAGAATATT
GACTCAACTACCAATAAGACCAAAGA
BO01120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-PA | 1266 | CG17806-RA | 1..710 | 17..726 | 3531 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 95..804 | 17..726 | 3539 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17802407..17803006 | 726..127 | 2989 | 99.8 | Minus |
| 3R | 32079331 | 3R | 17803056..17803166 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:17:39 has no hits.
BO01120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:45 Download gff for
BO01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 1..709 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:10 Download gff for
BO01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 1..709 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:33:12 Download gff for
BO01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..803 | 10..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:36 Download gff for
BO01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..803 | 10..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:36 Download gff for
BO01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17802408..17803005 | 128..725 | 99 | <- | Minus |
| 3R | 17803056..17803169 | 10..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:33:12 Download gff for
BO01120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13628130..13628727 | 128..725 | 99 | <- | Minus |
| arm_3R | 13628778..13628891 | 10..127 | 96 | | Minus |
BO01120.complete Sequence
1297 bp (1297 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629429
> BO01120.complete
GAAGTTATCAGTCGACATGACCACGCTGTGCCGCACCTGTGGCCAGGAGG
CGGAGCACGCCAAGTCACTTTTCGATAAGGAGGCCAGAGATGTCCTGAGC
AACATCCTCAAGCTGACGGGCTTTTGGTTGAGGAACCAGCCAGGTGTGCC
AACGAGGATCTGCTTATCCTGCTTGCTGGATCTGAACGATGCCATCGCAT
TCCGGGAGCGCTGCATCAGGACCAATTCGTCTTGGTTCGAAAAGCAGGGC
AAACAAGAGGATTCGGACACTGAGACTGCAAGGGAAGGCGGGAATAACAG
GTTAGAAAGTAGGGTGGATGTTATGCCCATTAGTATTGCACAGCCGCAAA
GGAGAAGGATTCTACCACAACGCAGCAAGAAAGTGGATGGAGTGCCTCTT
AAGACAGTAGAAACCCCAATTTACCCTTTAGTTGTCCCGGAAATACCGCC
TGCCGATCTCGTCGATCCTCTCCGGTGCGAGGATCCTATTCAGGTGAAGA
GCGAGCCTCAGCTTTCATCTGATTATCCAGTGGAGTCCATGAATCACGAA
GAGCCAGCATCCGAAATGCCCCAAGTCATGAAGGAAGAGCCCAGAACACT
ACAAGTCATCGGGGAAGTACAGAAAAACCGAAGAAAACCGAGGAGCAAAG
GGTGCTTAGAGGAGTGTCCTGGCAAGGACATGGCTAAAATAGAGAATATT
GACTCAACTACCAATAAGACCAAAGAGGAAAAGTATGCCACACGAAACAA
ATGGGGAGCTGCCAAAAGAGCCTATGCACTGGAGCACCGACTATATTTCT
GCGACCAATGCGGCAAAACTTTTAGCGAGAAGGGCAACTTCAATGTGCAC
CTCAGACGGCACAAGGGCACCAAGGAGTTCCAGTGCCAGGAGTGCGACCG
CATGGAGTTCACCCAACACCTGCTCAATTTGCACGTGCGGATTAAGCATC
GCGGGGAGCTGCCCTACGTGTGCAAGTACTGCGGCAAGCGATTTGACAAC
TGCCTCAAGCGGCTGAACCACGAGCGCAACCACAAGGAGAGTCCCGTCCA
CCGACCACACGTGTGCTCCACATGCCAGAAGGCCTTCAAGACTTCGACGG
CTCTCAAGGACCACATCGTGGTCCACACGGGGGAACAGCCATTCCACTGC
GAGCTCTGCCAAACGTTCTTCAATAGAAGGAACGCCCTGGCCACCCACTA
CAAGTCGAAGCACCATCGCCTGAAAGTTGAGGAGCAGTCAAAAATGCCAA
AAATGGATGCTACTGTCCAAGCGGATGGGGCAAGCTTTCTAGACCAT
BO01120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1266 | CG17806-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 95..1357 | 17..1279 | 6315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17801987..17803006 | 1146..127 | 5100 | 100 | Minus |
| 3R | 32079331 | 3R | 17801798..17801930 | 1279..1147 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 17803056..17803166 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:40:14 has no hits.
BO01120.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:03 Download gff for
BO01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 1..1266 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:54 Download gff for
BO01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 61..1335 | 10..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:31:06 Download gff for
BO01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 95..1357 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:03 Download gff for
BO01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 61..1335 | 10..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:50 Download gff for
BO01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 95..1357 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:50 Download gff for
BO01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17801796..17801930 | 1147..1281 | 98 | <- | Minus |
| 3R | 17801987..17803005 | 128..1146 | 100 | <- | Minus |
| 3R | 17803056..17803166 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:31:06 Download gff for
BO01120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13627518..13627652 | 1147..1281 | 98 | <- | Minus |
| arm_3R | 13627709..13628727 | 128..1146 | 100 | <- | Minus |
| arm_3R | 13628778..13628888 | 17..127 | 100 | | Minus |
BO01120.pep Sequence
Translation from 16 to 1297
> BO01120.pep
MTTLCRTCGQEAEHAKSLFDKEARDVLSNILKLTGFWLRNQPGVPTRICL
SCLLDLNDAIAFRERCIRTNSSWFEKQGKQEDSDTETAREGGNNRLESRV
DVMPISIAQPQRRRILPQRSKKVDGVPLKTVETPIYPLVVPEIPPADLVD
PLRCEDPIQVKSEPQLSSDYPVESMNHEEPASEMPQVMKEEPRTLQVIGE
VQKNRRKPRSKGCLEECPGKDMAKIENIDSTTNKTKEEKYATRNKWGAAK
RAYALEHRLYFCDQCGKTFSEKGNFNVHLRRHKGTKEFQCQECDRMEFTQ
HLLNLHVRIKHRGELPYVCKYCGKRFDNCLKRLNHERNHKESPVHRPHVC
STCQKAFKTSTALKDHIVVHTGEQPFHCELCQTFFNRRNALATHYKSKHH
RLKVEEQSKMPKMDATVQADGASFLDH
BO01120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-PA | 421 | CG17806-PA | 1..421 | 1..421 | 2276 | 100 | Plus |
| CG17802-PA | 439 | CG17802-PA | 1..436 | 1..415 | 510 | 29.8 | Plus |
| CG18764-PA | 409 | CG18764-PA | 1..400 | 1..405 | 468 | 30 | Plus |
| ranshi-PA | 346 | CG9793-PA | 5..338 | 4..406 | 446 | 29.1 | Plus |
| CG8159-PB | 399 | CG8159-PB | 2..334 | 1..406 | 428 | 28.3 | Plus |
