Clone Sequence Records
BO01124.3prime Sequence
830 bp (731 high quality bases) assembled on 2005-11-30
> BO01124.3prime
ATGGTCTAGAAAGCTTGCCATCGAGAGCGTGCCCACTGCCGCCGCAGCGG
ACATCTGCGCACTGTGCTGCTGCTGCAGCTGGTGTGAGTGCGCCGCCACC
GCCGCCAAGGAGTGGCTGTGGGCGGCCAGGTGGGGATGCAGGCGCATGGC
GGGAATGTTCATCGCCGCCATGGGGTTCATCGAGTGGGCCAGCGAGTGGG
ACAGGTGCAGGCCCGGCTCCAGCTTCGCTTTGGCGTCCAGCAGCTGGCTG
TAGTCCGCATGCTGCACTCCCACGCCCATCACGTTCGGATCGCTACCCTT
CTTGTTCTGCTTGCGCTCCTTGGCGCGGCGGTTCTGGAACCAGATCTTAA
CCTGGCGCTCCGACAGCGACAGCGTCTGGGCGAGCTCGCTCTTCCGCCGG
ATGGTGATGTAGCGGGAGGTGCAGTACTCCTTCTCCAGCTCCAGGCGCTG
GAAGTCGGTGTACACCACGCGGTACTTATCCTTGGTGCGGGTTTTGCCTG
GTTGTGGTTGTGCTGGATAGGCGGGCTTCTTCATCCAGTCGAAGTATGGC
GGCTTCGATGGCGATGTCCTGTTGTTGTTGCTCACCGAATTGTTATTGTT
GTTGTTGTTATGGGTGGATGGGCTATTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGGCGACGGCACTCAAATGGTGTGCCAAGTGATGATGCGGCGAC
GAGGCAGAAGTCGGCGCCCCCGGGCTAGAGATTTTCGAGCCCGAAACGGT
AATCGGTGGCGACGGCAGACCTTCGGCGATGTGCTGCTGATGGTTGGGTG
GTGCGGAACCTGGTCCTCCATCGGTGGCCC
BO01124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1759-PA | 1284 | cad-RA | 470..1281 | 830..19 | 4035 | 99.8 | Minus |
CG1759-PB | 1284 | cad-RB | 470..1281 | 830..19 | 4035 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cad-RB | 2353 | CG1759-RB | 684..1495 | 830..19 | 4045 | 99.9 | Minus |
cad-RA | 2516 | CG1759-RA | 847..1658 | 830..19 | 4045 | 99.9 | Minus |
cad-RC | 2570 | CG1759-RC | 1233..1712 | 498..19 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20781796..20782277 | 500..19 | 2410 | 100 | Minus |
2L | 23513712 | 2L | 20771577..20771910 | 830..497 | 1655 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:32:06 has no hits.
BO01124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:51 Download gff for
BO01124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-PA | 470..1284 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:20 Download gff for
BO01124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1759-PB | 470..1284 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:11 Download gff for
BO01124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RA | 847..1658 | 19..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:25 Download gff for
BO01124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RA | 847..1658 | 19..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:25 Download gff for
BO01124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20771577..20771909 | 498..830 | 99 | -> | Minus |
2L | 20781799..20782277 | 19..497 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:11 Download gff for
BO01124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20771577..20771909 | 498..830 | 99 | -> | Minus |
arm_2L | 20781799..20782277 | 19..497 | 100 | | Minus |
BO01124.5prime Sequence
836 bp (760 high quality bases) assembled on 2005-11-30
> BO01124.5prime
GAAGTTATCAGTCGACATGGTTTCGCACTACTACAACACACTGCCCTACA
CACAAAAGCACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAG
CCATGGAACTGGACGCCCAACTACCACCACACGCCGCCGAACCACCAGTT
CCTGGGCGATGTGGACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCC
ACCAGATGTACTACAACTCCCATCACATGTTCCACTCGGCGGCGGCGGCC
TCTGCCGGGGAGTGGCACTCACCCGCCTCGAGCACGGCGGATAACTTCGT
TCAGAATGTGCCCACGTCGGCCCACCAGCTGATGCAGCAGCACCACCATC
ATCACGCCCATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGC
GGTGGTGCACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGG
CGTCGGAGGAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAG
GACCAGGTTCCGCACCACCCAACCATCAGCAGCACATCGCCGAAGGTCTG
CCGTCGCCACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGC
GCCGACTTCTGCCTCGTCGCCGCATCATCACTTGGCACACCATTTGAGTG
CCGTCGCCAACAACAACAACAACAACAACAACAACAACAATAGCCCATCC
ACCCATAACAACAACAACAATAACAATTCGGTGAGCAACAACAACAGGAC
ATCGCCATCGAAAGCGCCATACTTCGACTGGATGAAGAAGCCCGCCTATC
CAGCACAACCACAACCAGGCAAAACCCGCACCAAGG
BO01124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1759-PA | 1284 | cad-RA | 1..820 | 17..836 | 4050 | 99.7 | Plus |
CG1759-PB | 1284 | cad-RB | 1..820 | 17..836 | 4050 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cad-RB | 2353 | CG1759-RB | 215..1034 | 17..836 | 4070 | 99.8 | Plus |
cad-RA | 2516 | CG1759-RA | 378..1197 | 17..836 | 4070 | 99.8 | Plus |
cad-RC | 2570 | CG1759-RC | 378..1179 | 17..818 | 3980 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20771108..20771910 | 17..819 | 3985 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-11 02:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 5095..5139 | 20..64 | 117 | 73.3 | Plus |
BO01124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:52 Download gff for
BO01124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:21 Download gff for
BO01124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1759-PB | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:42:53 Download gff for
BO01124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RA | 373..1197 | 12..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:13 Download gff for
BO01124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RA | 373..1197 | 12..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:13 Download gff for
BO01124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20771103..20771909 | 12..818 | 99 | -> | Plus |
2L | 20781799..20781816 | 819..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:42:53 Download gff for
BO01124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20771103..20771909 | 12..818 | 99 | -> | Plus |
arm_2L | 20781799..20781816 | 819..836 | 100 | | Plus |
BO01124.complete Sequence
1315 bp (1315 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629431
> BO01124.complete
GAAGTTATCAGTCGACATGGTTTCGCACTACTACAACACACTGCCCTACA
CACAAAAGCACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAG
CCATGGAACTGGACGCCCAACTACCACCACACGCCGCCGAACCACCAGTT
CCTGGGCGATGTGGACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCC
ACCAGATGTACTACAACTCCCATCACATGTTCCACTCGGCGGCGGCGGCC
TCTGCCGGGGAGTGGCACTCACCCGCCTCGAGCACGGCGGATAACTTCGT
TCAGAATGTGCCCACGTCGGCCCACCAGCTGATGCAGCAGCACCACCATC
ATCACGCCCATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGC
GGTGGTGCACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGG
CGTCGGAGGAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAG
GACCAGGTTCCGCACCACCCAACCATCAGCAGCACATCGCCGAAGGTCTG
CCGTCGCCACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGC
GCCGACTTCTGCCTCGTCGCCGCATCATCACTTGGCACACCATTTGAGTG
CCGTCGCCAACAACAACAACAACAACAACAACAACAACAATAGCCCATCC
ACCCATAACAACAACAACAATAACAATTCGGTGAGCAACAACAACAGGAC
ATCGCCATCGAAGCCGCCATACTTCGACTGGATGAAGAAGCCCGCCTATC
CAGCACAACCACAACCAGGCAAAACCCGCACCAAGGATAAGTACCGCGTG
GTGTACACCGACTTCCAGCGCCTGGAGCTGGAGAAGGAGTACTGCACCTC
CCGCTACATCACCATCCGGCGGAAGAGCGAGCTCGCCCAGACGCTGTCGC
TGTCGGAGCGCCAGGTTAAGATCTGGTTCCAGAACCGCCGCGCCAAGGAG
CGCAAGCAGAACAAGAAGGGTAGCGATCCGAACGTGATGGGCGTGGGAGT
GCAGCATGCGGACTACAGCCAGCTGCTGGACGCCAAAGCGAAGCTGGAGC
CGGGCCTGCACCTGTCCCACTCGCTGGCCCACTCGATGAACCCCATGGCG
GCGATGAACATTCCCGCCATGCGCCTGCATCCCCACCTGGCCGCCCACAG
CCACTCCTTGGCGGCGGTGGCGGCGCACTCACACCAGCTGCAGCAGCAGC
ACAGTGCGCAGATGTCCGCTGCGGCGGCAGTGGGCACGCTCTCGATGGCA
AGCTTTCTAGACCAT
BO01124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cad-RB | 1284 | CG1759-PB | 1..1281 | 17..1297 | 6405 | 100 | Plus |
cad-RA | 1284 | CG1759-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
cad-RC | 1338 | CG1759-PC | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cad-RB | 2353 | CG1759-RB | 215..1495 | 17..1297 | 6405 | 100 | Plus |
cad-RA | 2516 | CG1759-RA | 378..1658 | 17..1297 | 6405 | 100 | Plus |
cad-RC | 2570 | CG1759-RC | 378..1179 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20771108..20771910 | 17..819 | 4015 | 100 | Plus |
2L | 23513712 | 2L | 20781796..20782277 | 816..1297 | 2410 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 5095..5139 | 20..64 | 117 | 73.3 | Plus |
BO01124.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:05 Download gff for
BO01124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RB | 1..1284 | 17..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:55 Download gff for
BO01124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RB | 215..1495 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:27 Download gff for
BO01124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RA | 378..1658 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:05 Download gff for
BO01124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RB | 210..1495 | 12..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:50 Download gff for
BO01124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cad-RA | 378..1658 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:50 Download gff for
BO01124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20771108..20771909 | 17..818 | 100 | -> | Plus |
2L | 20781799..20782277 | 819..1299 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:27 Download gff for
BO01124.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20771108..20771909 | 17..818 | 100 | -> | Plus |
arm_2L | 20781799..20782277 | 819..1299 | 99 | | Plus |
BO01124.pep Sequence
Translation from 16 to 1315
> BO01124.pep
MVSHYYNTLPYTQKHSAANLAYASAAGQPWNWTPNYHHTPPNHQFLGDVD
SSHAAHHAAAAHQMYYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPT
SAHQLMQQHHHHHAHASSSSASSGSSSSGGAPGAPQLNETNSSIGVGGAG
GGGGVGGATDGGPGSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSAS
SPHHHLAHHLSAVANNNNNNNNNNNSPSTHNNNNNNNSVSNNNRTSPSKP
PYFDWMKKPAYPAQPQPGKTRTKDKYRVVYTDFQRLELEKEYCTSRYITI
RRKSELAQTLSLSERQVKIWFQNRRAKERKQNKKGSDPNVMGVGVQHADY
SQLLDAKAKLEPGLHLSHSLAHSMNPMAAMNIPAMRLHPHLAAHSHSLAA
VAAHSHQLQQQHSAQMSAAAAVGTLSMASFLDH
BO01124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cad-PB | 427 | CG1759-PB | 1..427 | 1..427 | 2298 | 100 | Plus |
cad-PA | 427 | CG1759-PA | 1..427 | 1..427 | 2298 | 100 | Plus |
cad-PC | 445 | CG1759-PC | 1..445 | 1..427 | 2269 | 96 | Plus |
Scr-PB | 417 | CG1030-PB | 78..387 | 58..336 | 266 | 28.2 | Plus |
Scr-PA | 417 | CG1030-PA | 78..387 | 58..336 | 266 | 28.2 | Plus |