Clone Sequence Records
BO01125.3prime Sequence
711 bp (623 high quality bases) assembled on 2005-11-30
> BO01125.3prime
ATGGTCTAGAAAGCTTGCCAGATACTTCCGATAGTTGCGCAGATGGGCGT
TCGCGTCCTCGACCACGCCCACCGCAGCAGCGGCACTCTCGAAGGATGGT
GGCTCGATGACCATGCCGGGACTTGTCGGATCGCATGACGCTCCAACGGC
GCTATTTGGCCCCTTGGCTCGTCGCCTGCCACGTGTTCCAGCTCCCCGCG
ATCTGCGGCTGTTGGCCGAAGCACCCGATGCTCCTCCTCCGCCGCCGGAT
CCCGAAACTCCCGCTAAGCCTGCTCCCAGGCTGCCGCTTAGGATGCCTCC
GCTGGAGATTGGTCCTCCATTGCTGCCTGGCACACTCTCGCCAGATTCAA
TGGCCTCCAGCGATGCGTCCAGCGCCGCATCCGTCGTTGTGATACGCGAC
CTGGCCGCTGCACTGCGTCTCCGCGAGCTGGAGCTACCGCCGGAATTGCC
GCCACCGCCGGCGCCTCCTCCACCACCACCGCCGCCGGAATCTCCACCTC
GCTTGCCTGGTCGCCGCTTGCGCCTTTTTTTGTTACCATAGCGCGGATCA
TAATCGTACTCATCATCCGCCGGCGATTTGGGCTCCTCCAGCGAGTCCAC
ATCGTTCATATCCATGTCATCGTAGAACCACTCCTTGGGCAAAAGCTCCT
CTTTGACGGCCTGCTGCTGGTGCTGGTGCTGCTGATGTTGTTGCTGTTGA
CTGTCCTTGCT
BO01125.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12175-PB | 1287 | tth-RB | 592..1284 | 711..19 | 3390 | 99.5 | Minus |
| CG3606-PB | 1200 | caz-RB | 291..326 | 487..452 | 155 | 97.2 | Minus |
| CG3606-PA | 1200 | caz-RA | 291..326 | 487..452 | 155 | 97.2 | Minus |
| CG32809-PD | 3705 | CG32809-RD | 2479..2510 | 696..665 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 1198..1890 | 711..19 | 3420 | 99.6 | Minus |
| tth-RB | 2955 | CG12175-RB | 1015..1707 | 711..19 | 3420 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13614441..13615133 | 19..711 | 3420 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-04 18:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2369 | 711..661 | 162 | 82.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6781 | 699..661 | 159 | 89.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6802 | 699..661 | 159 | 89.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6823 | 699..661 | 159 | 89.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6856 | 711..661 | 152 | 79.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6760 | 699..661 | 150 | 87.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1531..1576 | 707..662 | 149 | 80.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2422 | 704..662 | 149 | 86 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6870 | 711..662 | 148 | 80 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2797..2849 | 711..661 | 143 | 79.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1565 | 699..661 | 141 | 84.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6873..6971 | 711..612 | 137 | 61 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1108 | 698..661 | 136 | 84.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2431 | 699..665 | 130 | 85.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2476 | 701..662 | 128 | 80 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1152 | 699..662 | 127 | 81.6 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 155..193 | 699..661 | 123 | 79.5 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9185..9223 | 699..661 | 123 | 79.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2473..2521 | 711..662 | 121 | 74 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2626..2703 | 711..631 | 117 | 67.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2639 | 711..661 | 116 | 74.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1552 | 710..662 | 114 | 73.5 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7964..7998 | 699..665 | 112 | 80 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9408..9442 | 699..665 | 112 | 80 | Minus |
BO01125.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:53 Download gff for
BO01125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-PB | 592..1287 | 15..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:22 Download gff for
BO01125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12175-PB | 592..1287 | 15..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:20 Download gff for
BO01125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 1015..1710 | 15..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:19 Download gff for
BO01125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 1015..1710 | 15..711 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:19 Download gff for
BO01125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13614438..13615133 | 15..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:20 Download gff for
BO01125.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13508471..13509166 | 15..711 | 99 | | Plus |
BO01125.5prime Sequence
678 bp (654 high quality bases) assembled on 2005-11-30
> BO01125.5prime
GAAGTTATCAGTCGACATGTCCTCCGCCGTTAACATCCAGATCGTCTCTA
TGCCGAATCTGGCCAAGATCGAGAGCTTCCTGAAGGATGTCAGCTACCGG
GAGACGATCGAGTACAGTGCCAACTTCAACACGCGCTTGTGCAGCGAACG
GCGCCACCGGCTGCCCTTCCTCGATCCGCAGACAGGCGTCGCCCAGAACC
ACTCGCAGCTCTTCCTGGACAAGCGACAGCGGATGCCCGGCTTCCGGCAG
GGCCAGATCTACACGTATCCGGCGGCCCGCTGGCGGAAGAGCCGTCGTCA
GTACTTGAGCAAGATGTACAGCCGCTTTCCCGAGCGTCCCTTCCAGGCGC
TACGCAAGGAGCACGAAGCTCTGGTGGCCAGCGGCGTCAATCTGGGACTG
AGCAGCCTGACCAGCGGTGTGGGCTCCATGCCCGGCAGCAATAGCCTGGC
CAGCAGCTCCTCCCTAACGCTCAATATGCTTACGGGCGGCGGAGCCGCGC
CGGCCGTACTTGGTTCCCTGCACAGTGACACTGCCCACGATTTTAATGGA
GCCTTCAGCCTGGAGGAGTCCAGCTCGCTGGGTGCCGCCGGCGGTGATAC
ATCCGACAGCAAGGACAGTCAACAGCAACAACATCAGCAGCACCAGCACC
AGCAGCAGGCCGTCAAAGAGGAGCTTTT
BO01125.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12175-PB | 1287 | tth-RB | 1..662 | 17..678 | 3285 | 99.8 | Plus |
| CG32809-PD | 3705 | CG32809-RD | 2479..2510 | 623..654 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 606..1268 | 16..678 | 3300 | 99.8 | Plus |
| tth-RB | 2955 | CG12175-RB | 423..1085 | 16..678 | 3300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13615063..13615424 | 678..317 | 1810 | 100 | Minus |
| X | 23542271 | X | 13615676..13615981 | 321..16 | 1515 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:17:46 has no hits.
BO01125.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:54 Download gff for
BO01125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-PB | 1..662 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:24 Download gff for
BO01125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12175-PB | 1..662 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:33:09 Download gff for
BO01125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1085 | 9..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:58 Download gff for
BO01125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 419..1085 | 9..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:58 Download gff for
BO01125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13615063..13615419 | 322..678 | 100 | <- | Minus |
| X | 13615676..13615985 | 9..321 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:33:09 Download gff for
BO01125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13509096..13509452 | 322..678 | 100 | <- | Minus |
| arm_X | 13509709..13510018 | 9..321 | 98 | | Minus |
BO01125.complete Sequence
1318 bp (1318 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629432
> BO01125.complete
GAAGTTATCAGTCGACATGTCCTCCGCCGTTAACATCCAGATCGTCTCTA
TGCCGAATCTGGCCAAGATCGAGAGCTTCCTGAAGGATGTCAGCTACCGG
GAGACGATCGAGTACAGTGCCAACTTCAACACGCGCTTGTGCAGCGAACG
GCGCCACCGGCTGCCCTTCCTCGATCCGCAGACAGGCGTCGCCCAGAACC
ACTCGCAGCTCTTCCTGGACAAGCGACAGCGGATGCCCGGCTTCCGGCAG
GGCCAGATCTACACGTATCCGGCGGCCCGCTGGCGGAAGAGCCGTCGTCA
GTACTTGAGCAAGATGTACAGCCGCTTTCCCGAGCGTCCCTTCCAGGCGC
TACGCAAGGAGCACGAAGCTCTGGTGGCCAGCGGCGTCAATCTGGGACTG
AGCAGCCTGACCAGCGGTGTGGGCTCCATGCCCGGCAGCAATAGCCTGGC
CAGCAGCTCCTCCCTAACGCTCAATATGCTTACGGGCGGCGGAGCCGCGC
CGGCCGTACTTGGTTCCCTGCACAGTGACACTGCCCACGATTTTAATGGA
GCCTTCAGCCTGGAGGAGTCCAGCTCGCTGGGTGCCGCCGGCGGTGATAC
ATCCGACAGCAAGGACAGTCAACAGCAACAACATCAGCAGCACCAGCACC
AGCAGCAGGCCGTCAAAGAGGAGCTTTTGCCCAAGGAGTGGTTCTACGAT
GACATGGATATGAACGATGTGGACTCGCTGGAGGAGCCCAAATCGCCGGC
GGATGATGAGTACGATTATGATCCGCGCTATGGTAACAAAAAAAGGCGCA
AGCGGCGACCAGGCAAGCGAGGTGGAGATTCCGGCGGCGGTGGTGGTGGA
GGAGGCGCCGGCGGTGGCGGCAATTCCGGCGGTAGCTCCAGCTCGCGGAG
ACGCAGTGCAGCGGCCAGGTCGCGTATCACAACGACGGATGCGGCGCTGG
ACGCATCGCTGGAGGCCATTGAATCTGGCGAGAGTGTGCCAGGCAGCAAT
GGAGGACCAATCTCCAGCGGAGGCATCCTAAGCGGCAGCCTGGGAGCAGG
CTTAGCGGGAGTTTCGGGATCCGGCGGCGGAGGAGGAGCATCGGGTGCTT
CGGCCAACAGCCGCAGATCGCGGGGAGCTGGAACACGTGGCAGGCGACGA
GCCAAGGGGCCAAATAGCGCCGTTGGAGCGTCATGCGATCCGACAAGTCC
CGGCATGGTCATCGAGCCACCATCCTTCGAGAGTGCCGCTGCTGCGGTGG
GCGTGGTCGAGGACGCGAACGCCCATCTGCGCAACTATCGGAAGTATCTG
GCAAGCTTTCTAGACCAT
BO01125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 1287 | CG12175-PC | 1..1284 | 17..1300 | 6360 | 99.7 | Plus |
| tth-RB | 1287 | CG12175-PB | 1..1284 | 17..1300 | 6360 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-RC | 3138 | CG12175-RC | 606..1890 | 16..1300 | 6365 | 99.7 | Plus |
| tth-RB | 2955 | CG12175-RB | 423..1707 | 16..1300 | 6365 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13614441..13615424 | 1300..317 | 4875 | 99.7 | Minus |
| X | 23542271 | X | 13615676..13615981 | 321..16 | 1515 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:55 has no hits.
BO01125.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:07 Download gff for
BO01125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 1..1287 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:18:00 Download gff for
BO01125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 370..1661 | 9..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:24 Download gff for
BO01125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 424..1707 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:07 Download gff for
BO01125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 370..1661 | 9..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:52 Download gff for
BO01125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tth-RB | 424..1707 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:52 Download gff for
BO01125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13614439..13615419 | 322..1302 | 99 | <- | Minus |
| X | 13615676..13615980 | 17..321 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:24 Download gff for
BO01125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13509709..13510013 | 17..321 | 99 | | Minus |
| arm_X | 13508472..13509452 | 322..1302 | 99 | <- | Minus |
BO01125.pep Sequence
Translation from 16 to 1318
> BO01125.pep
MSSAVNIQIVSMPNLAKIESFLKDVSYRETIEYSANFNTRLCSERRHRLP
FLDPQTGVAQNHSQLFLDKRQRMPGFRQGQIYTYPAARWRKSRRQYLSKM
YSRFPERPFQALRKEHEALVASGVNLGLSSLTSGVGSMPGSNSLASSSSL
TLNMLTGGGAAPAVLGSLHSDTAHDFNGAFSLEESSSLGAAGGDTSDSKD
SQQQQHQQHQHQQQAVKEELLPKEWFYDDMDMNDVDSLEEPKSPADDEYD
YDPRYGNKKRRKRRPGKRGGDSGGGGGGGGAGGGGNSGGSSSSRRRSAAA
RSRITTTDAALDASLEAIESGESVPGSNGGPISSGGILSGSLGAGLAGVS
GSGGGGGASGASANSRRSRGAGTRGRRRAKGPNSAVGASCDPTSPGMVIE
PPSFESAAAAVGVVEDANAHLRNYRKYLASFLDH
BO01125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tth-PC | 428 | CG12175-PC | 1..428 | 1..428 | 2201 | 100 | Plus |
| tth-PB | 428 | CG12175-PB | 1..428 | 1..428 | 2201 | 100 | Plus |
| d4-PA | 497 | CG2682-PA | 12..275 | 9..317 | 398 | 34.9 | Plus |
| d4-PD | 496 | CG2682-PD | 12..333 | 9..359 | 397 | 32.4 | Plus |
| d4-PC | 495 | CG2682-PC | 12..332 | 9..359 | 392 | 32 | Plus |
