Clone Sequence Records
BO01127.3prime Sequence
850 bp (715 high quality bases) assembled on 2005-11-30
> BO01127.3prime
ATGGTCTAGAAAGCTTGCGACACACACGAATATTCCCCTCATGGCACTAG
CCGCATTGTGGGCCACCGCGAAGCCACCGAAGTGGGTGGCCTCTGCACCA
CCTAGCTTCTGCCGCTTGACTTCCGCATGGGCGGTGGTGGTGTTCGGTGA
GTGGGCGGCGGAGTGGGAGGAACTGCTGCTGCTGGTGGTCAGGCACTCGG
CCTCCAGTTGGTAGAACTTCCGGCGCGGAGCCACCTCCACTTCTTGATCC
TCGGAGCCGCTGTCGTTGAAGCTGTGCACGGAGCTCCGCGAGGTCTTCAT
GCTCAGATCCATGGGTCCTTCTTGAGCGGAAACGGTGGGAGGATGCACTG
GTACAACGCTGGTGGTTTCGCCGCCAATGGAGCAAACCGAAACGGGCGAC
AAGCTCTGCATCTTGGCCGCAAAACTCAGCGGGCTGCTGCTAGTCGGAGT
GGTTGGCGTGGCTCGGATGGCAATGGGATGCAGGAGGCTTGCGGACGACT
GATGGCTGTGCACGGAGTGAACATCCTCCTCCAGGCAGACATCGATGGGC
GACTGGCGGGCCGAGGAGGTGGGCTGCACCACTGGTGGCTGGCTGGCGGG
ACTAAAGCGGTTCTGCGACTCAACGGAATCCACGCTCTGGCGGTGCTTGT
ACATCTCCTGCCGGTAAGCGGCATCGGCAGCAGAAGCCGCTGCAGCGGCA
GCACTTGCATGGTAGCCTGGGAAGAGGAGGTGTGGGGGCAGCTGGAAGGG
CGACTGGTGCGGTACACCGCCCATCATGCTGAAGAAGGGCAGGGCGGCGG
ATGGGTCGGACAGATAGCTGGGATAGCCCAGCAGAGGCATATGTGGATGA
BO01127.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4717-PA | 1290 | kni-RA | 456..1287 | 850..19 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kni-RB | 1911 | CG4717-RB | 571..1402 | 850..19 | 4160 | 100 | Minus |
kni-RA | 2100 | CG4717-RA | 760..1591 | 850..19 | 4160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20692839..20693670 | 19..850 | 4160 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 13:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 596..728 | 799..672 | 113 | 60.6 | Minus |
BO01127.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:57 Download gff for
BO01127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-PA | 457..1290 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:28 Download gff for
BO01127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4717-PA | 457..1290 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:33:19 Download gff for
BO01127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 761..1595 | 14..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:42 Download gff for
BO01127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 761..1595 | 14..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:42 Download gff for
BO01127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20692835..20693669 | 14..849 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:33:19 Download gff for
BO01127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20685935..20686769 | 14..849 | 99 | | Plus |
BO01127.5prime Sequence
852 bp (791 high quality bases) assembled on 2005-11-30
> BO01127.5prime
GAAGTTATCAGTCGACATGAACCAGACATGCAAAGTGTGCGGTGAGCCGG
CGGCGGGCTTCCATTTTGGCGCCTTCACCTGCGAGGGCTGCAAGTCCTTC
TTTGGCCGCTCTTACAACAACATCAGCACCATCAGCGAGTGCAAGAACGA
GGGCAAGTGCATCATCGACAAGAAGAACCGCACCACCTGCAAGGCGTGCC
GCTTGAGGAAGTGCTACAACGTGGGCATGTCGAAGGGGGGATCCCGCTAC
GGACGTCGCTCCAACTGGTTCAAGATCCATTGTCTGCTGCAGGAGCACGA
ACAGGCCGCCGCAGCGGCGGGCAAGGCGCCTCCATTAGCGGGTGGCGTAT
CGGTGGGTGGTGCCCCGTCGGCCTCTTCCCCGGTGGGCTCGCCACACACT
CCCGGATTTGGGGACATGGCCGCCCATTTGCACCACCATCATCAGCAGCA
GCAGCAGCAGCAGGTGCCGCGTCATCCACATATGCCTCTGCTGGGCTATC
CCAGCTATCTGTCCGACCCATCCGCCGCCCTGCCCTTCTTCAGCATGATG
GGCGGTGTACCGCACCAGTCGCCCTTCCAGCTGCCCCCACACCTCCTCTT
CCCAGGCTACCATGCAAGTGCTGCCGCTGCAGCGGCTTCTGCTGCCGATG
CCGCTTACCGGCAGGAGATGTACAAGCACCGCCAGAGCGTGGATTCCGTT
GAGTCGCAGAACCGCTTTAGTCCCGCCAGCCAGCCACCAGTGGTGCAGCC
CACCTCCTCGGCCCGCCAGTCGCCCATCGATGTCTGCCTGGAGGAGGATG
TTCACTCCGTGCACAGCCATCAGTCGTCCGCCAGCCTCCTGCATCCCATT
GC
BO01127.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4717-PA | 1290 | kni-RA | 1..836 | 17..852 | 4155 | 99.8 | Plus |
CG4761-PA | 1944 | knrl-RA | 232..308 | 221..297 | 235 | 92.2 | Plus |
CG7383-PB | 1122 | eg-RB | 226..281 | 242..297 | 180 | 92.8 | Plus |
CG7383-PA | 1122 | eg-RA | 226..281 | 242..297 | 180 | 92.8 | Plus |
CG4761-PA | 1944 | knrl-RA | 28..131 | 17..120 | 170 | 86.5 | Plus |
CG4761-PA | 1944 | knrl-RA | 151..212 | 140..201 | 160 | 90.3 | Plus |
CG32689-PA | 366 | CG32689-RA | 64..96 | 431..463 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kni-RB | 1911 | CG4717-RB | 116..951 | 17..852 | 4165 | 99.9 | Plus |
kni-RA | 2100 | CG4717-RA | 305..1140 | 17..852 | 4165 | 99.9 | Plus |
knrl-RB | 2925 | CG4761-RB | 992..1272 | 17..297 | 730 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20693290..20694049 | 852..93 | 3785 | 99.9 | Minus |
3L | 28110227 | 3L | 20599778..20599982 | 297..93 | 515 | 83.4 | Minus |
3L | 28110227 | 3L | 20694263..20694340 | 94..17 | 390 | 100 | Minus |
3L | 28110227 | 3L | 21816347..21816480 | 164..297 | 355 | 84.3 | Plus |
3L | 28110227 | 3L | 20602193..20602270 | 94..17 | 225 | 85.9 | Minus |
3L | 28110227 | 3L | 21814779..21814856 | 17..94 | 195 | 83.3 | Plus |
Blast to na_te.dros performed 2015-02-12 05:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2443..2519 | 113..192 | 150 | 67.5 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 596..728 | 523..650 | 113 | 60.6 | Plus |
BO01127.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:23:57 Download gff for
BO01127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:30 Download gff for
BO01127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4717-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:18 Download gff for
BO01127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 305..1140 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:41 Download gff for
BO01127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 305..1140 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:41 Download gff for
BO01127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20693290..20694047 | 95..852 | 99 | <- | Minus |
3L | 20694263..20694349 | 7..94 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:18 Download gff for
BO01127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20686390..20687147 | 95..852 | 99 | <- | Minus |
arm_3L | 20687363..20687449 | 7..94 | 95 | | Minus |
BO01127.complete Sequence
1321 bp (1321 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629433
> BO01127.complete
GAAGTTATCAGTCGACATGAACCAGACATGCAAAGTGTGCGGTGAGCCGG
CGGCGGGCTTCCATTTTGGCGCCTTCACCTGCGAGGGCTGCAAGTCCTTC
TTTGGCCGCTCTTACAACAACATCAGCACCATCAGCGAGTGCAAGAACGA
GGGCAAGTGCATCATCGACAAGAAGAACCGCACCACCTGCAAGGCGTGCC
GCTTGAGGAAGTGCTACAACGTGGGCATGTCGAAGGGGGGATCCCGCTAC
GGACGTCGCTCCAACTGGTTCAAGATCCATTGTCTGCTGCAGGAGCACGA
ACAGGCCGCCGCAGCGGCGGGCAAGGCGCCTCCATTAGCGGGTGGCGTAT
CGGTGGGTGGTGCCCCGTCGGCCTCTTCCCCGGTGGGCTCGCCACACACT
CCCGGATTTGGGGACATGGCCGCCCATTTGCACCACCATCATCAGCAGCA
GCAGCAGCAGCAGGTGCCGCGTCATCCACATATGCCTCTGCTGGGCTATC
CCAGCTATCTGTCCGACCCATCCGCCGCCCTGCCCTTCTTCAGCATGATG
GGCGGTGTACCGCACCAGTCGCCCTTCCAGCTGCCCCCACACCTCCTCTT
CCCAGGCTACCATGCAAGTGCTGCCGCTGCAGCGGCTTCTGCTGCCGATG
CCGCTTACCGGCAGGAGATGTACAAGCACCGCCAGAGCGTGGATTCCGTT
GAGTCGCAGAACCGCTTTAGTCCCGCCAGCCAGCCACCAGTGGTGCAGCC
CACCTCCTCGGCCCGCCAGTCGCCCATCGATGTCTGCCTGGAGGAGGATG
TTCACTCCGTGCACAGCCATCAGTCGTCCGCAAGCCTCCTGCATCCCATT
GCCATCCGAGCCACGCCAACCACTCCGACTAGCAGCAGCCCGCTGAGTTT
TGCGGCCAAGATGCAGAGCTTGTCGCCCGTTTCGGTTTGCTCCATTGGCG
GCGAAACCACCAGCGTTGTACCAGTGCATCCTCCCACCGTTTCCGCTCAA
GAAGGACCCATGGATCTGAGCATGAAGACCTCGCGGAGCTCCGTGCACAG
CTTCAACGACAGCGGCTCCGAGGATCAAGAAGTGGAGGTGGCTCCGCGCC
GGAAGTTCTACCAACTGGAGGCCGAGTGCCTGACCACCAGCAGCAGCAGT
TCCTCCCACTCCGCCGCCCACTCACCGAACACCACCACCGCCCATGCGGA
AGTCAAGCGGCAGAAGCTAGGTGGTGCAGAGGCCACCCACTTCGGTGGCT
TCGCGGTGGCCCACAATGCGGCTAGTGCCATGAGGGGAATATTCGTGTGT
GTCGCAAGCTTTCTAGACCAT
BO01127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kni-RB | 1305 | CG4717-PB | 16..1302 | 17..1303 | 6435 | 100 | Plus |
kni-RA | 1290 | CG4717-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
knrl-RB | 1944 | CG4761-PB | 28..308 | 17..297 | 730 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kni-RB | 1911 | CG4717-RB | 116..1402 | 17..1303 | 6435 | 100 | Plus |
kni-RA | 2100 | CG4717-RA | 305..1591 | 17..1303 | 6435 | 100 | Plus |
knrl-RB | 2925 | CG4761-RB | 992..1272 | 17..297 | 730 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20692839..20694049 | 1303..93 | 6055 | 100 | Minus |
3L | 28110227 | 3L | 20599778..20599982 | 297..93 | 515 | 83.4 | Minus |
3L | 28110227 | 3L | 20694263..20694340 | 94..17 | 390 | 100 | Minus |
3L | 28110227 | 3L | 21816347..21816480 | 164..297 | 355 | 84.3 | Plus |
3L | 28110227 | 3L | 20602193..20602270 | 94..17 | 225 | 85.9 | Minus |
3L | 28110227 | 3L | 21814779..21814856 | 17..94 | 195 | 83.3 | Plus |
Blast to na_te.dros performed 2014-11-27 07:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2443..2519 | 113..192 | 150 | 67.5 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 596..728 | 523..650 | 113 | 60.6 | Plus |
BO01127.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:55 Download gff for
BO01127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 1..1290 | 17..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:43 Download gff for
BO01127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 290..1580 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:23:12 Download gff for
BO01127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 305..1591 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:55 Download gff for
BO01127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 290..1580 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:18 Download gff for
BO01127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 305..1591 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:18 Download gff for
BO01127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20692837..20694047 | 95..1305 | 99 | <- | Minus |
3L | 20694263..20694340 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:23:12 Download gff for
BO01127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20685937..20687147 | 95..1305 | 99 | <- | Minus |
arm_3L | 20687363..20687440 | 17..94 | 100 | | Minus |
BO01127.pep Sequence
Translation from 16 to 1321
> BO01127.pep
MNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNISTISECKNEGKCII
DKKNRTTCKACRLRKCYNVGMSKGGSRYGRRSNWFKIHCLLQEHEQAAAA
AGKAPPLAGGVSVGGAPSASSPVGSPHTPGFGDMAAHLHHHHQQQQQQQV
PRHPHMPLLGYPSYLSDPSAALPFFSMMGGVPHQSPFQLPPHLLFPGYHA
SAAAAAASAADAAYRQEMYKHRQSVDSVESQNRFSPASQPPVVQPTSSAR
QSPIDVCLEEDVHSVHSHQSSASLLHPIAIRATPTTPTSSSPLSFAAKMQ
SLSPVSVCSIGGETTSVVPVHPPTVSAQEGPMDLSMKTSRSSVHSFNDSG
SEDQEVEVAPRRKFYQLEAECLTTSSSSSSHSAAHSPNTTTAHAEVKRQK
LGGAEATHFGGFAVAHNAASAMRGIFVCVASFLDH
BO01127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kni-PB | 434 | CG4717-PB | 6..434 | 1..429 | 2276 | 100 | Plus |
kni-PA | 429 | CG4717-PA | 1..429 | 1..429 | 2276 | 100 | Plus |
knrl-PB | 647 | CG4761-PB | 10..128 | 1..116 | 503 | 78.2 | Plus |
knrl-PA | 647 | CG4761-PA | 10..128 | 1..116 | 503 | 78.2 | Plus |
eg-PA | 373 | CG7383-PA | 1..118 | 1..120 | 470 | 71.7 | Plus |