Clone BO01141 Report

Search the DGRC for BO01141

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptGdi-RA
Protein status:BO01141.pep:
Sequenced Size:1363

Clone Sequence Records

BO01141.3prime Sequence

774 bp (769 high quality bases) assembled on 2005-11-30

> BO01141.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTCGTCACCCAACTCGTGCTTGATCT
TGGAGAAGTCGAACGTCTCGCCAGTGCCCCGCTTGAATATGTTCAACACA
TCCAGGCAAGTAGTCTCAAAGTGCGTGGTCGCATCGTAAGACTCCGAAAT
AAAGATTTGAGACTCGGATCCATCATCGATCGGCTCCAAATAGTCCGAAA
TGGTTACAAACTTTTGTGCGATCGGCTCCAGCAAGTCCAAGCCAGGCTTG
ATCTCCACCTCCGGGTTCTCGGTCTCAACGGTGGTCGAGACCATGCCCAC
GAACCAACCCTTGGCGGCCACCTGATGAGTGGAGCTCACAAGCGACACAT
AGATGTCCGACTTGCGGCCGACCTGCTTTTGTGGAATGATAATCTGCGTG
GAGAGACCATCCTTGGTGCTGGCCACCGGATGGTCCAGAATGCAAATGCA
GCGAATCACCTTGCCACGCTTGCGCACCTTCTCGGGCACGTAGCTGGGAT
CGCAGTAGACCTGCTTGCACTTGGCGACCTCTTCGCCGGAGCGCACTCCC
ACCACCTTGCCGCCCTCGCCGAGGACAATCTCGTCGATGGGCTTGTCAAG
CATGTAGGTGCCGCCGTAGATGGCCGACAGACGTGCGAATCCCTGGGGCA
GCTCACCCAGGCCGTACATGGGATAAAGGTAGGGCGACTTGCCGTAACGC
GCCAGCGAATCGGAGTAGAGCTTAATCCGCCGGATGGTGTTCACGGCCGG
CTCGTTCAGATACTCATCGTCGCG

BO01141.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4422-PA 1332 Gdi-RA 574..1329 774..19 3780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-RC 2501 CG4422-RC 835..1590 774..19 3780 100 Minus
Gdi-RB 2421 CG4422-RB 755..1510 774..19 3780 100 Minus
Gdi-RA 1661 CG4422-RA 755..1510 774..19 3780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9492087..9492547 19..479 2305 100 Plus
2L 23513712 2L 9492625..9492924 475..774 1500 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:06:37 has no hits.

BO01141.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:10 Download gff for BO01141.3prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-PA 574..1332 15..774 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:49 Download gff for BO01141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4422-PA 574..1332 15..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:42:55 Download gff for BO01141.3prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 755..1513 15..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:19 Download gff for BO01141.3prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 755..1513 15..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:19 Download gff for BO01141.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9492083..9492545 15..477 99 <- Plus
2L 9492628..9492924 478..774 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:42:55 Download gff for BO01141.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9492083..9492545 15..477 99 <- Plus
arm_2L 9492628..9492924 478..774 100   Plus

BO01141.5prime Sequence

809 bp (746 high quality bases) assembled on 2005-11-30

> BO01141.5prime
GAAGTTATCAGTCGACATGAATGAGGAATACGATGCGATTGTGCTAGGAA
CGGGCCTCAAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAG
AAGGTTTTGCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTC
GATAACGCCGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCG
GCGAACGATTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAG
TTCCTGATGGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGT
CACCCGCTATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGG
GCGGCAAGATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCC
GATCTCATGGGTATGTTCGAGAAGCGTCGCTTCCGGAACTTCCTCATCTA
CGTGCAGGATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACC
CCACCAAGGCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAG
AACACGCAGGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGA
GTATCTGAACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACT
CCGATTCGCTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTAC
GGCCTGNGTGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGG
CGGCACCTACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGG
GCGGCAAAG

BO01141.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4422-PA 1332 Gdi-RA 1..791 17..807 3936 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-RC 2501 CG4422-RC 262..1052 17..807 3944 99.9 Plus
Gdi-RB 2421 CG4422-RB 182..972 17..807 3944 99.9 Plus
Gdi-RA 1661 CG4422-RA 182..972 17..807 3944 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9494220..9494615 412..17 1980 100 Minus
2L 23513712 2L 9492707..9493104 807..410 1979 99.7 Minus
Blast to na_te.dros performed on 2015-02-04 18:47:16 has no hits.

BO01141.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:11 Download gff for BO01141.5prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:50 Download gff for BO01141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4422-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:28 Download gff for BO01141.5prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 182..973 17..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:27 Download gff for BO01141.5prime
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 182..973 17..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:27 Download gff for BO01141.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9492705..9493103 411..809 99 <- Minus
2L 9494222..9494615 17..410 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:28 Download gff for BO01141.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9492705..9493103 411..809 99 <- Minus
arm_2L 9494222..9494615 17..410 100   Minus

BO01141.complete Sequence

1363 bp (1363 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629434

> BO01141.complete
GAAGTTATCAGTCGACATGAATGAGGAATACGATGCGATTGTGCTAGGAA
CGGGCCTCAAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAG
AAGGTTTTGCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTC
GATAACGCCGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCG
GCGAACGATTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAG
TTCCTGATGGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGT
CACCCGCTATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGG
GCGGCAAGATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCC
GATCTCATGGGTATGTTCGAGAAGCGTCGCTTCCGGAACTTCCTCATCTA
CGTGCAGGATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACC
CCACCAAGGCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAG
AACACGCAGGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGA
GTATCTGAACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACT
CCGATTCGCTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTAC
GGCCTGGGTGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGG
CGGCACCTACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGG
GCGGCAAGGTGGTGGGAGTGCGCTCCGGCGAAGAGGTCGCCAAGTGCAAG
CAGGTCTACTGCGATCCCAGCTACGTGCCCGAGAAGGTGCGCAAGCGTGG
CAAGGTGATTCGCTGCATTTGCATTCTGGACCATCCGGTGGCCAGCACCA
AGGATGGTCTCTCCACGCAGATTATCATTCCACAAAAGCAGGTCGGCCGC
AAGTCGGACATCTATGTGTCGCTTGTGAGCTCCACTCATCAGGTGGCCGC
CAAGGGTTGGTTCGTGGGCATGGTCTCGACCACCGTTGAGACCGAGAACC
CGGAGGTGGAGATCAAGCCTGGCTTGGACTTGCTGGAGCCGATCGCACAA
AAGTTTGTAACCATTTCGGACTATTTGGAGCCGATCGATGATGGATCCGA
GTCTCAAATCTTTATTTCGGAGTCTTACGATGCGACCACGCACTTTGAGA
CTACTTGCCTGGATGTGTTGAACATATTCAAGCGGGGCACTGGCGAGACG
TTCGACTTCTCCAAGATCAAGCACGAGTTGGGTGACGAGGAGCAGGCAAG
CTTTCTAGACCAT

BO01141.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-RC 1332 CG4422-PC 1..1329 17..1345 6645 100 Plus
Gdi-RB 1332 CG4422-PB 1..1329 17..1345 6645 100 Plus
Gdi-RA 1332 CG4422-PA 1..1329 17..1345 6645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-RC 2501 CG4422-RC 262..1590 17..1345 6645 100 Plus
Gdi-RB 2421 CG4422-RB 182..1510 17..1345 6645 100 Plus
Gdi-RA 1661 CG4422-RA 182..1510 17..1345 6645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9492625..9493104 889..410 2400 100 Minus
2L 23513712 2L 9492087..9492547 1345..885 2305 100 Minus
2L 23513712 2L 9494220..9494615 412..17 1980 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:46:57 has no hits.

BO01141.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:46 Download gff for BO01141.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 1..1332 17..1349 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:36 Download gff for BO01141.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 313..1644 17..1349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:41 Download gff for BO01141.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 182..1510 17..1347 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:46 Download gff for BO01141.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 313..1644 17..1349 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:31 Download gff for BO01141.complete
Subject Subject Range Query Range Percent Splice Strand
Gdi-RA 182..1510 17..1347 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:31 Download gff for BO01141.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9494222..9494615 17..410 100   Minus
2L 9492085..9492545 887..1347 99 <- Minus
2L 9492628..9493103 411..886 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:41 Download gff for BO01141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9492085..9492545 887..1347 99 <- Minus
arm_2L 9492628..9493103 411..886 100 <- Minus
arm_2L 9494222..9494615 17..410 100   Minus

BO01141.pep Sequence

Translation from 16 to 1363

> BO01141.pep
MNEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLE
ELFQRYGLEPPGERFGRGRDWNVDLIPKFLMANGQLVKLLIHTGVTRYLE
FKSIEGSYVYKGGKIAKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFR
EDDPKTWKDFDPTKANMQGLYDKFGLDKNTQDFTGHALALFRDDEYLNEP
AVNTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYML
DKPIDEIVLGEGGKVVGVRSGEEVAKCKQVYCDPSYVPEKVRKRGKVIRC
ICILDHPVASTKDGLSTQIIIPQKQVGRKSDIYVSLVSSTHQVAAKGWFV
GMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFI
SESYDATTHFETTCLDVLNIFKRGTGETFDFSKIKHELGDEEQASFLDH

BO01141.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
Gdi-PC 443 CG4422-PC 1..443 1..443 2318 100 Plus
Gdi-PB 443 CG4422-PB 1..443 1..443 2318 100 Plus
Gdi-PA 443 CG4422-PA 1..443 1..443 2318 100 Plus
Rep-PA 511 CG8432-PA 7..396 3..366 351 26.1 Plus