Clone Sequence Records
BO01141.3prime Sequence
774 bp (769 high quality bases) assembled on 2005-11-30
> BO01141.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCTCGTCACCCAACTCGTGCTTGATCT
TGGAGAAGTCGAACGTCTCGCCAGTGCCCCGCTTGAATATGTTCAACACA
TCCAGGCAAGTAGTCTCAAAGTGCGTGGTCGCATCGTAAGACTCCGAAAT
AAAGATTTGAGACTCGGATCCATCATCGATCGGCTCCAAATAGTCCGAAA
TGGTTACAAACTTTTGTGCGATCGGCTCCAGCAAGTCCAAGCCAGGCTTG
ATCTCCACCTCCGGGTTCTCGGTCTCAACGGTGGTCGAGACCATGCCCAC
GAACCAACCCTTGGCGGCCACCTGATGAGTGGAGCTCACAAGCGACACAT
AGATGTCCGACTTGCGGCCGACCTGCTTTTGTGGAATGATAATCTGCGTG
GAGAGACCATCCTTGGTGCTGGCCACCGGATGGTCCAGAATGCAAATGCA
GCGAATCACCTTGCCACGCTTGCGCACCTTCTCGGGCACGTAGCTGGGAT
CGCAGTAGACCTGCTTGCACTTGGCGACCTCTTCGCCGGAGCGCACTCCC
ACCACCTTGCCGCCCTCGCCGAGGACAATCTCGTCGATGGGCTTGTCAAG
CATGTAGGTGCCGCCGTAGATGGCCGACAGACGTGCGAATCCCTGGGGCA
GCTCACCCAGGCCGTACATGGGATAAAGGTAGGGCGACTTGCCGTAACGC
GCCAGCGAATCGGAGTAGAGCTTAATCCGCCGGATGGTGTTCACGGCCGG
CTCGTTCAGATACTCATCGTCGCG
BO01141.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4422-PA | 1332 | Gdi-RA | 574..1329 | 774..19 | 3780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdi-RC | 2501 | CG4422-RC | 835..1590 | 774..19 | 3780 | 100 | Minus |
Gdi-RB | 2421 | CG4422-RB | 755..1510 | 774..19 | 3780 | 100 | Minus |
Gdi-RA | 1661 | CG4422-RA | 755..1510 | 774..19 | 3780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9492087..9492547 | 19..479 | 2305 | 100 | Plus |
2L | 23513712 | 2L | 9492625..9492924 | 475..774 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:06:37 has no hits.
BO01141.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:10 Download gff for
BO01141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-PA | 574..1332 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:49 Download gff for
BO01141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4422-PA | 574..1332 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:42:55 Download gff for
BO01141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 755..1513 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:19 Download gff for
BO01141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 755..1513 | 15..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:19 Download gff for
BO01141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9492083..9492545 | 15..477 | 99 | <- | Plus |
2L | 9492628..9492924 | 478..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:42:55 Download gff for
BO01141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9492083..9492545 | 15..477 | 99 | <- | Plus |
arm_2L | 9492628..9492924 | 478..774 | 100 | | Plus |
BO01141.5prime Sequence
809 bp (746 high quality bases) assembled on 2005-11-30
> BO01141.5prime
GAAGTTATCAGTCGACATGAATGAGGAATACGATGCGATTGTGCTAGGAA
CGGGCCTCAAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAG
AAGGTTTTGCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTC
GATAACGCCGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCG
GCGAACGATTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAG
TTCCTGATGGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGT
CACCCGCTATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGG
GCGGCAAGATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCC
GATCTCATGGGTATGTTCGAGAAGCGTCGCTTCCGGAACTTCCTCATCTA
CGTGCAGGATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACC
CCACCAAGGCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAG
AACACGCAGGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGA
GTATCTGAACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACT
CCGATTCGCTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTAC
GGCCTGNGTGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGG
CGGCACCTACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGG
GCGGCAAAG
BO01141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4422-PA | 1332 | Gdi-RA | 1..791 | 17..807 | 3936 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdi-RC | 2501 | CG4422-RC | 262..1052 | 17..807 | 3944 | 99.9 | Plus |
Gdi-RB | 2421 | CG4422-RB | 182..972 | 17..807 | 3944 | 99.9 | Plus |
Gdi-RA | 1661 | CG4422-RA | 182..972 | 17..807 | 3944 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9494220..9494615 | 412..17 | 1980 | 100 | Minus |
2L | 23513712 | 2L | 9492707..9493104 | 807..410 | 1979 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 18:47:16 has no hits.
BO01141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:11 Download gff for
BO01141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:18:50 Download gff for
BO01141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4422-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:28 Download gff for
BO01141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 182..973 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:27 Download gff for
BO01141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 182..973 | 17..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:27 Download gff for
BO01141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9492705..9493103 | 411..809 | 99 | <- | Minus |
2L | 9494222..9494615 | 17..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:28 Download gff for
BO01141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9492705..9493103 | 411..809 | 99 | <- | Minus |
arm_2L | 9494222..9494615 | 17..410 | 100 | | Minus |
BO01141.complete Sequence
1363 bp (1363 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629434
> BO01141.complete
GAAGTTATCAGTCGACATGAATGAGGAATACGATGCGATTGTGCTAGGAA
CGGGCCTCAAGGAGTGCATCCTCAGCGGGATGCTGTCCGTGTCCGGCAAG
AAGGTTTTGCATATTGATCGAAACAAGTACTACGGCGGCGAGTCCGCCTC
GATAACGCCGCTGGAGGAGCTCTTCCAGCGCTACGGACTGGAGCCGCCCG
GCGAACGATTTGGGCGTGGCCGCGACTGGAACGTGGACCTGATCCCCAAG
TTCCTGATGGCCAATGGCCAGCTGGTCAAGCTGCTGATCCACACGGGCGT
CACCCGCTATCTGGAGTTCAAGTCCATCGAGGGCAGCTACGTTTACAAGG
GCGGCAAGATAGCCAAGGTGCCGGTGGACCAAAAGGAGGCCCTGGCATCC
GATCTCATGGGTATGTTCGAGAAGCGTCGCTTCCGGAACTTCCTCATCTA
CGTGCAGGATTTCCGAGAAGATGACCCCAAGACCTGGAAGGACTTTGACC
CCACCAAGGCCAACATGCAGGGTCTGTACGACAAGTTCGGACTGGACAAG
AACACGCAGGACTTCACCGGCCACGCCCTGGCCCTTTTCCGCGACGATGA
GTATCTGAACGAGCCGGCCGTGAACACCATCCGGCGGATTAAGCTCTACT
CCGATTCGCTGGCGCGTTACGGCAAGTCGCCCTACCTTTATCCCATGTAC
GGCCTGGGTGAGCTGCCCCAGGGATTCGCACGTCTGTCGGCCATCTACGG
CGGCACCTACATGCTTGACAAGCCCATCGACGAGATTGTCCTCGGCGAGG
GCGGCAAGGTGGTGGGAGTGCGCTCCGGCGAAGAGGTCGCCAAGTGCAAG
CAGGTCTACTGCGATCCCAGCTACGTGCCCGAGAAGGTGCGCAAGCGTGG
CAAGGTGATTCGCTGCATTTGCATTCTGGACCATCCGGTGGCCAGCACCA
AGGATGGTCTCTCCACGCAGATTATCATTCCACAAAAGCAGGTCGGCCGC
AAGTCGGACATCTATGTGTCGCTTGTGAGCTCCACTCATCAGGTGGCCGC
CAAGGGTTGGTTCGTGGGCATGGTCTCGACCACCGTTGAGACCGAGAACC
CGGAGGTGGAGATCAAGCCTGGCTTGGACTTGCTGGAGCCGATCGCACAA
AAGTTTGTAACCATTTCGGACTATTTGGAGCCGATCGATGATGGATCCGA
GTCTCAAATCTTTATTTCGGAGTCTTACGATGCGACCACGCACTTTGAGA
CTACTTGCCTGGATGTGTTGAACATATTCAAGCGGGGCACTGGCGAGACG
TTCGACTTCTCCAAGATCAAGCACGAGTTGGGTGACGAGGAGCAGGCAAG
CTTTCTAGACCAT
BO01141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdi-RC | 1332 | CG4422-PC | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Gdi-RB | 1332 | CG4422-PB | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Gdi-RA | 1332 | CG4422-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdi-RC | 2501 | CG4422-RC | 262..1590 | 17..1345 | 6645 | 100 | Plus |
Gdi-RB | 2421 | CG4422-RB | 182..1510 | 17..1345 | 6645 | 100 | Plus |
Gdi-RA | 1661 | CG4422-RA | 182..1510 | 17..1345 | 6645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9492625..9493104 | 889..410 | 2400 | 100 | Minus |
2L | 23513712 | 2L | 9492087..9492547 | 1345..885 | 2305 | 100 | Minus |
2L | 23513712 | 2L | 9494220..9494615 | 412..17 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:57 has no hits.
BO01141.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:46 Download gff for
BO01141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 1..1332 | 17..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:36 Download gff for
BO01141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 313..1644 | 17..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:41 Download gff for
BO01141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 182..1510 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:46 Download gff for
BO01141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 313..1644 | 17..1349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:31 Download gff for
BO01141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gdi-RA | 182..1510 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:31 Download gff for
BO01141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9494222..9494615 | 17..410 | 100 | | Minus |
2L | 9492085..9492545 | 887..1347 | 99 | <- | Minus |
2L | 9492628..9493103 | 411..886 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:41 Download gff for
BO01141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9492085..9492545 | 887..1347 | 99 | <- | Minus |
arm_2L | 9492628..9493103 | 411..886 | 100 | <- | Minus |
arm_2L | 9494222..9494615 | 17..410 | 100 | | Minus |
BO01141.pep Sequence
Translation from 16 to 1363
> BO01141.pep
MNEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLE
ELFQRYGLEPPGERFGRGRDWNVDLIPKFLMANGQLVKLLIHTGVTRYLE
FKSIEGSYVYKGGKIAKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFR
EDDPKTWKDFDPTKANMQGLYDKFGLDKNTQDFTGHALALFRDDEYLNEP
AVNTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYML
DKPIDEIVLGEGGKVVGVRSGEEVAKCKQVYCDPSYVPEKVRKRGKVIRC
ICILDHPVASTKDGLSTQIIIPQKQVGRKSDIYVSLVSSTHQVAAKGWFV
GMVSTTVETENPEVEIKPGLDLLEPIAQKFVTISDYLEPIDDGSESQIFI
SESYDATTHFETTCLDVLNIFKRGTGETFDFSKIKHELGDEEQASFLDH
BO01141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gdi-PC | 443 | CG4422-PC | 1..443 | 1..443 | 2318 | 100 | Plus |
Gdi-PB | 443 | CG4422-PB | 1..443 | 1..443 | 2318 | 100 | Plus |
Gdi-PA | 443 | CG4422-PA | 1..443 | 1..443 | 2318 | 100 | Plus |
Rep-PA | 511 | CG8432-PA | 7..396 | 3..366 | 351 | 26.1 | Plus |