Clone Sequence Records
BO01146.3prime Sequence
806 bp (771 high quality bases) assembled on 2005-11-30
> BO01146.3prime
ATGGTCTAGAAAGCTTGCATCAATGTCGTCGTCCAGCTCGTCATCATCCA
TCTCCAGCTTGAACTCGCCATCGGTGGTGTGTTGTGCCGAGTGTTGTGCA
AAGCCCTGGGACTCATTGGCCGACTCCAGGTACCCGTTGAACTCATTGTC
CTCGTCATCCGATTCGTACATATTTTCGCCAGTCTTGCCGGTGCCGTAGG
CTTCTACGTATTTGGCAAGGTTTGGAGGCACCCACGACTTGACTCGTTCA
ATGTTCTCCGGCGTGCATTCGCCCTTATCCAGTCCCAATAGGAATCCCAT
ACGCTTGAGCACCTCAATGTCATCGTGCATTTCGAAGGTTTTGTCGAACT
TGAATATGTATTCGGACTTGTCGTTGGTCACACTGCAGTTGATTTTCGTG
GACTTGTGCGTGTTCACGATGATGAACGGTAGCTGGATCGAGGCATTCGG
GGAAGGCACCACGCCTTGGCTCTCGTTTCGCTTGTTCCGCTCGACCAATC
CCTTGAACGCCACATGCTGCATGATCATTTCGCGCAACATTTCGTTTTTC
TGTTTTATTCGCTCGCGGCGCTGACAGTTTTCCTCTTCCAGGGCCAGAAA
TGTCTCTGTCGAATTTGCGGGCAGTCCTATCCAGCGAATCTCCTTCTTGT
CCTTGGAAATAACATTGATTGCCATCAGTACGTTGAGCGCATCGTAGACA
CGACGTCGGATATTCTTTTGATCACAGTTGTTGTCGTACGCATTGTTCTT
CATCTCCTCGCTGACCAGGTCGTCGGCCACCTCATTGTAGGTGGTCTTGC
CCTTCT
BO01146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4654-PA | 1338 | Dp-RA | 548..1335 | 806..19 | 3940 | 100 | Minus |
| CG4654-PB | 1326 | Dp-RB | 536..1323 | 806..19 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RC | 1913 | CG4654-RC | 548..1335 | 806..19 | 3940 | 100 | Minus |
| Dp-RB | 2448 | CG4654-RB | 626..1413 | 806..19 | 3940 | 100 | Minus |
| Dp-RA | 2526 | CG4654-RA | 1161..1948 | 806..19 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226402..13226641 | 605..366 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 13226133..13226335 | 806..604 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 13226984..13227167 | 202..19 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 13226845..13226929 | 285..201 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 13226700..13226783 | 367..284 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:42:29 has no hits.
BO01146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:24:20 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:02 Download gff for
BO01146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4654-PB | 536..1326 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:31:57 Download gff for
BO01146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 1161..1954 | 12..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:25 Download gff for
BO01146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 1161..1954 | 12..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:25 Download gff for
BO01146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13226404..13226639 | 368..603 | 100 | -> | Minus |
| 2R | 13226700..13226782 | 285..367 | 100 | -> | Minus |
| 2R | 13226846..13226929 | 201..284 | 100 | -> | Minus |
| 2R | 13226986..13227173 | 12..200 | 98 | | Minus |
| 2R | 13226133..13226335 | 604..806 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:31:57 Download gff for
BO01146.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9113638..9113840 | 604..806 | 100 | -> | Minus |
| arm_2R | 9113909..9114144 | 368..603 | 100 | -> | Minus |
| arm_2R | 9114205..9114287 | 285..367 | 100 | -> | Minus |
| arm_2R | 9114351..9114434 | 201..284 | 100 | -> | Minus |
| arm_2R | 9114491..9114678 | 12..200 | 98 | | Minus |
BO01146.5prime Sequence
882 bp (782 high quality bases) assembled on 2005-11-30
> BO01146.5prime
GAAGTTATCAGTCGACATGGCGCATTCGACGGGCGGTACGGTGAAGACCG
ATGAGGTGAACTTCTTCTTCCGGAACGAGCACGGACAAATATCCAAAATG
CTGAAGCCGGCCCAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGC
GGTGGTCTACGCCACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCG
GCATCGGCAACGTGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAA
GGGCAGTTTATACGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGA
AGCAGGTACCACCTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTG
GCAGTGGTCATTACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTT
ACACCAAATCCCATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAA
CTCGTTGCACTCCATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCA
AGCCGGACAAGGCAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGC
GAAAAGGTGGAGGAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGA
CCTGGTCAGCGAGGAGATGAAGAACAATGCGTACGACAACAACTGTGATC
AAAAGAATATCCGACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCA
ATCAATGTTATTTCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCC
CGCAAATTCGACAGAGACATTTCTGGCCCTGGAAGAGGAAAACTGTCAGC
GCCGCGAGCGAATAAAACAGAAAAAACGAATGTTGCGCGAAATGATCATG
CAGCATGTGGCGTTCAAGGGATTGGTCGAGCG
BO01146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4654-PA | 1338 | Dp-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
| CG4654-PB | 1326 | Dp-RB | 55..797 | 83..825 | 3715 | 100 | Plus |
| CG4654-PA | 1338 | Dp-RA | 813..866 | 829..882 | 270 | 100 | Plus |
| CG4654-PB | 1326 | Dp-RB | 801..854 | 829..882 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RA | 2526 | CG4654-RA | 614..1479 | 17..882 | 4285 | 99.8 | Plus |
| Dp-RB | 2448 | CG4654-RB | 145..944 | 83..882 | 3955 | 99.8 | Plus |
| Dp-RC | 1913 | CG4654-RC | 70..866 | 83..882 | 3900 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226002..13226335 | 433..766 | 1670 | 100 | Plus |
| 2R | 25286936 | 2R | 13225466..13225625 | 83..242 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 13225807..13225938 | 301..432 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 13226402..13226519 | 765..882 | 545 | 97.5 | Plus |
| 2R | 25286936 | 2R | 13223046..13223113 | 17..84 | 340 | 100 | Plus |
| 2R | 25286936 | 2R | 13225690..13225751 | 241..302 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:21:34 has no hits.
BO01146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:24:21 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:03 Download gff for
BO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4654-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:33:22 Download gff for
BO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 614..1479 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:19 Download gff for
BO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 614..1479 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:19 Download gff for
BO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13223046..13223112 | 17..83 | 100 | -> | Plus |
| 2R | 13225467..13225624 | 84..241 | 100 | -> | Plus |
| 2R | 13225691..13225751 | 242..302 | 100 | -> | Plus |
| 2R | 13225809..13225938 | 303..432 | 100 | -> | Plus |
| 2R | 13226002..13226335 | 433..766 | 100 | -> | Plus |
| 2R | 13226404..13226519 | 767..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:33:22 Download gff for
BO01146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9110551..9110617 | 17..83 | 100 | -> | Plus |
| arm_2R | 9112972..9113129 | 84..241 | 100 | -> | Plus |
| arm_2R | 9113196..9113256 | 242..302 | 100 | -> | Plus |
| arm_2R | 9113314..9113443 | 303..432 | 100 | -> | Plus |
| arm_2R | 9113507..9113840 | 433..766 | 100 | -> | Plus |
| arm_2R | 9113909..9114024 | 767..882 | 98 | | Plus |
BO01146.complete Sequence
1369 bp (1369 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629435
> BO01146.complete
GAAGTTATCAGTCGACATGGCGCATTCGACGGGCGGTACGGTGAAGACCG
ATGAGGTGAACTTCTTCTTCCGGAACGAGCACGGACAAATATCCAAAATG
CTGAAGCCGGCCCAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGC
GGTGGTCTACGCCACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCG
GCATCGGCAACGTGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAA
GGGCAGTTTATACGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGA
AGCAGGTACCACCTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTG
GCAGTGGTCATTACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTT
ACACCAAATCCCATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAA
CTCGTTGCACTCCATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCA
AGCCGGACAAGGCAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGC
GAAAAGGTGGAGGAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGA
CCTGGTCAGCGAGGAGATGAAGAACAATGCGTACGACAACAACTGTGATC
AAAAGAATATCCGACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCA
ATCAATGTTATTTCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCC
CGCAAATTCGACAGAGACATTTCTGGCCCTGGAAGAGGAAAACTGTCAGC
GCCGCGAGCGAATAAAACAGAAAAACGAAATGTTGCGCGAAATGATCATG
CAGCATGTGGCGTTCAAGGGATTGGTCGAGCGGAACAAGCGAAACGAGAG
CCAAGGCGTGGTGCCTTCCCCGAATGCCTCGATCCAGCTACCGTTCATCA
TCGTGAACACGCACAAGTCCACGAAAATCAACTGCAGTGTGACCAACGAC
AAGTCCGAATACATATTCAAGTTCGACAAAACCTTCGAAATGCACGATGA
CATTGAGGTGCTCAAGCGTATGGGATTCCTATTGGGACTGGATAAGGGCG
AATGCACGCCGGAGAACATTGAACGAGTCAAGTCGTGGGTGCCTCCAAAC
CTTGCCAAATACGTAGAAGCCTACGGCACCGGCAAGACTGGCGAAAATAT
GTACGAATCGGATGACGAGGACAATGAGTTCAACGGGTACCTGGAGTCGG
CCAATGAGTCCCAGGGCTTTGCACAACACTCGGCACAACACACCACCGAT
GGCGAGTTCAAGCTGGAGATGGATGATGACGAGCTGGACGACGACATTGA
TGCAAGCTTTCTAGACCAT
BO01146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RA | 1338 | CG4654-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
| Dp-RB | 1326 | CG4654-PB | 55..1323 | 83..1351 | 6345 | 100 | Plus |
| Dp-RC | 1254 | CG4654-PC | 1..1251 | 98..1351 | 6190 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RA | 2526 | CG4654-RA | 614..1948 | 17..1351 | 6675 | 100 | Plus |
| Dp-RB | 2448 | CG4654-RB | 145..1413 | 83..1351 | 6345 | 100 | Plus |
| Dp-RC | 1913 | CG4654-RC | 70..1335 | 83..1351 | 6265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226002..13226335 | 433..766 | 1670 | 100 | Plus |
| 2R | 25286936 | 2R | 13226402..13226641 | 765..1004 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 13226984..13227167 | 1168..1351 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 13225466..13225625 | 83..242 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 13225807..13225938 | 301..432 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 13226845..13226929 | 1085..1169 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 13226700..13226783 | 1003..1086 | 420 | 100 | Plus |
| 2R | 25286936 | 2R | 13223046..13223113 | 17..84 | 340 | 100 | Plus |
| 2R | 25286936 | 2R | 13225690..13225751 | 241..302 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:21:44 has no hits.
BO01146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:47 Download gff for
BO01146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 1..1338 | 17..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:37 Download gff for
BO01146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 650..1990 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:28 Download gff for
BO01146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 614..1948 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:48 Download gff for
BO01146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 650..1990 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:43 Download gff for
BO01146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RA | 614..1948 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:43 Download gff for
BO01146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13223046..13223112 | 17..83 | 100 | -> | Plus |
| 2R | 13225467..13225624 | 84..241 | 100 | -> | Plus |
| 2R | 13225691..13225751 | 242..302 | 100 | -> | Plus |
| 2R | 13225809..13225938 | 303..432 | 100 | -> | Plus |
| 2R | 13226002..13226335 | 433..766 | 100 | -> | Plus |
| 2R | 13226404..13226639 | 767..1002 | 100 | -> | Plus |
| 2R | 13226700..13226782 | 1003..1085 | 100 | -> | Plus |
| 2R | 13226846..13226929 | 1086..1169 | 100 | -> | Plus |
| 2R | 13226986..13227167 | 1170..1353 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:28 Download gff for
BO01146.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9110551..9110617 | 17..83 | 100 | -> | Plus |
| arm_2R | 9112972..9113129 | 84..241 | 100 | -> | Plus |
| arm_2R | 9113196..9113256 | 242..302 | 100 | -> | Plus |
| arm_2R | 9113314..9113443 | 303..432 | 100 | -> | Plus |
| arm_2R | 9113507..9113840 | 433..766 | 100 | -> | Plus |
| arm_2R | 9113909..9114144 | 767..1002 | 100 | -> | Plus |
| arm_2R | 9114205..9114287 | 1003..1085 | 100 | -> | Plus |
| arm_2R | 9114351..9114434 | 1086..1169 | 100 | -> | Plus |
| arm_2R | 9114491..9114672 | 1170..1353 | 98 | | Plus |
BO01146.pep Sequence
Translation from 16 to 1369
> BO01146.pep
MAHSTGGTVKTDEVNFFFRNEHGQISKMLKPAQNKSEMEGGKPVAVVYAT
GSSARNSGSASGIGNVGRMGAFSQMGSQGQFIRLQDNGLSIPKTEAGTTY
TTVSAQKTSGAGSGHYDLPLKGDRYVKFTPNPIKMKSKLHAIQSNSLHSM
SASSSSVQRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEE
MKNNAYDNNCDQKNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTE
TFLALEEENCQRRERIKQKNEMLREMIMQHVAFKGLVERNKRNESQGVVP
SPNASIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKTFEMHDDIEVLK
RMGFLLGLDKGECTPENIERVKSWVPPNLAKYVEAYGTGKTGENMYESDD
EDNEFNGYLESANESQGFAQHSAQHTTDGEFKLEMDDDELDDDIDASFLD
H
BO01146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-PA | 445 | CG4654-PA | 1..445 | 1..445 | 2315 | 100 | Plus |
| Dp-PB | 441 | CG4654-PB | 16..441 | 20..445 | 2199 | 99.5 | Plus |
| Dp-PC | 417 | CG4654-PC | 1..417 | 28..445 | 2155 | 99.8 | Plus |
