Clone Sequence Records
BO01151.3prime Sequence
840 bp (788 high quality bases) assembled on 2005-11-30
> BO01151.3prime
ATGGTCTAGAAAGCTTGCCTTTATTACCTGCTGCATTTCATCATTGCGCA
TGCTGCGCAGTCCCTGTTGCTCCTCGAGCTTGTTGCTCATCAGGCTCACC
CAATCACGAGCTTGTCTAAGCGATAGGGAGCTCTGAGATCGTTCGGGTAT
CCGACACGGGAACAGCATTTCGCGGGCTCCCACAACACAACCGCTGTCGA
GGACAAATACTCGCGGAAAGTCTACTACAAAGTCGCGGCTTCGATTAAGA
TCCGCAGATTCGTCCCGTGCCTCAACCAGTGCCAGTCCCTGCGGGGGATC
AGGCTGATATTCCAGAATACTTTCCTCGCTTCCTAAAAACACATATCCAT
AGAACTTCAGGACGTCGAGCTTACACATGGGACAGGTTCGATGCTCTATA
AGCCACGGATCTATGCAGTTTTTATGGAACTCGTGCTTGCACGGCAATAT
CCGTATGGTGTCCGTGGGCTTATAGGCTTCGATGCATATAGCACAGCAGT
CGCTATCCAAGTCCTTTTCATCGCTGAATTTTCCGGTTTTTGTTGGAATC
TTCATGATAGCCTTTTTGGTAACAGAGCAGAGATTGCGCGATTGTTGGTC
CTTCGCCTGCATGTAACGGAACCTCTGAATATAGTAGAAGATGAGCCAAA
CCAGAGAAATAATCATCAAAACAATAAATGAAATCGACACAAACAGCACT
GATGTTCTATTTAAGCTGCTAATGGTGCGAACACCTCGTCTTCCCTCGAT
GATCGAAATAGTTACATTATAGCCCTTATCAAGAGTCAAAGACAGGTCTT
GCCCAATGTTCTGATAAGTTATAAACGGCGGCTATGTTTC
BO01151.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2679-PB | 1386 | gol-RB | 578..1383 | 824..19 | 4030 | 100 | Minus |
| CG2679-PA | 861 | gol-RA | 53..537 | 824..340 | 2425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RB | 2583 | CG2679-RB | 1121..1941 | 840..19 | 4085 | 99.9 | Minus |
| gol-RD | 2520 | CG2679-RD | 1121..1932 | 840..28 | 4040 | 99.9 | Minus |
| gol-RE | 3725 | CG2679-RE | 1121..1620 | 840..340 | 2480 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25073269..25073590 | 19..340 | 1610 | 100 | Plus |
| 2R | 25286936 | 2R | 25075396..25075549 | 436..589 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 25077174..25077306 | 707..840 | 620 | 99.3 | Plus |
| 2R | 25286936 | 2R | 25075605..25075725 | 589..709 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 25075242..25075338 | 340..436 | 485 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2291..2352 | 653..592 | 112 | 64.5 | Minus |
BO01151.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:24 Download gff for
BO01151.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-PB | 563..1386 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:06 Download gff for
BO01151.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2679-PB | 563..1386 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:19 Download gff for
BO01151.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1121..1945 | 15..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:51 Download gff for
BO01151.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1121..1945 | 15..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:51 Download gff for
BO01151.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25073265..25073589 | 15..339 | 99 | <- | Plus |
| 2R | 25075242..25075338 | 340..436 | 100 | <- | Plus |
| 2R | 25075397..25075548 | 437..588 | 100 | <- | Plus |
| 2R | 25075605..25075722 | 589..706 | 100 | <- | Plus |
| 2R | 25077174..25077306 | 707..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:19 Download gff for
BO01151.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20960788..20961112 | 15..339 | 99 | <- | Plus |
| arm_2R | 20962765..20962861 | 340..436 | 100 | <- | Plus |
| arm_2R | 20962920..20963071 | 437..588 | 100 | <- | Plus |
| arm_2R | 20963128..20963245 | 589..706 | 100 | <- | Plus |
| arm_2R | 20964697..20964829 | 707..840 | 99 | | Plus |
BO01151.5prime Sequence
888 bp (738 high quality bases) assembled on 2005-11-30
> BO01151.5prime
GAAGTTATCAGTCGACATGTATATACGGAAAACGCTCCTACTGGCTTGCC
TTGTTTTGCTGTTCGGGGGACTCCCGCCTCTCACCTTCCCTGCAACGACC
ACTACCTTAGTGGCGGCCATGTCCATCGCAAATCAGGACTTGGAGCGCTA
CTTTCGACCAGGCAACGGCACTCACAGCTTCTCCGGCATGGAAGATCGTA
TTGCCGTGGACGTCTATAACTACGCCTTTCTTAACTGGTCATACGTAGAG
CACGGTAACATGCTGTGCAACATGGAATTCGCCCAAGAACAGGCCCGTTA
CGGAGAGGGCAAGGTGTTGAACGTAACGGGACGGTTAATTCACATCACCG
CCACGGACAACTTTAGTGACGATTACGCGTGCACGCCGTACATCCGAGGA
ACCTTGGGAGCACCCATACCAGATAAAGGGGAGACATGGATTGCATTGGT
GCGACGGGGCCGCTGCACCTTTGAGGAAAAAGTTAAACATGTCTACCAGC
AAAATGCTGCCGGTGTTATTATTTATAACGACAAGCAAGTAATGCAGCTG
GAGAAGATGCAGATCAAGGGCAAAACAAGAAACATAGCCGCCGTTATAAC
TTATCAGAACATTGGGCAAGACCTGTCTTTGACTCTTGATAAGGGCTATA
ATGTAACTATTTCGATCATCGAGGGAAGACGAGGTGTTCGCACCATTAGC
AGCTTAAATAGAACATCAGTGCTGTTTGTGTCGATTTCATTTATTGTTTT
GATGATTATTTCTCTGGTTTGGCTCATCTTCTACTATATTCAGAGGTTCC
GTTACATGCAGGCGAAAGACCAACAATCGCGCAATCTCTGCTCTTGTTAC
AAAAAGGCTATCATGAAGATTTCAACAAAAACCGGAAA
BO01151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2679-PB | 1386 | gol-RB | 1..828 | 17..844 | 4115 | 99.8 | Plus |
| CG2679-PA | 861 | gol-RA | 1..303 | 542..844 | 1490 | 99.6 | Plus |
| CG2679-PB | 1386 | gol-RB | 834..872 | 850..888 | 170 | 97.4 | Plus |
| CG2679-PA | 861 | gol-RA | 309..347 | 850..888 | 170 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RE | 3725 | CG2679-RE | 559..1430 | 17..888 | 4285 | 99.5 | Plus |
| gol-RD | 2520 | CG2679-RD | 559..1430 | 17..888 | 4285 | 99.5 | Plus |
| gol-RC | 3193 | CG2679-RC | 559..1430 | 17..888 | 4285 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25077369..25077931 | 579..17 | 2815 | 100 | Minus |
| 2R | 25286936 | 2R | 25077174..25077306 | 711..579 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 25075605..25075725 | 829..709 | 590 | 99.2 | Minus |
| 2R | 25286936 | 2R | 25075490..25075549 | 888..829 | 225 | 91.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:18:27 has no hits.
BO01151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:25 Download gff for
BO01151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-PB | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:09 Download gff for
BO01151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2679-PB | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:33:25 Download gff for
BO01151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RC | 555..1427 | 13..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:39:12 Download gff for
BO01151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RC | 555..1427 | 13..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:39:12 Download gff for
BO01151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25075493..25075548 | 830..885 | 94 | <- | Minus |
| 2R | 25075605..25075722 | 712..829 | 99 | <- | Minus |
| 2R | 25077174..25077306 | 579..711 | 100 | <- | Minus |
| 2R | 25077370..25077934 | 11..578 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:33:25 Download gff for
BO01151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20963016..20963071 | 830..885 | 94 | <- | Minus |
| arm_2R | 20963128..20963245 | 712..829 | 99 | <- | Minus |
| arm_2R | 20964697..20964829 | 579..711 | 100 | <- | Minus |
| arm_2R | 20964893..20965457 | 11..578 | 99 | <- | Minus |
BO01151.complete Sequence
1417 bp (1417 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629436
> BO01151.complete
GAAGTTATCAGTCGACATGTATATACGGAAAACGCTCCTACTGGCTTGCC
TTGTTTTGCTGTTCGGGGGACTCCCGCCTCTCACCTTCCCTGCAACGACC
ACTACCTTAGTGGCGGCCATGTCCATCGCAAATCAGGACTTGGAGCGCTA
CTTTCGACCAGGCAACGGCACTCACAGCTTCTCCGGCATGGAAGATCGTA
TTGCCGTGGACGTCTATAACTACGCCTTTCTTAACTGGTCATACGTAGAG
CACGGTAACATGCTGTGCAACATGGAATTCGCCCAAGAACAGGCCCGTTA
CGGAGAGGGCAAGGTGTTGAACGTAACGGGACGGTTAATTCACATCACCG
CCACGGACAACTTTAGTGACGATTACGCGTGCACGCCGTACATCCGAGGA
ACCTTGGGAGCACCCATACCAGATAAAGGGGAGACATGGATTGCATTGGT
GCGACGGGGCCGCTGCACCTTTGAGGAAAAAGTTAAACATGTCTACCAGC
AAAATGCTGCCGGTGTTATTATTTATAACGACAAGCAAGTAATGCAGCTG
GAGAAGATGCAGATCAAGGGCAAAACAAGAAACATAGCCGCCGTTATAAC
TTATCAGAACATTGGGCAAGACCTGTCTTTGACTCTTGATAAGGGCTATA
ATGTAACTATTTCGATCATCGAGGGAAGACGAGGTGTTCGCACCATTAGC
AGCTTAAATAGAACATCAGTGCTGTTTGTGTCGATTTCATTTATTGTTTT
GATGATTATTTCTCTGGTTTGGCTCATCTTCTACTATATTCAGAGGTTCC
GTTACATGCAGGCGAAGGACCAACAATCGCGCAATCTCTGCTCTGTTACC
AAAAAGGCTATCATGAAGATTCCAACAAAAACCGGAAAATTCAGCGATGA
AAAGGACTTGGATAGCGACTGCTGTGCTATATGCATCGAAGCCTATAAGC
CCACGGACACCATACGGATATTGCCGTGCAAGCACGAGTTCCATAAAAAC
TGCATAGATCCGTGGCTTATAGAGCATCGAACCTGTCCCATGTGTAAGCT
CGACGTCCTGAAGTTCTATGGATATGTGTTTTTAGGAAGCGAGGAAAGTA
TTCTGGAATATCAGCCTGATCCCCCGCAGGGACTGGCACTGGTTGAGGCA
CGGGACGAATCTGCGGATCTTAATCGAAGCCGCGACTTTGTAGTAGACTT
TCCGCGAGTATTTGTCCTCGACAGCGGTTGTGTTGTGGGAGCCCGCGAAA
TGCTGTTCCCGTGTCGGATACCCGAACGATCTCAGAGCTCCCTATCGCTT
AGACAAGCTCGTGATTGGGTGAGCCTGATGAGCAACAAGCTCGAGGAGCA
ACAGGGACTGCGCAGCATGCGCAATGATGAAATGCAGCAGGTAATAAAGG
CAAGCTTTCTAGACCAT
BO01151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RB | 1386 | CG2679-PB | 1..1383 | 17..1399 | 6915 | 100 | Plus |
| gol-RD | 1806 | CG2679-PD | 1..1374 | 17..1390 | 6870 | 100 | Plus |
| gol-RE | 1386 | CG2679-PE | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-RB | 2583 | CG2679-RB | 559..1941 | 17..1399 | 6915 | 100 | Plus |
| gol-RD | 2520 | CG2679-RD | 559..1932 | 17..1390 | 6870 | 100 | Plus |
| gol-RE | 3725 | CG2679-RE | 559..1620 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25077369..25077931 | 579..17 | 2815 | 100 | Minus |
| 2R | 25286936 | 2R | 25073269..25073590 | 1399..1078 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 25075396..25075549 | 982..829 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 25077174..25077306 | 711..579 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 25075605..25075725 | 829..709 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 25075242..25075338 | 1078..982 | 485 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2291..2352 | 765..826 | 112 | 64.5 | Plus |
BO01151.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:49 Download gff for
BO01151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 1..1386 | 17..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:39 Download gff for
BO01151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 528..1918 | 13..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:14 Download gff for
BO01151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 559..1941 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:49 Download gff for
BO01151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 528..1918 | 13..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:23 Download gff for
BO01151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gol-RB | 559..1941 | 17..1401 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:23 Download gff for
BO01151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25077174..25077306 | 579..711 | 100 | <- | Minus |
| 2R | 25073266..25073589 | 1079..1401 | 99 | <- | Minus |
| 2R | 25075242..25075338 | 982..1078 | 100 | <- | Minus |
| 2R | 25075397..25075548 | 830..981 | 100 | <- | Minus |
| 2R | 25075605..25075722 | 712..829 | 100 | <- | Minus |
| 2R | 25077370..25077931 | 17..578 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:14 Download gff for
BO01151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20964697..20964829 | 579..711 | 100 | <- | Minus |
| arm_2R | 20962920..20963071 | 830..981 | 100 | <- | Minus |
| arm_2R | 20963128..20963245 | 712..829 | 100 | <- | Minus |
| arm_2R | 20960789..20961112 | 1079..1401 | 99 | <- | Minus |
| arm_2R | 20962765..20962861 | 982..1078 | 100 | <- | Minus |
| arm_2R | 20964893..20965454 | 17..578 | 100 | | Minus |
BO01151.pep Sequence
Translation from 16 to 1417
> BO01151.pep
MYIRKTLLLACLVLLFGGLPPLTFPATTTTLVAAMSIANQDLERYFRPGN
GTHSFSGMEDRIAVDVYNYAFLNWSYVEHGNMLCNMEFAQEQARYGEGKV
LNVTGRLIHITATDNFSDDYACTPYIRGTLGAPIPDKGETWIALVRRGRC
TFEEKVKHVYQQNAAGVIIYNDKQVMQLEKMQIKGKTRNIAAVITYQNIG
QDLSLTLDKGYNVTISIIEGRRGVRTISSLNRTSVLFVSISFIVLMIISL
VWLIFYYIQRFRYMQAKDQQSRNLCSVTKKAIMKIPTKTGKFSDEKDLDS
DCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMCKLDVLKF
YGYVFLGSEESILEYQPDPPQGLALVEARDESADLNRSRDFVVDFPRVFV
LDSGCVVGAREMLFPCRIPERSQSSLSLRQARDWVSLMSNKLEEQQGLRS
MRNDEMQQVIKASFLDH
BO01151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gol-PB | 461 | CG2679-PB | 1..461 | 1..461 | 2413 | 100 | Plus |
| gol-PD | 601 | CG2679-PD | 1..458 | 1..458 | 2400 | 100 | Plus |
| gol-PE | 461 | CG2679-PE | 1..376 | 1..381 | 1875 | 94.8 | Plus |
| gol-PC | 461 | CG2679-PC | 1..376 | 1..381 | 1875 | 94.8 | Plus |
| godzilla-PD | 536 | CG10277-PD | 89..280 | 141..347 | 208 | 28.7 | Plus |
