Clone Sequence Records
BO01153.3prime Sequence
833 bp (755 high quality bases) assembled on 2005-11-30
> BO01153.3prime
ATGGTCTAGAAAGCTTGCCGGACTGCCCTGCATACTGTCATCGCTCTCCA
GGTAGGTGACGTAGGAGTCGGTGCTGTCCGGATGGTGGTGCGAGGTGATC
CCGGAGTCCAAACTGCTGCCTCCGGGCTGCTGGTTCGGCTGCTGGTTCTG
ATGGTTGTGCGGTCCGCCGGGGGGCGGGGGGTGCTGGTGGGGAGGTCCTT
GCGCCGGATGCGAGTGCGGATGCGGCGGCAGAATGGGCATCCCGTTCAGG
TCGTAGCCGTGCATCTGATTGACCAACTGCTGAAATGCGGGCGTGTGGGT
ATTGATCGCTCCATTGCTGTCGAGATCGGCGTGAAGGGCGAAGTCGCTTA
AGGCTTTCCATGGCGGTTGATATGTCTGCACATCCAGGCCCTGAAGATTC
AGTGGGGAGTCATGCCGCACCGGGGAACTGGCGATCATGGGGATGCCCTG
CATGGCGCCGTAGCCCAGCTTGCGACCCTCCTTCTCCTGCTGCATTTGCA
GCTTCATCTGAATGGTCTTCTTCTTGTCCTTGCAGCGCTTGTTCTGGAAC
CATACTCGGATGACTCGCGGCGACAGGCTCGTCATCTCCACCAGCTGCTC
CTTCATGAGCGCATCAGGTCGCGGATTAGCATTGTAGCAGGTTCTGAGCG
TATGCAGCTGTTTCTCATTGAGCACGGTCCGAACCCGCGTGGGCTTGCCA
TCCGATGGCCCCGAGGGTCGCTTGTCCCTAATACTTTTGTGTGAGCCCGA
TTCGCTGCCAGAATCTGACATTGAACCCAATTCGCTGGAATGGGTGTTAT
TGCTAAGGTTGGTGTTGTTGTTGTTACTACTGC
BO01153.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10619-PB | 1398 | tup-RB | 581..1395 | 833..19 | 4050 | 99.8 | Minus |
CG10619-PA | 1605 | tup-RA | 581..1378 | 833..36 | 3965 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RB | 3314 | CG10619-RB | 1047..1861 | 833..19 | 4060 | 99.9 | Minus |
tup-RC | 2270 | CG10619-RC | 1047..1844 | 833..36 | 3975 | 99.9 | Minus |
tup-RA | 3251 | CG10619-RA | 1047..1844 | 833..36 | 3975 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18860960..18861208 | 19..267 | 1245 | 100 | Plus |
2L | 23513712 | 2L | 18861682..18861899 | 265..482 | 1090 | 100 | Plus |
2L | 23513712 | 2L | 18861955..18862122 | 480..647 | 840 | 100 | Plus |
2L | 23513712 | 2L | 18862180..18862303 | 644..767 | 620 | 100 | Plus |
2L | 23513712 | 2L | 18864095..18864163 | 765..833 | 330 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:01:26 has no hits.
BO01153.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:28 Download gff for
BO01153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-PB | 581..1398 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:13 Download gff for
BO01153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10619-PB | 581..1398 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:55 Download gff for
BO01153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1047..1861 | 19..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:13 Download gff for
BO01153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1047..1861 | 19..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:13 Download gff for
BO01153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18860960..18861205 | 19..264 | 100 | <- | Plus |
2L | 18861682..18861897 | 265..480 | 100 | <- | Plus |
2L | 18861956..18862118 | 481..643 | 100 | <- | Plus |
2L | 18862180..18862300 | 644..764 | 100 | <- | Plus |
2L | 18864095..18864163 | 765..833 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:55 Download gff for
BO01153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18860960..18861205 | 19..264 | 100 | <- | Plus |
arm_2L | 18861682..18861897 | 265..480 | 100 | <- | Plus |
arm_2L | 18861956..18862118 | 481..643 | 100 | <- | Plus |
arm_2L | 18862180..18862300 | 644..764 | 100 | <- | Plus |
arm_2L | 18864095..18864163 | 765..833 | 98 | | Plus |
BO01153.5prime Sequence
857 bp (783 high quality bases) assembled on 2005-11-30
> BO01153.5prime
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAAAT
GCTATCCGCGACCTGATGCGCTCATGAAAGAGCAGCTGGTGGAGATGACG
AGCCTGG
BO01153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10619-PA | 1605 | tup-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
CG10619-PB | 1398 | tup-RB | 1..782 | 17..798 | 3910 | 100 | Plus |
CG10619-PA | 1605 | tup-RA | 788..840 | 804..856 | 240 | 98.1 | Plus |
CG10619-PB | 1398 | tup-RB | 788..840 | 804..856 | 240 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RC | 2270 | CG10619-RC | 467..1306 | 17..856 | 4140 | 99.6 | Plus |
tup-RB | 3314 | CG10619-RB | 467..1306 | 17..856 | 4140 | 99.6 | Plus |
tup-RA | 3251 | CG10619-RA | 467..1306 | 17..856 | 4140 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18865468..18865659 | 347..156 | 960 | 100 | Minus |
2L | 23513712 | 2L | 18864095..18864285 | 665..475 | 955 | 100 | Minus |
2L | 23513712 | 2L | 18880657..18880795 | 155..17 | 695 | 100 | Minus |
2L | 23513712 | 2L | 18864392..18864525 | 477..344 | 670 | 100 | Minus |
2L | 23513712 | 2L | 18862180..18862303 | 786..663 | 620 | 100 | Minus |
2L | 23513712 | 2L | 18862049..18862122 | 856..783 | 280 | 91.9 | Minus |
Blast to na_te.dros performed 2015-02-13 05:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 2557..2604 | 58..104 | 120 | 75 | Plus |
BO01153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:28 Download gff for
BO01153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-PA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:14 Download gff for
BO01153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10619-PB | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:21 Download gff for
BO01153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RA | 467..1306 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:26 Download gff for
BO01153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RA | 467..1306 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:26 Download gff for
BO01153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18862048..18862118 | 787..857 | 94 | <- | Minus |
2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
2L | 18880657..18880795 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:21 Download gff for
BO01153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18862048..18862118 | 787..857 | 94 | <- | Minus |
arm_2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
arm_2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
arm_2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
arm_2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
arm_2L | 18880657..18880795 | 17..155 | 100 | | Minus |
BO01153.complete Sequence
1429 bp (1429 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629437
> BO01153.complete
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATG
CTAATCCGCGACCTGATGCGCTCATGAAGGAGCAGCTGGTGGAGATGACG
AGCCTGTCGCCGCGAGTCATCCGAGTATGGTTCCAGAACAAGCGCTGCAA
GGACAAGAAGAAGACCATTCAGATGAAGCTGCAAATGCAGCAGGAGAAGG
AGGGTCGCAAGCTGGGCTACGGCGCCATGCAGGGCATCCCCATGATCGCC
AGTTCCCCGGTGCGGCATGACTCCCCACTGAATCTTCAGGGCCTGGATGT
GCAGACATATCAACCGCCATGGAAAGCCTTAAGCGACTTCGCCCTTCACG
CCGATCTCGACAGCAATGGAGCGATCAATACCCACACGCCCGCATTTCAG
CAGTTGGTCAATCAGATGCACGGCTACGACCTGAACGGGATGCCCATTCT
GCCGCCGCATCCGCACTCGCATCCGGCGCAAGGACCTCCCCACCAGCACC
CCCCGCCCCCCGGCGGACCGCACAACCATCAGAACCAGCAGCCGAACCAG
CAGCCCGGAGGCAGCAGTTTGGACTCCGGGATCACCTCGCACCACCATCC
GGACAGCACCGACTCCTACGTCACCTACCTGGAGAGCGATGACAGTATGC
AGGGCAGTCCGGCAAGCTTTCTAGACCAT
BO01153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RB | 1398 | CG10619-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
tup-RC | 1605 | CG10619-PC | 1..1378 | 17..1394 | 6890 | 100 | Plus |
tup-RA | 1605 | CG10619-PA | 1..1378 | 17..1394 | 6890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-RB | 3314 | CG10619-RB | 467..1861 | 17..1411 | 6975 | 100 | Plus |
tup-RC | 2270 | CG10619-RC | 467..1844 | 17..1394 | 6890 | 100 | Plus |
tup-RA | 3251 | CG10619-RA | 467..1844 | 17..1394 | 6890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18860960..18861208 | 1411..1163 | 1245 | 100 | Minus |
2L | 23513712 | 2L | 18861682..18861899 | 1165..948 | 1090 | 100 | Minus |
2L | 23513712 | 2L | 18865468..18865659 | 347..156 | 960 | 100 | Minus |
2L | 23513712 | 2L | 18864095..18864285 | 665..475 | 955 | 100 | Minus |
2L | 23513712 | 2L | 18861955..18862122 | 950..783 | 840 | 100 | Minus |
2L | 23513712 | 2L | 18880657..18880795 | 155..17 | 695 | 100 | Minus |
2L | 23513712 | 2L | 18864392..18864525 | 477..344 | 670 | 100 | Minus |
2L | 23513712 | 2L | 18862180..18862303 | 786..663 | 620 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 2557..2604 | 58..104 | 120 | 75 | Plus |
BO01153.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:50 Download gff for
BO01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 1..1398 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:47 Download gff for
BO01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 462..1856 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:21 Download gff for
BO01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 467..1861 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:50 Download gff for
BO01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 462..1856 | 17..1411 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:48 Download gff for
BO01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tup-RB | 467..1861 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:48 Download gff for
BO01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
2L | 18880657..18880795 | 17..155 | 100 | | Minus |
2L | 18860958..18861205 | 1166..1413 | 99 | <- | Minus |
2L | 18861682..18861897 | 950..1165 | 100 | <- | Minus |
2L | 18861956..18862118 | 787..949 | 100 | <- | Minus |
2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:21 Download gff for
BO01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18864393..18864523 | 346..476 | 100 | <- | Minus |
arm_2L | 18865470..18865659 | 156..345 | 100 | <- | Minus |
arm_2L | 18880657..18880795 | 17..155 | 100 | | Minus |
arm_2L | 18864095..18864283 | 477..665 | 100 | <- | Minus |
arm_2L | 18860958..18861205 | 1166..1413 | 99 | <- | Minus |
arm_2L | 18861682..18861897 | 950..1165 | 100 | <- | Minus |
arm_2L | 18861956..18862118 | 787..949 | 100 | <- | Minus |
arm_2L | 18862180..18862300 | 666..786 | 100 | <- | Minus |
BO01153.pep Sequence
Translation from 16 to 1429
> BO01153.pep
MVMAEIGGHLAHQLPLHNHNHNQTGLQPSLVMNHHLDLDCHGHDVIKKQR
LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDG
KTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQ
LLPGDEFALRDAGALYCKEDHDVLEKSSQSSLTSSSVESNNNISSSNNNN
TNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVLNE
KQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKT
IQMKLQMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQP
PWKALSDFALHADLDSNGAINTHTPAFQQLVNQMHGYDLNGMPILPPHPH
SHPAQGPPHQHPPPPGGPHNHQNQQPNQQPGGSSLDSGITSHHHPDSTDS
YVTYLESDDSMQGSPASFLDH
BO01153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tup-PB | 465 | CG10619-PB | 1..465 | 1..465 | 2549 | 100 | Plus |
tup-PC | 534 | CG10619-PC | 1..459 | 1..459 | 2518 | 100 | Plus |
tup-PA | 534 | CG10619-PA | 1..459 | 1..459 | 2518 | 100 | Plus |
Lim1-PA | 505 | CG11354-PA | 27..339 | 54..337 | 404 | 30.2 | Plus |
ap-PC | 468 | CG8376-PC | 142..451 | 49..331 | 391 | 31.5 | Plus |