Clone BO01153 Report

Search the DGRC for BO01153

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:53
Vector:pDNR-Dual
Associated Gene/Transcripttup-RB
Protein status:BO01153.pep:
Sequenced Size:1429

Clone Sequence Records

BO01153.3prime Sequence

833 bp (755 high quality bases) assembled on 2005-11-30

> BO01153.3prime
ATGGTCTAGAAAGCTTGCCGGACTGCCCTGCATACTGTCATCGCTCTCCA
GGTAGGTGACGTAGGAGTCGGTGCTGTCCGGATGGTGGTGCGAGGTGATC
CCGGAGTCCAAACTGCTGCCTCCGGGCTGCTGGTTCGGCTGCTGGTTCTG
ATGGTTGTGCGGTCCGCCGGGGGGCGGGGGGTGCTGGTGGGGAGGTCCTT
GCGCCGGATGCGAGTGCGGATGCGGCGGCAGAATGGGCATCCCGTTCAGG
TCGTAGCCGTGCATCTGATTGACCAACTGCTGAAATGCGGGCGTGTGGGT
ATTGATCGCTCCATTGCTGTCGAGATCGGCGTGAAGGGCGAAGTCGCTTA
AGGCTTTCCATGGCGGTTGATATGTCTGCACATCCAGGCCCTGAAGATTC
AGTGGGGAGTCATGCCGCACCGGGGAACTGGCGATCATGGGGATGCCCTG
CATGGCGCCGTAGCCCAGCTTGCGACCCTCCTTCTCCTGCTGCATTTGCA
GCTTCATCTGAATGGTCTTCTTCTTGTCCTTGCAGCGCTTGTTCTGGAAC
CATACTCGGATGACTCGCGGCGACAGGCTCGTCATCTCCACCAGCTGCTC
CTTCATGAGCGCATCAGGTCGCGGATTAGCATTGTAGCAGGTTCTGAGCG
TATGCAGCTGTTTCTCATTGAGCACGGTCCGAACCCGCGTGGGCTTGCCA
TCCGATGGCCCCGAGGGTCGCTTGTCCCTAATACTTTTGTGTGAGCCCGA
TTCGCTGCCAGAATCTGACATTGAACCCAATTCGCTGGAATGGGTGTTAT
TGCTAAGGTTGGTGTTGTTGTTGTTACTACTGC

BO01153.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10619-PB 1398 tup-RB 581..1395 833..19 4050 99.8 Minus
CG10619-PA 1605 tup-RA 581..1378 833..36 3965 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RB 3314 CG10619-RB 1047..1861 833..19 4060 99.9 Minus
tup-RC 2270 CG10619-RC 1047..1844 833..36 3975 99.9 Minus
tup-RA 3251 CG10619-RA 1047..1844 833..36 3975 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18860960..18861208 19..267 1245 100 Plus
2L 23513712 2L 18861682..18861899 265..482 1090 100 Plus
2L 23513712 2L 18861955..18862122 480..647 840 100 Plus
2L 23513712 2L 18862180..18862303 644..767 620 100 Plus
2L 23513712 2L 18864095..18864163 765..833 330 98.6 Plus
Blast to na_te.dros performed on 2015-02-12 16:01:26 has no hits.

BO01153.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:28 Download gff for BO01153.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-PB 581..1398 18..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:13 Download gff for BO01153.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10619-PB 581..1398 18..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:55 Download gff for BO01153.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1047..1861 19..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:35:13 Download gff for BO01153.3prime
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1047..1861 19..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:35:13 Download gff for BO01153.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18860960..18861205 19..264 100 <- Plus
2L 18861682..18861897 265..480 100 <- Plus
2L 18861956..18862118 481..643 100 <- Plus
2L 18862180..18862300 644..764 100 <- Plus
2L 18864095..18864163 765..833 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:55 Download gff for BO01153.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18860960..18861205 19..264 100 <- Plus
arm_2L 18861682..18861897 265..480 100 <- Plus
arm_2L 18861956..18862118 481..643 100 <- Plus
arm_2L 18862180..18862300 644..764 100 <- Plus
arm_2L 18864095..18864163 765..833 98   Plus

BO01153.5prime Sequence

857 bp (783 high quality bases) assembled on 2005-11-30

> BO01153.5prime
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAAAT
GCTATCCGCGACCTGATGCGCTCATGAAAGAGCAGCTGGTGGAGATGACG
AGCCTGG

BO01153.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10619-PA 1605 tup-RA 1..782 17..798 3910 100 Plus
CG10619-PB 1398 tup-RB 1..782 17..798 3910 100 Plus
CG10619-PA 1605 tup-RA 788..840 804..856 240 98.1 Plus
CG10619-PB 1398 tup-RB 788..840 804..856 240 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RC 2270 CG10619-RC 467..1306 17..856 4140 99.6 Plus
tup-RB 3314 CG10619-RB 467..1306 17..856 4140 99.6 Plus
tup-RA 3251 CG10619-RA 467..1306 17..856 4140 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18865468..18865659 347..156 960 100 Minus
2L 23513712 2L 18864095..18864285 665..475 955 100 Minus
2L 23513712 2L 18880657..18880795 155..17 695 100 Minus
2L 23513712 2L 18864392..18864525 477..344 670 100 Minus
2L 23513712 2L 18862180..18862303 786..663 620 100 Minus
2L 23513712 2L 18862049..18862122 856..783 280 91.9 Minus
Blast to na_te.dros performed 2015-02-13 05:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 2557..2604 58..104 120 75 Plus

BO01153.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:28 Download gff for BO01153.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-PA 1..840 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:14 Download gff for BO01153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10619-PB 1..840 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:21 Download gff for BO01153.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-RA 467..1306 17..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:26 Download gff for BO01153.5prime
Subject Subject Range Query Range Percent Splice Strand
tup-RA 467..1306 17..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:26 Download gff for BO01153.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18862048..18862118 787..857 94 <- Minus
2L 18862180..18862300 666..786 100 <- Minus
2L 18864095..18864283 477..665 100 <- Minus
2L 18864393..18864523 346..476 100 <- Minus
2L 18865470..18865659 156..345 100 <- Minus
2L 18880657..18880795 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:21 Download gff for BO01153.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18862048..18862118 787..857 94 <- Minus
arm_2L 18862180..18862300 666..786 100 <- Minus
arm_2L 18864095..18864283 477..665 100 <- Minus
arm_2L 18864393..18864523 346..476 100 <- Minus
arm_2L 18865470..18865659 156..345 100 <- Minus
arm_2L 18880657..18880795 17..155 100   Minus

BO01153.complete Sequence

1429 bp (1429 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629437

> BO01153.complete
GAAGTTATCAGTCGACATGGTAATGGCAGAGATTGGTGGCCATTTGGCTC
ACCAGCTACCGTTGCACAATCACAACCACAATCAAACTGGATTACAGCCA
TCGCTGGTGATGAACCATCACCTGGATTTGGATTGCCATGGACACGATGT
GATAAAAAAACAACGCCTATCTCACTGCGTCGGATGTGGCGGCCAGATCC
ACGATCAGTACATCTTGCGCGTTGCCCCCGATCTGGAGTGGCATGCGGCG
TGTCTGAAGTGCCAGGAGTGCAGGCAGTTCCTGGACGAAAGCTGTACGTG
TTTTGTGCGCGATGGCAAGACCTACTGCAAGCGTGATTATGTTAGGTTAT
TTGGTACAAAATGTGATAAATGCGGCAACTCCTTCAGCAAAAATGATTTT
GTGATGCGGGCCAAAACGAAAATCTTTCACATCGAGTGCTTTCGATGCTC
CGCGTGTGCGCGACAATTGCTGCCAGGCGATGAATTCGCGTTACGCGATG
CCGGGGCTTTGTACTGCAAGGAGGATCACGATGTGCTGGAGAAATCGTCG
CAGAGCAGCCTCACTTCTTCGTCGGTGGAGAGCAACAACAATATTAGCAG
TAGTAACAACAACAACACCAACCTTAGCAATAACAACCATTCCAGCGAAT
TGGGTTCAATGTCAGATTCTGGCAGCGAATCGGGCTCACACAAAAGTATT
AGGGACAAGCGACCCTCGGGGCCATCGGATGGCAAGCCCACGCGGGTTCG
GACCGTGCTCAATGAGAAACAGCTGCATACGCTCAGAACCTGCTACAATG
CTAATCCGCGACCTGATGCGCTCATGAAGGAGCAGCTGGTGGAGATGACG
AGCCTGTCGCCGCGAGTCATCCGAGTATGGTTCCAGAACAAGCGCTGCAA
GGACAAGAAGAAGACCATTCAGATGAAGCTGCAAATGCAGCAGGAGAAGG
AGGGTCGCAAGCTGGGCTACGGCGCCATGCAGGGCATCCCCATGATCGCC
AGTTCCCCGGTGCGGCATGACTCCCCACTGAATCTTCAGGGCCTGGATGT
GCAGACATATCAACCGCCATGGAAAGCCTTAAGCGACTTCGCCCTTCACG
CCGATCTCGACAGCAATGGAGCGATCAATACCCACACGCCCGCATTTCAG
CAGTTGGTCAATCAGATGCACGGCTACGACCTGAACGGGATGCCCATTCT
GCCGCCGCATCCGCACTCGCATCCGGCGCAAGGACCTCCCCACCAGCACC
CCCCGCCCCCCGGCGGACCGCACAACCATCAGAACCAGCAGCCGAACCAG
CAGCCCGGAGGCAGCAGTTTGGACTCCGGGATCACCTCGCACCACCATCC
GGACAGCACCGACTCCTACGTCACCTACCTGGAGAGCGATGACAGTATGC
AGGGCAGTCCGGCAAGCTTTCTAGACCAT

BO01153.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RB 1398 CG10619-PB 1..1395 17..1411 6975 100 Plus
tup-RC 1605 CG10619-PC 1..1378 17..1394 6890 100 Plus
tup-RA 1605 CG10619-PA 1..1378 17..1394 6890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
tup-RB 3314 CG10619-RB 467..1861 17..1411 6975 100 Plus
tup-RC 2270 CG10619-RC 467..1844 17..1394 6890 100 Plus
tup-RA 3251 CG10619-RA 467..1844 17..1394 6890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18860960..18861208 1411..1163 1245 100 Minus
2L 23513712 2L 18861682..18861899 1165..948 1090 100 Minus
2L 23513712 2L 18865468..18865659 347..156 960 100 Minus
2L 23513712 2L 18864095..18864285 665..475 955 100 Minus
2L 23513712 2L 18861955..18862122 950..783 840 100 Minus
2L 23513712 2L 18880657..18880795 155..17 695 100 Minus
2L 23513712 2L 18864392..18864525 477..344 670 100 Minus
2L 23513712 2L 18862180..18862303 786..663 620 100 Minus
Blast to na_te.dros performed 2014-11-28 08:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 2557..2604 58..104 120 75 Plus

BO01153.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:50 Download gff for BO01153.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 1..1398 17..1412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:47 Download gff for BO01153.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 462..1856 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:21 Download gff for BO01153.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 467..1861 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:50 Download gff for BO01153.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 462..1856 17..1411 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:48 Download gff for BO01153.complete
Subject Subject Range Query Range Percent Splice Strand
tup-RB 467..1861 17..1413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:48 Download gff for BO01153.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18864393..18864523 346..476 100 <- Minus
2L 18865470..18865659 156..345 100 <- Minus
2L 18880657..18880795 17..155 100   Minus
2L 18860958..18861205 1166..1413 99 <- Minus
2L 18861682..18861897 950..1165 100 <- Minus
2L 18861956..18862118 787..949 100 <- Minus
2L 18862180..18862300 666..786 100 <- Minus
2L 18864095..18864283 477..665 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:21 Download gff for BO01153.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18864393..18864523 346..476 100 <- Minus
arm_2L 18865470..18865659 156..345 100 <- Minus
arm_2L 18880657..18880795 17..155 100   Minus
arm_2L 18864095..18864283 477..665 100 <- Minus
arm_2L 18860958..18861205 1166..1413 99 <- Minus
arm_2L 18861682..18861897 950..1165 100 <- Minus
arm_2L 18861956..18862118 787..949 100 <- Minus
arm_2L 18862180..18862300 666..786 100 <- Minus

BO01153.pep Sequence

Translation from 16 to 1429

> BO01153.pep
MVMAEIGGHLAHQLPLHNHNHNQTGLQPSLVMNHHLDLDCHGHDVIKKQR
LSHCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVRDG
KTYCKRDYVRLFGTKCDKCGNSFSKNDFVMRAKTKIFHIECFRCSACARQ
LLPGDEFALRDAGALYCKEDHDVLEKSSQSSLTSSSVESNNNISSSNNNN
TNLSNNNHSSELGSMSDSGSESGSHKSIRDKRPSGPSDGKPTRVRTVLNE
KQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRVIRVWFQNKRCKDKKKT
IQMKLQMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLDVQTYQP
PWKALSDFALHADLDSNGAINTHTPAFQQLVNQMHGYDLNGMPILPPHPH
SHPAQGPPHQHPPPPGGPHNHQNQQPNQQPGGSSLDSGITSHHHPDSTDS
YVTYLESDDSMQGSPASFLDH

BO01153.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
tup-PB 465 CG10619-PB 1..465 1..465 2549 100 Plus
tup-PC 534 CG10619-PC 1..459 1..459 2518 100 Plus
tup-PA 534 CG10619-PA 1..459 1..459 2518 100 Plus
Lim1-PA 505 CG11354-PA 27..339 54..337 404 30.2 Plus
ap-PC 468 CG8376-PC 142..451 49..331 391 31.5 Plus