Clone Sequence Records
BO01159.3prime Sequence
881 bp (821 high quality bases) assembled on 2005-11-30
> BO01159.3prime
ATGGTCTAGAAAGCTTGCAACTGGGCAGTCGCTTGCTGGCCAGCTCCAAC
TGCAGCTTCTGCAGCGCCAGTGTCTTGTTGATCTCCACTAGGTCGCGACT
GTGCTTTGCCGCCTGCAACTGCACCTCCAGGATCTTCATGCGCATCATGT
GCTCCTTGCTCTGCATCTCCATGAACATGCGCAGCTCAAAGTTGTTGTTG
TTGCTGCTGCTGCTGTTGGCATTGGTGCTGACTGCCGTTCCCGGCATGGT
CAATCCATTGCTGCTGCCGGACCGCTCTAGGGCCTGCGAGTCCGAGGATG
CTGGCACTGATGGGGCCAGGACTGGTGCCTGATCCTCGCTGCCCAACATG
CTACCACTGCTGGTGCGCTGTCTCTTAGACTGCGGCTTCATGCTGTCCTC
GTCGTCCTCGTTGTTGTTGTTATTGTTGTTGTTGTTATTGTGCTGGTGAT
GCATGGCGACCTGGGCCTGTGCCTGGTGCTGGTGAATGGCGGCCGCTGCC
GCTGCTGCTGCACTGGGAAATTGGCCAGAACGGAGGGCATTCAGTGCCTC
CAGCGTGGCGGATATGTTGTTCATGTTGAAGTTGGCCTGGAAGCCGGACA
TGTCACCTCCTCCGGCCATATAGGCACCGCTCGAGTCCAGGACATTAGAT
GTGGAAATCGTGGCGGGACTCTCGGCCTCGTGGATCCCGTTGCGACTGAT
GCTGTGATTAGGCGACACACTGAGACGCTCGCCGCTGCCAAGGATGTCGC
TCTGGTTGAGGTGGTGATGGTTGAAGGTCTCGTTGAAGGTCTCGTTGTTC
TCCTCCTCCTTGATGTCCACATCGCACAGTTCCTGCGGCGGTGTGCGGCT
GTCATCCATGTCGTGGTCTTCGGGATTGAAT
BO01159.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5393-PB | 1470 | apt-RB | 606..1468 | 881..19 | 4315 | 100 | Minus |
| CG5393-PD | 1452 | apt-RD | 588..1450 | 881..19 | 4315 | 100 | Minus |
| CG5393-PE | 1410 | apt-RE | 546..1408 | 881..19 | 4315 | 100 | Minus |
| CG5393-PC | 1452 | apt-RC | 588..1450 | 881..19 | 4315 | 100 | Minus |
| CG5393-PA | 1452 | apt-RA | 588..1450 | 881..19 | 4315 | 100 | Minus |
| CG2278-PA | 1803 | CG2278-RA | 1710..1738 | 219..191 | 145 | 100 | Minus |
| CG10543-PB | 2670 | CG10543-RB | 2217..2245 | 219..191 | 145 | 100 | Minus |
| CG10543-PC | 3075 | CG10543-RC | 2622..2650 | 219..191 | 145 | 100 | Minus |
| CG10543-PA | 4905 | CG10543-RA | 4452..4480 | 219..191 | 145 | 100 | Minus |
| CG10107-PA | 5502 | CG10107-RA | 265..292 | 218..191 | 140 | 100 | Minus |
| CG10107-PC | 5502 | CG10107-RC | 265..292 | 218..191 | 140 | 100 | Minus |
| CG33541-PA | 561 | CG33541-RA | 184..211 | 218..191 | 140 | 100 | Minus |
| CG33261-PI | 1704 | Trl-RI | 1402..1429 | 218..191 | 140 | 100 | Minus |
| CG33261-PA | 1749 | Trl-RA | 1402..1429 | 218..191 | 140 | 100 | Minus |
| CG33261-PF | 1749 | Trl-RF | 1402..1429 | 218..191 | 140 | 100 | Minus |
| CG17888-PD | 1944 | Pdp1-RD | 126..153 | 218..191 | 140 | 100 | Minus |
| CG17762-PD | 4413 | tomosyn-RD | 2158..2185 | 218..191 | 140 | 100 | Minus |
| CG32296-PA | 4422 | Mrtf-RA | 2512..2539 | 218..191 | 140 | 100 | Minus |
| CG6964-PA | 5901 | Gug-RA | 3370..3397 | 218..191 | 140 | 100 | Minus |
| CG6964-PB | 5958 | Gug-RB | 3370..3397 | 218..191 | 140 | 100 | Minus |
| CG6964-PD | 5958 | Gug-RD | 3370..3397 | 218..191 | 140 | 100 | Minus |
| CG6964-PC | 5967 | Gug-RC | 3370..3397 | 218..191 | 140 | 100 | Minus |
| CG10107-PA | 5502 | CG10107-RA | 243..269 | 219..193 | 135 | 100 | Minus |
| CG10107-PC | 5502 | CG10107-RC | 243..269 | 219..193 | 135 | 100 | Minus |
| CG5151-PA | 1482 | CG5151-RA | 372..398 | 218..192 | 135 | 100 | Minus |
| CG5488-PA | 1938 | B-H2-RA | 918..944 | 218..192 | 135 | 100 | Minus |
| CG5151-PB | 2088 | CG5151-RB | 978..1004 | 218..192 | 135 | 100 | Minus |
| CG4374-PA | 2577 | CG4374-RA | 1356..1382 | 219..193 | 135 | 100 | Minus |
| CG7391-PF | 2886 | Clk-RF | 2677..2703 | 218..192 | 135 | 100 | Minus |
| CG7391-PB | 3072 | Clk-RB | 2863..2889 | 218..192 | 135 | 100 | Minus |
| CG7391-PA | 3072 | Clk-RA | 2863..2889 | 218..192 | 135 | 100 | Minus |
| CG7391-PC | 3084 | Clk-RC | 2875..2901 | 218..192 | 135 | 100 | Minus |
| CG7391-PD | 3084 | Clk-RD | 2875..2901 | 218..192 | 135 | 100 | Minus |
| CG32133-PA | 6885 | CG32133-RA | 4975..5001 | 218..192 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| apt-RF | 2655 | CG5393-RF | 792..1654 | 881..19 | 4315 | 100 | Minus |
| apt-RA | 2827 | CG5393-RA | 964..1826 | 881..19 | 4315 | 100 | Minus |
| apt-RC | 2783 | CG5393-RC | 920..1782 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23597693..23598525 | 851..19 | 4165 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2655 | 510..191 | 266 | 58.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2477 | 317..147 | 172 | 61.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6797 | 270..191 | 167 | 71.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6896 | 241..191 | 162 | 82.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2915 | 243..106 | 158 | 61.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6776 | 243..191 | 154 | 79.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6923 | 387..194 | 154 | 58.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2858 | 852..345 | 148 | 52.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2521 | 377..148 | 147 | 58.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1159 | 266..189 | 146 | 68.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6851 | 269..191 | 144 | 68.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2391 | 239..191 | 143 | 79.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6779 | 239..191 | 143 | 79.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1578 | 239..191 | 142 | 78.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2523 | 434..191 | 139 | 58.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2349 | 230..191 | 139 | 87.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6818 | 291..191 | 139 | 63.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1581 | 243..191 | 136 | 75.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6821 | 239..191 | 134 | 77.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2375 | 239..189 | 134 | 75.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6864 | 342..196 | 133 | 61.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6833 | 269..191 | 133 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6761 | 230..191 | 128 | 80 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 266..191 | 126 | 65.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6755 | 226..191 | 126 | 83.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6782 | 239..191 | 125 | 75.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5637..5677 | 230..190 | 124 | 78 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3278..3318 | 231..191 | 124 | 78 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 949..1015 | 247..187 | 123 | 70.1 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3333 | 230..181 | 121 | 74 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1133 | 266..191 | 120 | 67.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2376 | 230..191 | 119 | 77.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1106 | 245..191 | 119 | 70.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2415 | 243..191 | 117 | 70.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1557 | 250..191 | 113 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2343 | 265..191 | 113 | 65.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1088 | 225..191 | 112 | 80 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7939..7982 | 234..191 | 112 | 72.7 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9383..9426 | 234..191 | 112 | 72.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6864 | 243..193 | 108 | 70.6 | Minus |
BO01159.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:38 Download gff for
BO01159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-PE | 546..1410 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:31 Download gff for
BO01159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5393-PA | 588..1452 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:36 Download gff for
BO01159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RC | 920..1789 | 13..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:49:35 Download gff for
BO01159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RC | 920..1789 | 13..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:49:35 Download gff for
BO01159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23597601..23597630 | 852..881 | 100 | -> | Minus |
| 2R | 23597693..23598532 | 13..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:36 Download gff for
BO01159.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19485124..19485153 | 852..881 | 100 | -> | Minus |
| arm_2R | 19485216..19486055 | 13..851 | 99 | | Minus |
BO01159.5prime Sequence
870 bp (809 high quality bases) assembled on 2005-11-30
> BO01159.5prime
GAAGTTATCAGTCGACATGGTCAACAAACAGTATTCGGCCACCGATCTGG
AGGCTTTTATGAAGATTGCCGCCAACTGGCAAAATTCCAATCACAACTTG
CTGGAGGGCGTCGACATAAAGACGGAAATGACACAGTACATGAACAGTCC
TTCCATGAACATGTACAAGAAGAGGGAACGCACCCAGAACTGGAACCACC
AGGAGAAGAAATACCTACTCGATCTGTGTCGCAAGGACATGCGCATTATC
GAGAACAAGAGATTGGATGCCGGTCTGACCGCCGTGAAGAACAAGGCATG
GAAGATTATCCACCAGAAGTTCTCCAATCAGTTTGGCACCGATCGCACCT
GCAATCGCCTGAAGGAACAGTGGCGTCGCATGAAGGCATGTACTCGCAAC
GAGATCCTGGACTACAATAATCGCCTGGCCAGGTTTGGAGCAGAGGTGGC
CGATCGCAAGAAGCCATCTCCGTTCACCTTCGAGGTGTGGGATTTCATGC
AGGAGGCGAAGAAGGCATGCAAATCGGAGGCCCTGGATGGCATTGATTAC
TCTAAGATTCCACTGGCCTTGGAGGAGGGTTTTGAGTATCGTGAGGATTA
CAAATTCAATCCCGAAGACCACGACATGGATGACAGCCGCACACCGCCGC
AGGAACTGTGCGATGTGGACATCAAGGAGGAGGAGAACAACGAGACCTTC
AACGAGACCTTCAACCATCACCACCTCAACCAGAGCGACATCCTTGGCAG
CGGCGAGCGTCTCAGTGTGTCGCCTAATCACAGCATCAGTCGCAACGGGA
TCCACGAGGCCGAGAGTCCCGCCACGATTTCCACATCTAATGTCCTGGAC
TCGAGCGGTGCCTATATGGC
BO01159.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5393-PD | 1452 | apt-RD | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG5393-PC | 1452 | apt-RC | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG5393-PA | 1452 | apt-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG5393-PB | 1470 | apt-RB | 21..872 | 19..870 | 4260 | 100 | Plus |
| CG5393-PE | 1410 | apt-RE | 1..812 | 59..870 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| apt-RA | 2827 | CG5393-RA | 377..1230 | 17..870 | 4270 | 100 | Plus |
| apt-RC | 2783 | CG5393-RC | 333..1186 | 17..870 | 4270 | 100 | Plus |
| apt-RD | 2762 | CG5393-RD | 312..1165 | 17..870 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23597059..23597320 | 125..386 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 23597383..23597630 | 386..633 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 23597693..23597929 | 634..870 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 23596891..23596997 | 19..125 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:44:39 has no hits.
BO01159.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:39 Download gff for
BO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-PC | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:32 Download gff for
BO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5393-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:24 Download gff for
BO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 341..1202 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:47:10 Download gff for
BO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 304..1165 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:47:10 Download gff for
BO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23597060..23597320 | 126..386 | 100 | -> | Plus |
| 2R | 23597384..23597630 | 387..633 | 100 | -> | Plus |
| 2R | 23597693..23597929 | 634..870 | 100 | | Plus |
| 2R | 23596882..23596997 | 8..125 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:24 Download gff for
BO01159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19484907..19485153 | 387..633 | 100 | -> | Plus |
| arm_2R | 19484405..19484520 | 8..125 | 96 | -> | Plus |
| arm_2R | 19484583..19484843 | 126..386 | 100 | -> | Plus |
| arm_2R | 19485216..19485452 | 634..870 | 100 | | Plus |
BO01159.complete Sequence
1484 bp assembled on 2011-06-28
> BO01159.complete
GAAGTTATCAGTCGACATGGTCAACAAACAGTATTCGGCCACCGATCTGG
AGGCTTTTATGAAGATTGCCGCCAACTGGCAAAATTCCAATCACAACTTG
CTGGAGGGCGTCGACATAAAGACGGAAATGACACAGTACATGAACAGTCC
TTCCATGAACATGTACAAGAAGAGGGAACGCACCCAGAACTGGAACCACC
AGGAGAAGAAATACCTACTCGATCTGTGTCGCAAGGACATGCGCATTATC
GAGAACAAGAGATTGGATGCCGGTCTGACCGCCGTGAAGAACAAGGCATG
GAAGATTATCCACCAGAAGTTCTCCAATCAGTTTGGCACCGATCGCACCT
GCAATCGCCTGAAGGAACAGTGGCGTCGCATGAAGGCATGTACTCGCAAC
GAGATCCTGGACTACAATAATCGCCTGGCCAGGTTTGGAGCAGAGGTGGC
CGATCGCAAGAAGCCATCTCCGTTCACCTTCGAGGTGTGGGATTTCATGC
AGGAGGCGAAGAAGGCATGCAAATCGGAGGCCCTGGATGGCATTGATTAC
TCTAAGATTCCACTGGCCTTGGAGGAGGGTTTTGAGTATCGTGAGGATTA
CAAATTCAATCCCGAAGACCACGACATGGATGACAGCCGCACACCGCCGC
AGGAACTGTGCGATGTGGACATCAAGGAGGAGGAGAACAACGAGACCTTC
AACGAGACCTTCAACCATCACCACCTCAACCAGAGCGACATCCTTGGCAG
CGGCGAGCGTCTCAGTGTGTCGCCTAATCACAGCATCAGTCGCAACGGGA
TCCACGAGGCCGAGAGTCCCGCCACGATTTCCACATCTAATGTCCTGGAC
TCGAGCGGTGCCTATATGGCCGGAGGAGGTGACATGTCCGGCTTCCAGGC
CAACTTCAACATGAACAACATATCCGCCACGCTGGAGGCACTGAATGCCC
TCCGTTCTGGCCAATTTCCCAGTGCAGCAGCAGCGGCAGCGGCCGCCATT
CACCAGCACCAGGCACAGGCCCAGGTCGCCATGCATCACCAGCACAATAA
CAACAACAACAATAACAACAACAACGAGGACGACGAGGACAGCATGAAGC
CGCAGTCTAAGAGACAGCGCACCAGCAGTGGTAGCATGTTGGGCAGCGAG
GATCAGGCACCAGTCCTGGCCCCATCAGTGCCAGCATCCTCGGACTCGCA
GGCCCTAGAGCGGTCCGGCAGCAGCAATGGATTGACCATGCCGGGAACGG
CAGTCAGCACCAATGCCAACAGCAGCAGCAGCAACAACAACAACTTTGAG
CTGCGCATGTTCATGGAGATGCAGAGCAAGGAGCACATGATGCGCATGAA
GATCCTGGAGGTGCAGTTGCAGGCGGCAAAGCACAGTCGCGACCTAGTGG
AGATCAACAAGACACTGGCGCTGCAGAAGCTGCAGTTGGAGCTGGCCAGC
AAGCGACTGCCCAGTTGCAAGCTTTCTAGACCAT
BO01159.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| apt-RA | 1452 | CG5393-PA | 1..1450 | 17..1466 | 7250 | 100 | Plus |
| apt-RC | 1452 | CG5393-PC | 1..1450 | 17..1466 | 7250 | 100 | Plus |
| apt-RD | 1452 | CG5393-PD | 1..1450 | 17..1466 | 7250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| apt-RA | 2827 | CG5393-RA | 377..1826 | 17..1466 | 7250 | 100 | Plus |
| apt-RC | 2783 | CG5393-RC | 333..1782 | 17..1466 | 7250 | 100 | Plus |
| apt-RD | 2762 | CG5393-RD | 312..1761 | 17..1466 | 7250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23597693..23598525 | 634..1466 | 4165 | 100 | Plus |
| 2R | 25286936 | 2R | 23597059..23597320 | 125..386 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 23597383..23597630 | 386..633 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 23596891..23596997 | 19..125 | 535 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2655 | 975..1294 | 266 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2477 | 1168..1338 | 172 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6797 | 1215..1294 | 167 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6896 | 1244..1294 | 162 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2915 | 1242..1379 | 158 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6776 | 1242..1294 | 154 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6923 | 1098..1291 | 154 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2858 | 633..1140 | 148 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2521 | 1108..1337 | 147 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1159 | 1219..1296 | 146 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6851 | 1216..1294 | 144 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2391 | 1246..1294 | 143 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6779 | 1246..1294 | 143 | 79.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1578 | 1246..1294 | 142 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2523 | 1051..1294 | 139 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2349 | 1255..1294 | 139 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6818 | 1194..1294 | 139 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1581 | 1242..1294 | 136 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2375 | 1246..1296 | 134 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6821 | 1246..1294 | 134 | 77.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6864 | 1143..1289 | 133 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6833 | 1216..1294 | 133 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6761 | 1255..1294 | 128 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 1219..1294 | 126 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6755 | 1259..1294 | 126 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6782 | 1246..1294 | 125 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5637..5677 | 1255..1295 | 124 | 78 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3278..3318 | 1254..1294 | 124 | 78 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 949..1015 | 1238..1298 | 123 | 70.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3333 | 1255..1304 | 121 | 74 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1133 | 1219..1294 | 120 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2376 | 1255..1294 | 119 | 77.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1106 | 1240..1294 | 119 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2415 | 1242..1294 | 117 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1557 | 1235..1294 | 113 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2343 | 1220..1294 | 113 | 65.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1088 | 1260..1294 | 112 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7939..7982 | 1251..1294 | 112 | 72.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9383..9426 | 1251..1294 | 112 | 72.7 | Plus |
BO01159.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 11:52:37 Download gff for
BO01159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RA | 375..1824 | 17..1468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:15 Download gff for
BO01159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 349..1798 | 17..1468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:23 Download gff for
BO01159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 312..1761 | 17..1468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:23 Download gff for
BO01159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23597384..23597630 | 387..633 | 100 | -> | Plus |
| 2R | 23596890..23596997 | 17..125 | 99 | -> | Plus |
| 2R | 23597060..23597320 | 126..386 | 100 | -> | Plus |
| 2R | 23597693..23598525 | 634..1468 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:15 Download gff for
BO01159.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19484907..19485153 | 387..633 | 100 | -> | Plus |
| arm_2R | 19484413..19484520 | 17..125 | 99 | -> | Plus |
| arm_2R | 19484583..19484843 | 126..386 | 100 | -> | Plus |
| arm_2R | 19485216..19486048 | 634..1468 | 99 | | Plus |
BO01159.pep Sequence
Translation from 16 to 1483
> BO01159.pep
MVNKQYSATDLEAFMKIAANWQNSNHNLLEGVDIKTEMTQYMNSPSMNMY
KKRERTQNWNHQEKKYLLDLCRKDMRIIENKRLDAGLTAVKNKAWKIIHQ
KFSNQFGTDRTCNRLKEQWRRMKACTRNEILDYNNRLARFGAEVADRKKP
SPFTFEVWDFMQEAKKACKSEALDGIDYSKIPLALEEGFEYREDYKFNPE
DHDMDDSRTPPQELCDVDIKEEENNETFNETFNHHHLNQSDILGSGERLS
VSPNHSISRNGIHEAESPATISTSNVLDSSGAYMAGGGDMSGFQANFNMN
NISATLEALNALRSGQFPSAAAAAAAAIHQHQAQAQVAMHHQHNNNNNNN
NNNEDDEDSMKPQSKRQRTSSGSMLGSEDQAPVLAPSVPASSDSQALERS
GSSNGLTMPGTAVSTNANSSSSNNNNFELRMFMEMQSKEHMMRMKILEVQ
LQAAKHSRDLVEINKTLALQKLQLELASKRLPSCKLSRP
BO01159.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| apt-PA | 483 | CG5393-PA | 1..483 | 1..483 | 2516 | 100 | Plus |
| apt-PC | 483 | CG5393-PC | 1..483 | 1..483 | 2516 | 100 | Plus |
| apt-PD | 483 | CG5393-PD | 1..483 | 1..483 | 2516 | 100 | Plus |
| apt-PF | 499 | CG5393-PF | 18..499 | 2..483 | 2511 | 100 | Plus |
| apt-PB | 489 | CG5393-PB | 8..489 | 2..483 | 2511 | 100 | Plus |
