Clone BO01162 Report

Search the DGRC for BO01162

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:62
Vector:pDNR-Dual
Associated Gene/Transcripther-RA
Protein status:BO01162.pep:
Sequenced Size:1495

Clone Sequence Records

BO01162.3prime Sequence

832 bp (712 high quality bases) assembled on 2005-11-30

> BO01162.3prime
ATGGTCTAGAAAGCTTGCAGTTTGACTTAACGTGCCCTGTTTAGAGTACA
TGTCCTTGATTATCTGCATGCGAGTCATTCGAGTCGCGCACAGCCAGGAG
TCCTTAATTTGAAATGCCTCGAACTGCTTGCGATCTTCCTTGAAGGGTTT
GTAGTAAATGTCATAGATGATGCGCAGGATGCGTTGCACATTCTCCTGCG
ACGGCTTCTTTGAGTGCTTTGCAAATGTTTGGTTCTTTTGCATCTTTGTG
TACTTGCCATCATCCCACCAATCTGGAAAATCTGTATCTGCATCGCCAGC
TTTAAGGTCCTTCTTGAGTTCCGCTTTGGGACTTATGTGATGTACAGCAT
CCGGCGTACTCCAACTCCAAGCCAGATCGGTCAGCGATGATTGTTTTATT
TTAACTGGTTCCTCTCCGCTCAGCATTGGCACAAGAAACTCATCCTGCTG
ATCTTCTTCGGCAAGGGACATGGCCAACTCATCGTCTAATTCGTCCATTT
GCTGCTGGACAGAAATTGAAGTGCTCTTTATGGGCAGCTCCAATTTTGTT
GGAGCTCCCGGCGGTGGATCTATTGACTGGAACCATCGCAACTGGCCATC
AACGTTGACAGCGATGACGTGCTTATCCCGGATGTCTCCATGGAGAATCT
GCGGGTTGCTAATGGTGATGATGGGCGGCTGCTCCTCCTCCTGCAGTTCC
TCGTAAACAAATTCCAAACTTTCCTCGTCGTATTTCATACTGCCTACCAG
GGCTTCTTTTAAGGAATATTTCCGTGCTCCAGCTGCTTATTCAGCACAGG
ACTCTGGTCCTCCCAGCACTGTTCTTTCTTTT

BO01162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4694-PA 1464 her-RA 718..1461 762..19 3720 100 Minus
CG4694-PA 1464 her-RA 666..718 813..761 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 845..1659 832..19 4005 99.6 Minus
her-RA 2070 CG4694-RA 845..1659 832..19 4005 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16678643..16678972 348..19 1650 100 Minus
2L 23513712 2L 16678318..16678582 612..348 1325 100 Minus
2L 23513712 2L 16678029..16678250 832..612 1000 97.7 Minus
Blast to na_te.dros performed on 2015-02-11 15:33:39 has no hits.

BO01162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:43 Download gff for BO01162.3prime
Subject Subject Range Query Range Percent Splice Strand
her-PA 708..724 356..372 94   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:40 Download gff for BO01162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4694-PA 647..1464 16..832 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:18 Download gff for BO01162.3prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 845..1659 19..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:15 Download gff for BO01162.3prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 845..1659 19..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:15 Download gff for BO01162.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16678029..16678249 613..832 98 -> Minus
2L 16678318..16678581 349..612 100 -> Minus
2L 16678643..16678972 19..348 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:18 Download gff for BO01162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16678029..16678249 613..832 98 -> Minus
arm_2L 16678318..16678581 349..612 100 -> Minus
arm_2L 16678643..16678972 19..348 100   Minus

BO01162.5prime Sequence

792 bp (665 high quality bases) assembled on 2005-11-30

> BO01162.5prime
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTA

BO01162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4694-PA 1464 her-RA 1..776 17..792 3880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 199..974 17..792 3880 100 Plus
her-RA 2070 CG4694-RA 199..974 17..792 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16677383..16678158 17..792 3880 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:07:08 has no hits.

BO01162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:24:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:41 Download gff for BO01162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4694-PA 1..775 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:02 Download gff for BO01162.5prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..973 17..791 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:16 Download gff for BO01162.5prime
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..973 17..791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:16 Download gff for BO01162.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16677383..16678157 17..791 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:02 Download gff for BO01162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16677383..16678157 17..791 100   Plus

BO01162.complete Sequence

1495 bp (1495 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629439

> BO01162.complete
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAAC
TGCAGGAGGAGGAGCAGCCGCCCATCATCACCATTAGCAACCCGCAGATT
CTCCATGGAGACATCCGGGATAAGCACGTCATCGCTGTCAACGTTGATGG
CCAGTTGCGATGGTTCCAGTCAATAGATCCACCGCCGGGAGCTCCAACAA
AATTGGAGCTGCCCATAAAGAGCACTTCAATTTCTGTCCAGCAGCAAATG
GACGAATTAGACGATGAGTTGGCCATGTCCCTTGCCGAAGAAGATCAGCA
GGATGAGTTTCTTGTGCCAATGCTGAGCGGAGAGGAACCAGTTAAAATAA
AACAATCATCGCTGACCGATCTGGCTTGGAGTTGGAGTACGCCGGATGCT
GTACATCACATAAGTCCCAAAGCGGAACTCAAGAAGGACCTTAAAGCTGG
CGATGCAGATACAGATTTTCCAGATTGGTGGGATGATGGCAAGTACACAA
AGATGCAAAAGAACCAAACATTTGCAAAGCACTCAAAGAAGCCGTCGCAG
GAGAATGTGCAACGCATCCTGCGCATCATCTATGACATTTACTACAAACC
CTTCAAGGAAGATCGCAAGCAGTTCGAGGCATTTCAAATTAAGGACTCCT
GGCTGTGCGCGACTCGAATGACTCGCATGCAGATAATCAAGGACATGTAC
TCTAAACAGGGCACGTTAAGTCAAACTGCAAGCTTTCTAGACCAT

BO01162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 1464 CG4694-PB 1..1461 17..1477 7305 100 Plus
her-RA 1464 CG4694-PA 1..1461 17..1477 7305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
her-RB 2378 CG4694-RB 199..1659 17..1477 7305 100 Plus
her-RA 2070 CG4694-RA 199..1659 17..1477 7305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16677383..16678250 17..884 4340 100 Plus
2L 23513712 2L 16678643..16678972 1148..1477 1650 100 Plus
2L 23513712 2L 16678318..16678582 884..1148 1325 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:53:48 has no hits.

BO01162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:41 Download gff for BO01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 1..1464 17..1480 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:31 Download gff for BO01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 174..1634 17..1477 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:53 Download gff for BO01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1659 17..1479 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:41 Download gff for BO01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 174..1634 17..1477 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:37 Download gff for BO01162.complete
Subject Subject Range Query Range Percent Splice Strand
her-RA 199..1659 17..1479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:37 Download gff for BO01162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16677383..16678249 17..883 100 -> Plus
2L 16678318..16678581 884..1147 100 -> Plus
2L 16678643..16678972 1148..1479 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:53 Download gff for BO01162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16677383..16678249 17..883 100 -> Plus
arm_2L 16678318..16678581 884..1147 100 -> Plus
arm_2L 16678643..16678972 1148..1479 99   Plus

BO01162.pep Sequence

Translation from 16 to 1495

> BO01162.pep
MLSADRDSVEEEYGSCSAWKFRCSVDRCPYRTNRPYNLARHEESHIGITQ
SKLYGCPVCVYNTDKASNLKRHVSIKHPGCKKRPPEAQHKDRNAKLQCLV
MGCRYETNRPYDLKRHLMVHNNPEKSHRTFKCSLCTYSSDRKANLKRHHE
LRHSGIEEAIQTAEELRQEMLLEKQMLKEHKLKYQITEKQDLKNLKLKDQ
KQKVQMLRDQQPKQRQKKEQLLEDQSPVLNKQLEHGNIPLKEALVGSMKY
DEESLEFVYEELQEEEQPPIITISNPQILHGDIRDKHVIAVNVDGQLRWF
QSIDPPPGAPTKLELPIKSTSISVQQQMDELDDELAMSLAEEDQQDEFLV
PMLSGEEPVKIKQSSLTDLAWSWSTPDAVHHISPKAELKKDLKAGDADTD
FPDWWDDGKYTKMQKNQTFAKHSKKPSQENVQRILRIIYDIYYKPFKEDR
KQFEAFQIKDSWLCATRMTRMQIIKDMYSKQGTLSQTASFLDH

BO01162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
her-PB 487 CG4694-PB 1..487 1..487 2590 100 Plus
her-PA 487 CG4694-PA 1..487 1..487 2590 100 Plus