Clone Sequence Records
BO01162.3prime Sequence
832 bp (712 high quality bases) assembled on 2005-11-30
> BO01162.3prime
ATGGTCTAGAAAGCTTGCAGTTTGACTTAACGTGCCCTGTTTAGAGTACA
TGTCCTTGATTATCTGCATGCGAGTCATTCGAGTCGCGCACAGCCAGGAG
TCCTTAATTTGAAATGCCTCGAACTGCTTGCGATCTTCCTTGAAGGGTTT
GTAGTAAATGTCATAGATGATGCGCAGGATGCGTTGCACATTCTCCTGCG
ACGGCTTCTTTGAGTGCTTTGCAAATGTTTGGTTCTTTTGCATCTTTGTG
TACTTGCCATCATCCCACCAATCTGGAAAATCTGTATCTGCATCGCCAGC
TTTAAGGTCCTTCTTGAGTTCCGCTTTGGGACTTATGTGATGTACAGCAT
CCGGCGTACTCCAACTCCAAGCCAGATCGGTCAGCGATGATTGTTTTATT
TTAACTGGTTCCTCTCCGCTCAGCATTGGCACAAGAAACTCATCCTGCTG
ATCTTCTTCGGCAAGGGACATGGCCAACTCATCGTCTAATTCGTCCATTT
GCTGCTGGACAGAAATTGAAGTGCTCTTTATGGGCAGCTCCAATTTTGTT
GGAGCTCCCGGCGGTGGATCTATTGACTGGAACCATCGCAACTGGCCATC
AACGTTGACAGCGATGACGTGCTTATCCCGGATGTCTCCATGGAGAATCT
GCGGGTTGCTAATGGTGATGATGGGCGGCTGCTCCTCCTCCTGCAGTTCC
TCGTAAACAAATTCCAAACTTTCCTCGTCGTATTTCATACTGCCTACCAG
GGCTTCTTTTAAGGAATATTTCCGTGCTCCAGCTGCTTATTCAGCACAGG
ACTCTGGTCCTCCCAGCACTGTTCTTTCTTTT
BO01162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4694-PA | 1464 | her-RA | 718..1461 | 762..19 | 3720 | 100 | Minus |
CG4694-PA | 1464 | her-RA | 666..718 | 813..761 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 845..1659 | 832..19 | 4005 | 99.6 | Minus |
her-RA | 2070 | CG4694-RA | 845..1659 | 832..19 | 4005 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16678643..16678972 | 348..19 | 1650 | 100 | Minus |
2L | 23513712 | 2L | 16678318..16678582 | 612..348 | 1325 | 100 | Minus |
2L | 23513712 | 2L | 16678029..16678250 | 832..612 | 1000 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:33:39 has no hits.
BO01162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:43 Download gff for
BO01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-PA | 708..724 | 356..372 | 94 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:40 Download gff for
BO01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4694-PA | 647..1464 | 16..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:18 Download gff for
BO01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 845..1659 | 19..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:15 Download gff for
BO01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 845..1659 | 19..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:15 Download gff for
BO01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16678029..16678249 | 613..832 | 98 | -> | Minus |
2L | 16678318..16678581 | 349..612 | 100 | -> | Minus |
2L | 16678643..16678972 | 19..348 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:18 Download gff for
BO01162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16678029..16678249 | 613..832 | 98 | -> | Minus |
arm_2L | 16678318..16678581 | 349..612 | 100 | -> | Minus |
arm_2L | 16678643..16678972 | 19..348 | 100 | | Minus |
BO01162.5prime Sequence
792 bp (665 high quality bases) assembled on 2005-11-30
> BO01162.5prime
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTA
BO01162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4694-PA | 1464 | her-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 199..974 | 17..792 | 3880 | 100 | Plus |
her-RA | 2070 | CG4694-RA | 199..974 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16677383..16678158 | 17..792 | 3880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:07:08 has no hits.
BO01162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:24:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:41 Download gff for
BO01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4694-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:02 Download gff for
BO01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..973 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:16 Download gff for
BO01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..973 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:16 Download gff for
BO01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16677383..16678157 | 17..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:02 Download gff for
BO01162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16677383..16678157 | 17..791 | 100 | | Plus |
BO01162.complete Sequence
1495 bp (1495 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629439
> BO01162.complete
GAAGTTATCAGTCGACATGCTTAGTGCGGATCGGGATTCGGTGGAGGAAG
AATATGGATCGTGCTCGGCCTGGAAATTCCGTTGCAGCGTGGACAGGTGC
CCCTACAGGACGAACAGACCCTACAATCTGGCGCGTCATGAGGAGTCCCA
CATTGGTATTACGCAGTCCAAGCTATACGGATGCCCCGTTTGCGTTTACA
ACACCGACAAGGCGTCGAACCTGAAGCGGCACGTGTCTATCAAACATCCT
GGGTGCAAAAAGCGCCCTCCGGAAGCGCAGCACAAGGATCGCAATGCCAA
GTTGCAGTGCCTGGTGATGGGATGCAGATACGAGACAAATCGTCCATACG
ACCTCAAGCGCCACTTGATGGTGCACAACAATCCGGAGAAGAGCCACAGG
ACGTTTAAGTGCTCCCTTTGCACCTACAGCTCCGACCGAAAGGCCAATCT
CAAGCGGCACCACGAGCTACGCCATTCGGGCATAGAGGAGGCCATTCAAA
CTGCGGAGGAACTGCGCCAGGAGATGCTGCTGGAGAAGCAAATGCTGAAG
GAACATAAGCTAAAATATCAGATCACAGAGAAACAGGATTTGAAGAATCT
AAAGTTGAAGGACCAAAAGCAGAAGGTGCAAATGCTGAGGGATCAGCAAC
CGAAACAAAGGCAAAAGAAAGAACAGTTGCTGGAGGACCAGAGTCCTGTG
CTGAATAAGCAGCTGGAGCACGGAAATATTCCTTTAAAAGAAGCCCTGGT
AGGCAGTATGAAATACGACGAGGAAAGTTTGGAATTTGTTTACGAGGAAC
TGCAGGAGGAGGAGCAGCCGCCCATCATCACCATTAGCAACCCGCAGATT
CTCCATGGAGACATCCGGGATAAGCACGTCATCGCTGTCAACGTTGATGG
CCAGTTGCGATGGTTCCAGTCAATAGATCCACCGCCGGGAGCTCCAACAA
AATTGGAGCTGCCCATAAAGAGCACTTCAATTTCTGTCCAGCAGCAAATG
GACGAATTAGACGATGAGTTGGCCATGTCCCTTGCCGAAGAAGATCAGCA
GGATGAGTTTCTTGTGCCAATGCTGAGCGGAGAGGAACCAGTTAAAATAA
AACAATCATCGCTGACCGATCTGGCTTGGAGTTGGAGTACGCCGGATGCT
GTACATCACATAAGTCCCAAAGCGGAACTCAAGAAGGACCTTAAAGCTGG
CGATGCAGATACAGATTTTCCAGATTGGTGGGATGATGGCAAGTACACAA
AGATGCAAAAGAACCAAACATTTGCAAAGCACTCAAAGAAGCCGTCGCAG
GAGAATGTGCAACGCATCCTGCGCATCATCTATGACATTTACTACAAACC
CTTCAAGGAAGATCGCAAGCAGTTCGAGGCATTTCAAATTAAGGACTCCT
GGCTGTGCGCGACTCGAATGACTCGCATGCAGATAATCAAGGACATGTAC
TCTAAACAGGGCACGTTAAGTCAAACTGCAAGCTTTCTAGACCAT
BO01162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 1464 | CG4694-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
her-RA | 1464 | CG4694-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-RB | 2378 | CG4694-RB | 199..1659 | 17..1477 | 7305 | 100 | Plus |
her-RA | 2070 | CG4694-RA | 199..1659 | 17..1477 | 7305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16677383..16678250 | 17..884 | 4340 | 100 | Plus |
2L | 23513712 | 2L | 16678643..16678972 | 1148..1477 | 1650 | 100 | Plus |
2L | 23513712 | 2L | 16678318..16678582 | 884..1148 | 1325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:53:48 has no hits.
BO01162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:41 Download gff for
BO01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 1..1464 | 17..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:31 Download gff for
BO01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 174..1634 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:53 Download gff for
BO01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1659 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:41 Download gff for
BO01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 174..1634 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:37 Download gff for
BO01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
her-RA | 199..1659 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:37 Download gff for
BO01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16677383..16678249 | 17..883 | 100 | -> | Plus |
2L | 16678318..16678581 | 884..1147 | 100 | -> | Plus |
2L | 16678643..16678972 | 1148..1479 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:53 Download gff for
BO01162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16677383..16678249 | 17..883 | 100 | -> | Plus |
arm_2L | 16678318..16678581 | 884..1147 | 100 | -> | Plus |
arm_2L | 16678643..16678972 | 1148..1479 | 99 | | Plus |
BO01162.pep Sequence
Translation from 16 to 1495
> BO01162.pep
MLSADRDSVEEEYGSCSAWKFRCSVDRCPYRTNRPYNLARHEESHIGITQ
SKLYGCPVCVYNTDKASNLKRHVSIKHPGCKKRPPEAQHKDRNAKLQCLV
MGCRYETNRPYDLKRHLMVHNNPEKSHRTFKCSLCTYSSDRKANLKRHHE
LRHSGIEEAIQTAEELRQEMLLEKQMLKEHKLKYQITEKQDLKNLKLKDQ
KQKVQMLRDQQPKQRQKKEQLLEDQSPVLNKQLEHGNIPLKEALVGSMKY
DEESLEFVYEELQEEEQPPIITISNPQILHGDIRDKHVIAVNVDGQLRWF
QSIDPPPGAPTKLELPIKSTSISVQQQMDELDDELAMSLAEEDQQDEFLV
PMLSGEEPVKIKQSSLTDLAWSWSTPDAVHHISPKAELKKDLKAGDADTD
FPDWWDDGKYTKMQKNQTFAKHSKKPSQENVQRILRIIYDIYYKPFKEDR
KQFEAFQIKDSWLCATRMTRMQIIKDMYSKQGTLSQTASFLDH
BO01162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
her-PB | 487 | CG4694-PB | 1..487 | 1..487 | 2590 | 100 | Plus |
her-PA | 487 | CG4694-PA | 1..487 | 1..487 | 2590 | 100 | Plus |