Clone Sequence Records
BO01163.3prime Sequence
867 bp (770 high quality bases) assembled on 2005-11-30
> BO01163.3prime
ATGGTCTAGAAAGCTTGCATTGAAGCAGTAGGCAAACTGCGAGTTGCCCG
CGGCGTTCCGATGGGGATTATACGCTTGCATTATCGTATCCATCGTGCAT
TGATATTGGTTCGATTCGCCCATGGCCACGCCCCCCATTCCGAGGGGCGG
CTGAGGGCCTTGTGGGGGCGAAGGCTTGCCAAATTTGGCAAATGCCGCTC
CACGATTTCCGGTTCCTGCTAAGGCTCTTATTCCGGTGCTCATGTCGTCG
CTACTGCCATCGTCGCAGCTCTTGTCCAGACCCTTCAAAGGCTCCAAGAT
CTGTAGCGTCGTCTTCTTGCTCGTTCCGTCGTCCATGTCGTCGGCCGCCT
CCGTCTCGCCAACGGCGATGGCGCAAGGTCCGCCGATGCCGATGCCACAC
AGACTCGGACTTTCGTCATTCTTGGGTGTTAATGGCTCGTAGACCTCGGA
GCCCGGCGAGGCAGCGCCTCGGGCCACAGCGGATGCCGATGCAGTGGCGC
CAGACATTCCCGATCGCATGTAGTACGAGCTGTTGAAGTTGTAGTCGGCC
TCCGGTTCGTCCTTGACCAGGACGCGACAGGCGCTGGCTTGCTTTTGCTG
GAAGTCAAAGTGATGGTATTGCTGCTGCTGAGCCTGCTGTTGCTGCTGCT
GCATCTGGTGCGGCACGTGGTTGCCCTGGTGGTGCAGTTGCTGCTGGTGA
TTATGGACCTGCTGCTGCTGGAAGAACTGGCCGCCATTGACATTGGTCGA
CCCAGGTCCTGGCCCCCCTCCGGAAGGATACTGCATGTGCATGTGACGAT
TGGGCTGGGCGTGATTGTGGCCTCCATTGTAGTTGTAGTAGGCGTTGAAT
GACTCGCTGTAGTGCTC
BO01163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1034-PD | 1470 | bcd-RD | 619..1467 | 867..19 | 4220 | 99.8 | Minus |
| CG1034-PE | 1257 | bcd-RE | 406..1254 | 867..19 | 4220 | 99.8 | Minus |
| CG1034-PF | 1242 | bcd-RF | 391..1239 | 867..19 | 4220 | 99.8 | Minus |
| CG1034-PG | 1485 | bcd-RG | 634..1482 | 867..19 | 4220 | 99.8 | Minus |
| CG1034-PA | 450 | bcd-RA | 165..447 | 301..19 | 1415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RG | 2514 | CG1034-RG | 829..1677 | 867..19 | 4230 | 99.9 | Minus |
| bcd-RF | 2521 | CG1034-RF | 836..1684 | 867..19 | 4230 | 99.9 | Minus |
| bcd-RE | 2536 | CG1034-RE | 851..1699 | 867..19 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757473..6758039 | 301..867 | 2820 | 99.8 | Plus |
| 3R | 32079331 | 3R | 6756679..6756962 | 19..302 | 1420 | 100 | Plus |
| 3L | 28110227 | 3L | 27541369..27541647 | 867..589 | 1335 | 98.6 | Minus |
| 3L | 28110227 | 3L | 27850458..27850736 | 867..589 | 1335 | 98.6 | Minus |
Blast to na_te.dros performed 2015-02-09 18:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..7013 | 720..523 | 279 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 720..611 | 233 | 69.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 720..611 | 233 | 69.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6921 | 720..590 | 227 | 66.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6892 | 720..589 | 225 | 68.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1200 | 745..590 | 197 | 62.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2473 | 720..611 | 183 | 64.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2529 | 720..529 | 182 | 60.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 720..596 | 166 | 59.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6977 | 720..588 | 160 | 61.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2947 | 721..611 | 151 | 62.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2581 | 720..586 | 146 | 60.3 | Minus |
BO01163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:45 Download gff for
BO01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-PG | 634..1485 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:42 Download gff for
BO01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1034-PG | 634..1485 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:53:47 Download gff for
BO01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RE | 851..1703 | 13..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:09 Download gff for
BO01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RE | 851..1703 | 13..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:09 Download gff for
BO01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6756675..6756960 | 17..300 | 99 | <- | Plus |
| 3R | 6757473..6758039 | 301..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:53:47 Download gff for
BO01163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2582397..2582682 | 17..300 | 99 | <- | Plus |
| arm_3R | 2583195..2583761 | 301..867 | 99 | | Plus |
BO01163.5prime Sequence
835 bp (768 high quality bases) assembled on 2005-11-30
> BO01163.5prime
GAAGTTATCAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACC
ATCATCCGCTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCG
CATCCGCACTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTT
GCCGCCACAATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGG
GAGCGATAAACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCC
AAGCCAGAGGAGCTGCCCGACTCTCTGGTGATGCGGCGACCACGTCGCAC
CCGCACCACTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAGCACTTTC
TGCAGGGACGATACCTCACAGCCCCCCGACTTGCGGATCTGTCAGCGAAA
CTAGCCCTGGGCACAGCCCAGGTGAAGATATGGTTTAAGAACCGTCGGCG
TCGTCACAAGATCCAATCGGATCAGCACAAGGACCAGTCCTACGAGGGGA
TGCCTCTCTCGCCGGGTATGAAACAGAGCGATGGCGATCCCCCCAGCTTG
CAGACTCTTAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGACTCCGTC
ACCCACGCCCTCAACGCCCACTGCACACATGACGGAGCACTACAGCGAGT
CATTCAACGCCTACTACAACTACAATGGAGGCCACAATCACGCCCAGGCC
AATCGTCACATGCACATGCAGTATCCTTCCGGAGGGGGGCCAGGACCTGG
GTCGACCAATGTCAATGGCGGCCAGTTCTTCCAGCAGCAGCAGGTCCATA
ATCACCAGCAGCAACTGCACCACCAGGGCAACCAC
BO01163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1034-PD | 1470 | bcd-RD | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG1034-PF | 1242 | bcd-RF | 1..591 | 245..835 | 2955 | 100 | Plus |
| CG1034-PG | 1485 | bcd-RG | 254..834 | 255..835 | 2905 | 100 | Plus |
| CG1034-PE | 1257 | bcd-RE | 26..606 | 255..835 | 2905 | 100 | Plus |
| CG1034-PG | 1485 | bcd-RG | 1..242 | 17..258 | 1210 | 100 | Plus |
| CG1034-PA | 450 | bcd-RA | 1..165 | 17..181 | 825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 2499 | CG1034-RD | 196..1014 | 17..835 | 4095 | 100 | Plus |
| bcd-RG | 2514 | CG1034-RG | 196..1029 | 17..835 | 3935 | 98.2 | Plus |
| bcd-RF | 2521 | CG1034-RF | 196..1036 | 17..835 | 3865 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757839..6758419 | 835..255 | 2905 | 100 | Minus |
| 3L | 28110227 | 3L | 27540989..27541568 | 255..834 | 2855 | 99.5 | Plus |
| 3L | 28110227 | 3L | 27850078..27850657 | 255..834 | 2855 | 99.5 | Plus |
| 3R | 32079331 | 3R | 6759107..6759271 | 181..17 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 17..178 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 17..178 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758465..6758548 | 264..181 | 390 | 97.6 | Minus |
| 3L | 28110227 | 3L | 27540860..27540943 | 181..264 | 390 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27849949..27850032 | 181..264 | 390 | 97.6 | Plus |
Blast to na_te.dros performed 2015-02-13 16:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6788 | 782..835 | 128 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6809 | 782..835 | 128 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6829 | 782..834 | 123 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2392 | 782..825 | 121 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1125 | 782..825 | 121 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6860 | 782..832 | 113 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2397 | 782..835 | 112 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..2524 | 782..825 | 112 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6896 | 782..835 | 112 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2409 | 782..835 | 109 | 70.7 | Plus |
BO01163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:47 Download gff for
BO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-PD | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:44 Download gff for
BO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1034-PD | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:56:41 Download gff for
BO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1014 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:39:55 Download gff for
BO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1014 | 17..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:39:55 Download gff for
BO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6757839..6758416 | 258..835 | 100 | <- | Minus |
| 3R | 6758472..6758547 | 182..257 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:56:41 Download gff for
BO01163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2583561..2584138 | 258..835 | 100 | <- | Minus |
| arm_3R | 2584194..2584269 | 182..257 | 100 | <- | Minus |
| arm_3R | 2584829..2584993 | 17..181 | 100 | | Minus |
BO01163.complete Sequence
1501 bp (1501 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629440
> BO01163.complete
GAAGTTATCAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACC
ATCATCCGCTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCG
CATCCGCACTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTT
GCCGCCACAATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGG
GAGCGATAAACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCC
AAGCCAGAGGAGCTGCCCGACTCTCTGGTGATGCGGCGACCACGTCGCAC
CCGCACCACTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAGCACTTTC
TGCAGGGACGATACCTCACAGCCCCCCGACTTGCGGATCTGTCAGCGAAA
CTAGCCCTGGGCACAGCCCAGGTGAAGATATGGTTTAAGAACCGTCGGCG
TCGTCACAAGATCCAATCGGATCAGCACAAGGACCAGTCCTACGAGGGGA
TGCCTCTCTCGCCGGGTATGAAACAGAGCGATGGCGATCCCCCCAGCTTG
CAGACTCTTAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGACTCCGTC
ACCCACGCCCTCAACGCCCACTGCACACATGACGGAGCACTACAGCGAGT
CATTCAACGCCTACTACAACTACAATGGAGGCCACAATCACGCCCAGGCC
AATCGTCACATGCACATGCAGTATCCTTCCGGAGGGGGGCCAGGACCTGG
GTCGACCAATGTCAATGGCGGCCAGTTCTTCCAGCAGCAGCAGGTCCATA
ATCACCAGCAGCAACTGCACCACCAGGGCAACCACGTGCCGCACCAGATG
CAGCAGCAGCAACAGCAGGCTCAGCAGCAGCAATACCATCACTTTGACTT
CCAGCAAAAGCAAGCCAGCGCCTGTCGCGTCCTGGTCAAGGACGAACCGG
AGGCCGACTACAACTTCAACAGCTCGTACTACATGCGATCGGGAATGTCT
GGCGCCACTGCATCGGCATCCGCTGTGGCCCGAGGCGCTGCCTCGCCGGG
CTCCGAGGTCTACGAGCCATTAACACCCAAGAATGACGAAAGTCCGAGTC
TGTGTGGCATCGGCATCGGCGGACCTTGCGCCATCGCCGTTGGCGAGACG
GAGGCGGCCGACGACATGGACGACGGAACGAGCAAGAAGACGACGCTACA
GATCTTGGAGCCTTTGAAGGGTCTGGACAAGAGCTGCGACGATGGCAGTA
GCGACGACATGAGCACCGGAATAAGAGCCTTAGCAGGAACCGGAAATCGT
GGAGCGGCATTTGCCAAATTTGGCAAGCCTTCGCCCCCACAAGGCCCTCA
GCCGCCCCTCGGAATGGGGGGCGTGGCCATGGGCGAATCGAACCAATATC
AATGCACGATGGATACGATAATGCAAGCGTATAATCCCCATCGGAACGCC
GCGGGCAACTCGCAGTTTGCCTACTGCTTCAATGCAAGCTTTCTAGACCA
T
BO01163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 1470 | CG1034-PD | 1..1467 | 17..1483 | 7335 | 100 | Plus |
| bcd-RG | 1485 | CG1034-PG | 1..1482 | 17..1483 | 7150 | 99 | Plus |
| bcd-RF | 1242 | CG1034-PF | 1..1239 | 245..1483 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RD | 2499 | CG1034-RD | 196..1662 | 17..1483 | 7335 | 100 | Plus |
| bcd-RG | 2514 | CG1034-RG | 196..1677 | 17..1483 | 7150 | 99 | Plus |
| bcd-RF | 2521 | CG1034-RF | 196..1684 | 17..1483 | 7080 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757473..6758419 | 1201..255 | 4735 | 100 | Minus |
| 3L | 28110227 | 3L | 27540989..27541647 | 255..913 | 3235 | 99.4 | Plus |
| 3L | 28110227 | 3L | 27850078..27850736 | 255..913 | 3235 | 99.4 | Plus |
| 3R | 32079331 | 3R | 6756679..6756962 | 1483..1200 | 1420 | 100 | Minus |
| 3R | 32079331 | 3R | 6759107..6759271 | 181..17 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 17..178 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 17..178 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758465..6758548 | 264..181 | 390 | 97.6 | Minus |
| 3L | 28110227 | 3L | 27540860..27540943 | 181..264 | 390 | 97.6 | Plus |
| 3L | 28110227 | 3L | 27849949..27850032 | 181..264 | 390 | 97.6 | Plus |
Blast to na_te.dros performed 2014-11-28 00:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..7013 | 782..979 | 279 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 782..891 | 233 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 782..891 | 233 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6921 | 782..912 | 227 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6892 | 782..913 | 225 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1200 | 757..912 | 197 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2473 | 782..891 | 183 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2529 | 782..973 | 182 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 782..906 | 166 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6977 | 782..914 | 160 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2947 | 781..891 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2581 | 782..916 | 146 | 60.3 | Plus |
BO01163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:28 Download gff for
BO01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 1..1470 | 17..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:57 Download gff for
BO01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RF | 207..264 | 17..74 | 100 | <- | Plus |
| bcd-RF | 282..310 | 75..102 | 89 | == | Plus |
| bcd-RF | 311..372 | 121..181 | 98 | -> | Plus |
| bcd-RF | 394..1699 | 182..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:35 Download gff for
BO01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1662 | 17..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:28 Download gff for
BO01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RF | 207..264 | 17..74 | 100 | <- | Plus |
| bcd-RF | 282..310 | 75..102 | 89 | == | Plus |
| bcd-RF | 311..372 | 121..181 | 98 | -> | Plus |
| bcd-RF | 394..1699 | 182..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:34 Download gff for
BO01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RD | 196..1662 | 17..1485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:34 Download gff for
BO01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6756675..6756960 | 1202..1485 | 99 | <- | Minus |
| 3R | 6757473..6758416 | 258..1201 | 100 | <- | Minus |
| 3R | 6758472..6758547 | 182..257 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:35 Download gff for
BO01163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2584829..2584993 | 17..181 | 100 | | Minus |
| arm_3R | 2584194..2584269 | 182..257 | 100 | <- | Minus |
| arm_3R | 2582397..2582682 | 1202..1485 | 99 | <- | Minus |
| arm_3R | 2583195..2584138 | 258..1201 | 100 | <- | Minus |
BO01163.pep Sequence
Translation from 16 to 1501
> BO01163.pep
MAQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFR
NPFDLLFDERTGAINYNYIRPYLPNQMPKPEELPDSLVMRRPRRTRTTFT
SSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ
SDQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPST
PTAHMTEHYSESFNAYYNYNGGHNHAQANRHMHMQYPSGGGPGPGSTNVN
GGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQAQQQQYHHFDFQQKQA
SACRVLVKDEPEADYNFNSSYYMRSGMSGATASASAVARGAASPGSEVYE
PLTPKNDESPSLCGIGIGGPCAIAVGETEAADDMDDGTSKKTTLQILEPL
KGLDKSCDDGSSDDMSTGIRALAGTGNRGAAFAKFGKPSPPQGPQPPLGM
GGVAMGESNQYQCTMDTIMQAYNPHRNAAGNSQFAYCFNASFLDH
BO01163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-PD | 489 | CG1034-PD | 1..489 | 1..489 | 2689 | 100 | Plus |
| bcd-PG | 494 | CG1034-PG | 1..494 | 1..489 | 2673 | 99 | Plus |
| bcd-PF | 413 | CG1034-PF | 1..413 | 77..489 | 2221 | 100 | Plus |
| bcd-PE | 418 | CG1034-PE | 1..418 | 77..489 | 2205 | 98.8 | Plus |
| bcd-PA | 149 | CG1034-PA | 56..149 | 396..489 | 510 | 100 | Plus |
