Clone Sequence Records
BO01170.3prime Sequence
863 bp (760 high quality bases) assembled on 2005-11-30
> BO01170.3prime
ATGGTCTAGAAAGCTTGCGGTCTCCACATTCTCGTCCTGCTCCTCCAGTT
GGACACCCACTTCATGCTCGGCCCGCCTCCGCTGTCTGCCCGCCTTGTGC
GACTGGCGATGGATGGCGAGTGAGATGCGGCGCTTGAAGGACTTGCCGCA
CTGCTCACAGCCGAACGGTCGCTCGCTGCTGTGGACGAGCATGTGGCGGT
TGAGCTCGGATGTGCTGCCGAAGCTGCGCTTCTGGCACACCGGGCACGGG
TGGGGCTTCTCCTGGCTGTGGCAGCGCTTGTGGGCAATCAGATTGCTCGA
GTAGCGGAAGCGACGGCCGCAAATGTCGCAGCCGTGCGGCTTCTCGCCCG
TGTGGGTGAGCATGTGCTTCTTGTAGCCCGACTTCTGTGTTAGCCTCTTG
CCGCAGATGCTGCACTCGAATGGCTTGATTCCGCTGTGGATTAGAAGGTG
TGTGCGCAGCGAGGACGCCTGCCGGTAGACCTTGAAGCAGGTGGGGCACC
TGTTCGGATTGTTACGATCGTGCAGCGTGACATGGCCGTCGCGGGCGTTT
CGCGTCTTAAAGGACTCTCCGCAGATTGTGCAAACGTAGGGCGTGGCCGT
GCCATGTAGCTGCATATGGTACTTGAAGGAGTTGTTGGTGCTTAGTTGCT
TGCCACAGATTTTACACTGTAGGGAGGGATTGAGGGGTTTCCAAGGCCGG
CTTCCACTGGGCAAAGTTTTCTGCGTCGCCGAAGTCTGTGCTGATTTCTC
CACAATCTCGTAGACATCTTCGCCAGCTTTGGCCTGCAAAACGGGCTCCA
CTTGGAGGCACTCTTCAATGCAGTGGTCGTTGTCTTCTTGGCGAATTTTT
GGCTGGCCATGTA
BO01170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2712-PA | 1506 | CG2712-RA | 659..1503 | 863..19 | 4225 | 100 | Minus |
CG2711-PA | 1779 | dwg-RA | 1366..1392 | 387..361 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2712-RA | 1804 | CG2712-RA | 755..1606 | 863..12 | 4230 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2733556..2734204 | 660..12 | 3215 | 99.7 | Minus |
X | 23542271 | X | 2733283..2733485 | 863..661 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:03:51 has no hits.
BO01170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:56 Download gff for
BO01170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-PA | 660..1506 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:59 Download gff for
BO01170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-PA | 660..1506 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:43 Download gff for
BO01170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 756..1606 | 12..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:00 Download gff for
BO01170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 756..1606 | 12..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:00 Download gff for
BO01170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2733284..2733485 | 661..862 | 100 | -> | Minus |
X | 2733556..2734204 | 12..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:43 Download gff for
BO01170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2627317..2627518 | 661..862 | 100 | -> | Minus |
arm_X | 2627589..2628237 | 12..660 | 99 | | Minus |
BO01170.5prime Sequence
897 bp (776 high quality bases) assembled on 2005-11-30
> BO01170.5prime
GAAGTTATCAGTCGACATGACGACCATGTCGCCGCCGTCCCCCATGGACG
CCTTGTGCCGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTC
AAACCGCTCGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCAT
TTTAAGCTACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGC
CCCACCACATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAA
TTCAAGCGGAGTGTCCATCGCATGGACAGAATTCTGCGGCAGAGTCATGC
GGACTTTTGCCGCAGCAAAAAGATCAGCGCGGTGAATACTAGGGCCAGGC
TGTCAACCGAGATTCCGGAGGATTTTGTACTCGTGCTCGATGACCAGGAA
GTGACTGAATATCCAGCAGAAACGATACGAGATGAGGAGCAACTCCTGGT
CGTAGAATCAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGG
AGGAGAGGCTGGATATTGCACTGGAACAGCACGAAGACGATCTCTGCGAG
ATTGTCGACGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATC
CGAGCCAGCGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGC
GGACCTTTCAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAA
GAAGACAACGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTT
GCAGGCCAAAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAGCAC
AGACTTCGGCGACGCAGAAAACTTTGCCCAGTGGAAGCCGGGCCTTGGAA
ACCCCTCAATCCCTCCCTACAGTGTAAAATCTGTGGGAAAGCAACTA
BO01170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2712-PA | 1506 | CG2712-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
CG2712-PA | 1506 | CG2712-RA | 824..869 | 841..886 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2712-RA | 1804 | CG2712-RA | 96..975 | 16..897 | 4345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2732564..2733170 | 16..622 | 3035 | 100 | Plus |
X | 23542271 | X | 2733231..2733485 | 623..878 | 1230 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-04 18:47:57 has no hits.
BO01170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:57 Download gff for
BO01170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-PA | 1..878 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:01 Download gff for
BO01170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-PA | 1..878 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:32 Download gff for
BO01170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 87..974 | 3..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:32 Download gff for
BO01170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 87..974 | 3..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:32 Download gff for
BO01170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2732555..2733170 | 3..622 | 99 | -> | Plus |
X | 2733231..2733485 | 623..878 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:32 Download gff for
BO01170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2626588..2627203 | 3..622 | 99 | -> | Plus |
arm_X | 2627264..2627518 | 623..878 | 99 | -> | Plus |
BO01170.complete Sequence
1537 bp (1537 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629441
> BO01170.complete
GAAGTTATCAGTCGACATGACGACCATGTCGCCGCCGTCCCCCATGGACG
CCTTGTGCCGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTC
AAACCGCTCGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCAT
TTTAAGCTACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGC
CCCACCACATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAA
TTCAAGCGGAGTGTCCATCGCATGGACAGAATTCTGCGGCAGAGTCATGC
GGACTTTTGCCGCAGCAAAAAGATCAGCGCGGTGAATACTAGGGCCAGGC
TGTCAACCGAGATTCCGGAGGATTTTGTACTCGTGCTCGATGACCAGGAA
GTGACTGAATATCCAGCAGAAACGATACGAGATGAGGAGCAACTCCTGGT
CGTAGAATCAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGG
AGGAGAGGCTGGATATTGCACTGGAACAGCACGAAGACGATCTCTGCGAG
ATTGTCGACGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATC
CGAGCCAGCGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGC
GGACCTTTCAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAA
GAAGACAACGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTT
GCAGGCCAAAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAGCAC
AGACTTCGGCGACGCAGAAAACTTTGCCCAGTGGAAGCCGGCCTTGGAAA
CCCCTCAATCCCTCCCTACAGTGTAAAATCTGTGGCAAGCAACTAAGCAC
CAACAACTCCTTCAAGTACCATATGCAGCTACATGGCACGGCCACGCCCT
ACGTTTGCACAATCTGCGGAGAGTCCTTTAAGACGCGAAACGCCCGCGAC
GGCCATGTCACGCTGCACGATCGTAACAATCCGAACAGGTGCCCCACCTG
CTTCAAGGTCTACCGGCAGGCGTCCTCGCTGCGCACACACCTTCTAATCC
ACAGCGGAATCAAGCCATTCGAGTGCAGCATCTGCGGCAAGAGGCTAACA
CAGAAGTCGGGCTACAAGAAGCACATGCTCACCCACACGGGCGAGAAGCC
GCACGGCTGCGACATTTGCGGCCGTCGCTTCCGCTACTCGAGCAATCTGA
TTGCCCACAAGCGCTGCCACAGCCAGGAGAAGCCCCACCCGTGCCCGGTG
TGCCAGAAGCGCAGCTTCGGCAGCACATCCGAGCTCAACCGCCACATGCT
CGTCCACAGCAGCGAGCGACCGTTCGGCTGTGAGCAGTGCGGCAAGTCCT
TCAAGCGCCGCATCTCACTCGCCATCCATCGCCAGTCGCACAAGGCGGGC
AGACAGCGGAGGCGGGCCGAGCATGAAGTGGGTGTCCAACTGGAGGAGCA
GGACGAGAATGTGGAGACCGCAAGCTTTCTAGACCAT
BO01170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2712-RA | 1506 | CG2712-PA | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2712-RA | 1804 | CG2712-RA | 96..1606 | 16..1526 | 7525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2733556..2734204 | 878..1526 | 3215 | 99.7 | Plus |
X | 23542271 | X | 2732564..2733170 | 16..622 | 3035 | 100 | Plus |
X | 23542271 | X | 2733231..2733485 | 623..877 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:56:55 has no hits.
BO01170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:42 Download gff for
BO01170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 1..1506 | 17..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:33 Download gff for
BO01170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 178..1697 | 3..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:55 Download gff for
BO01170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 97..1599 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:42 Download gff for
BO01170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 178..1697 | 3..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:49 Download gff for
BO01170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2712-RA | 97..1599 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:49 Download gff for
BO01170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2732565..2733170 | 17..622 | 100 | -> | Plus |
X | 2733231..2733485 | 623..877 | 100 | -> | Plus |
X | 2733556..2734197 | 878..1521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:55 Download gff for
BO01170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2626598..2627203 | 17..622 | 100 | -> | Plus |
arm_X | 2627264..2627518 | 623..877 | 100 | -> | Plus |
arm_X | 2627589..2628230 | 878..1521 | 99 | | Plus |
BO01170.pep Sequence
Translation from 16 to 1537
> BO01170.pep
MTTMSPPSPMDALCRVCHTASPRCLPLFKPLDDPISGKPATLASILSYCS
GLEILEAELFLPHHICPDCVAKLRLSLEFKRSVHRMDRILRQSHADFCRS
KKISAVNTRARLSTEIPEDFVLVLDDQEVTEYPAETIRDEEQLLVVESDE
AESRLEAPIVQEERLDIALEQHEDDLCEIVDDPDPEQRRSRLERSEPALQ
CPICGKQLARKRTFQYHMRLHGQPKIRQEDNDHCIEECLQVEPVLQAKAG
EDVYEIVEKSAQTSATQKTLPSGSRPWKPLNPSLQCKICGKQLSTNNSFK
YHMQLHGTATPYVCTICGESFKTRNARDGHVTLHDRNNPNRCPTCFKVYR
QASSLRTHLLIHSGIKPFECSICGKRLTQKSGYKKHMLTHTGEKPHGCDI
CGRRFRYSSNLIAHKRCHSQEKPHPCPVCQKRSFGSTSELNRHMLVHSSE
RPFGCEQCGKSFKRRISLAIHRQSHKAGRQRRRAEHEVGVQLEEQDENVE
TASFLDH
BO01170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2712-PA | 501 | CG2712-PA | 1..501 | 1..501 | 2691 | 100 | Plus |
dwg-PA | 592 | CG2711-PA | 14..528 | 14..452 | 463 | 27.3 | Plus |
crol-PG | 878 | CG14938-PG | 293..588 | 187..483 | 397 | 29.2 | Plus |
crol-PB | 891 | CG14938-PB | 390..672 | 200..483 | 394 | 30.2 | Plus |
crol-PI | 962 | CG14938-PI | 390..672 | 200..483 | 394 | 30.2 | Plus |
crol-PB | 891 | CG14938-PB | 275..467 | 282..475 | 388 | 35.1 | Plus |
crol-PB | 891 | CG14938-PB | 293..579 | 187..475 | 385 | 29.4 | Plus |
crol-PB | 891 | CG14938-PB | 223..411 | 286..475 | 354 | 34.2 | Plus |
crol-PB | 891 | CG14938-PB | 409..683 | 191..462 | 350 | 29.9 | Plus |
crol-PG | 878 | CG14938-PG | 325..612 | 191..475 | 349 | 29.3 | Plus |
crol-PG | 878 | CG14938-PG | 275..474 | 282..482 | 346 | 32.3 | Plus |
crol-PG | 878 | CG14938-PG | 251..439 | 286..475 | 344 | 32.1 | Plus |
crol-PG | 878 | CG14938-PG | 223..411 | 286..475 | 336 | 33.7 | Plus |
crol-PG | 878 | CG14938-PG | 381..637 | 191..444 | 274 | 27 | Plus |
dwg-PA | 592 | CG2711-PA | 304..415 | 367..479 | 216 | 32.7 | Plus |
crol-PG | 878 | CG14938-PG | 437..649 | 191..427 | 213 | 25.2 | Plus |
dwg-PA | 592 | CG2711-PA | 240..542 | 123..381 | 177 | 23.8 | Plus |
crol-PG | 878 | CG14938-PG | 221..327 | 396..475 | 158 | 33.3 | Plus |