Clone BO01170 Report

Search the DGRC for BO01170

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG2712-RA
Protein status:BO01170.pep:
Sequenced Size:1537

Clone Sequence Records

BO01170.3prime Sequence

863 bp (760 high quality bases) assembled on 2005-11-30

> BO01170.3prime
ATGGTCTAGAAAGCTTGCGGTCTCCACATTCTCGTCCTGCTCCTCCAGTT
GGACACCCACTTCATGCTCGGCCCGCCTCCGCTGTCTGCCCGCCTTGTGC
GACTGGCGATGGATGGCGAGTGAGATGCGGCGCTTGAAGGACTTGCCGCA
CTGCTCACAGCCGAACGGTCGCTCGCTGCTGTGGACGAGCATGTGGCGGT
TGAGCTCGGATGTGCTGCCGAAGCTGCGCTTCTGGCACACCGGGCACGGG
TGGGGCTTCTCCTGGCTGTGGCAGCGCTTGTGGGCAATCAGATTGCTCGA
GTAGCGGAAGCGACGGCCGCAAATGTCGCAGCCGTGCGGCTTCTCGCCCG
TGTGGGTGAGCATGTGCTTCTTGTAGCCCGACTTCTGTGTTAGCCTCTTG
CCGCAGATGCTGCACTCGAATGGCTTGATTCCGCTGTGGATTAGAAGGTG
TGTGCGCAGCGAGGACGCCTGCCGGTAGACCTTGAAGCAGGTGGGGCACC
TGTTCGGATTGTTACGATCGTGCAGCGTGACATGGCCGTCGCGGGCGTTT
CGCGTCTTAAAGGACTCTCCGCAGATTGTGCAAACGTAGGGCGTGGCCGT
GCCATGTAGCTGCATATGGTACTTGAAGGAGTTGTTGGTGCTTAGTTGCT
TGCCACAGATTTTACACTGTAGGGAGGGATTGAGGGGTTTCCAAGGCCGG
CTTCCACTGGGCAAAGTTTTCTGCGTCGCCGAAGTCTGTGCTGATTTCTC
CACAATCTCGTAGACATCTTCGCCAGCTTTGGCCTGCAAAACGGGCTCCA
CTTGGAGGCACTCTTCAATGCAGTGGTCGTTGTCTTCTTGGCGAATTTTT
GGCTGGCCATGTA

BO01170.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 1506 CG2712-RA 659..1503 863..19 4225 100 Minus
CG2711-PA 1779 dwg-RA 1366..1392 387..361 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 755..1606 863..12 4230 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2733556..2734204 660..12 3215 99.7 Minus
X 23542271 X 2733283..2733485 863..661 1015 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:03:51 has no hits.

BO01170.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:56 Download gff for BO01170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 660..1506 16..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:19:59 Download gff for BO01170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 660..1506 16..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:43 Download gff for BO01170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 756..1606 12..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:00 Download gff for BO01170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 756..1606 12..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:00 Download gff for BO01170.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2733284..2733485 661..862 100 -> Minus
X 2733556..2734204 12..660 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:43 Download gff for BO01170.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2627317..2627518 661..862 100 -> Minus
arm_X 2627589..2628237 12..660 99   Minus

BO01170.5prime Sequence

897 bp (776 high quality bases) assembled on 2005-11-30

> BO01170.5prime
GAAGTTATCAGTCGACATGACGACCATGTCGCCGCCGTCCCCCATGGACG
CCTTGTGCCGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTC
AAACCGCTCGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCAT
TTTAAGCTACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGC
CCCACCACATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAA
TTCAAGCGGAGTGTCCATCGCATGGACAGAATTCTGCGGCAGAGTCATGC
GGACTTTTGCCGCAGCAAAAAGATCAGCGCGGTGAATACTAGGGCCAGGC
TGTCAACCGAGATTCCGGAGGATTTTGTACTCGTGCTCGATGACCAGGAA
GTGACTGAATATCCAGCAGAAACGATACGAGATGAGGAGCAACTCCTGGT
CGTAGAATCAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGG
AGGAGAGGCTGGATATTGCACTGGAACAGCACGAAGACGATCTCTGCGAG
ATTGTCGACGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATC
CGAGCCAGCGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGC
GGACCTTTCAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAA
GAAGACAACGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTT
GCAGGCCAAAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAGCAC
AGACTTCGGCGACGCAGAAAACTTTGCCCAGTGGAAGCCGGGCCTTGGAA
ACCCCTCAATCCCTCCCTACAGTGTAAAATCTGTGGGAAAGCAACTA

BO01170.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 1506 CG2712-RA 1..825 17..841 4125 100 Plus
CG2712-PA 1506 CG2712-RA 824..869 841..886 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 96..975 16..897 4345 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2732564..2733170 16..622 3035 100 Plus
X 23542271 X 2733231..2733485 623..878 1230 99.6 Plus
Blast to na_te.dros performed on 2015-02-04 18:47:57 has no hits.

BO01170.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:24:57 Download gff for BO01170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 1..878 17..896 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:01 Download gff for BO01170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-PA 1..878 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:11:32 Download gff for BO01170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 87..974 3..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:26:32 Download gff for BO01170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 87..974 3..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:26:32 Download gff for BO01170.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2732555..2733170 3..622 99 -> Plus
X 2733231..2733485 623..878 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:11:32 Download gff for BO01170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2626588..2627203 3..622 99 -> Plus
arm_X 2627264..2627518 623..878 99 -> Plus

BO01170.complete Sequence

1537 bp (1537 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629441

> BO01170.complete
GAAGTTATCAGTCGACATGACGACCATGTCGCCGCCGTCCCCCATGGACG
CCTTGTGCCGCGTGTGCCACACAGCATCGCCGCGCTGCCTGCCGCTCTTC
AAACCGCTCGACGATCCAATTTCCGGCAAACCAGCGACGCTGGCCAGCAT
TTTAAGCTACTGCAGCGGTCTGGAGATCCTAGAGGCGGAGCTCTTCCTGC
CCCACCACATCTGCCCGGACTGCGTGGCCAAGTTGCGGCTCTCGCTGGAA
TTCAAGCGGAGTGTCCATCGCATGGACAGAATTCTGCGGCAGAGTCATGC
GGACTTTTGCCGCAGCAAAAAGATCAGCGCGGTGAATACTAGGGCCAGGC
TGTCAACCGAGATTCCGGAGGATTTTGTACTCGTGCTCGATGACCAGGAA
GTGACTGAATATCCAGCAGAAACGATACGAGATGAGGAGCAACTCCTGGT
CGTAGAATCAGATGAGGCGGAGAGCCGGCTGGAAGCGCCAATTGTACAGG
AGGAGAGGCTGGATATTGCACTGGAACAGCACGAAGACGATCTCTGCGAG
ATTGTCGACGATCCGGATCCGGAGCAACGTAGGAGCAGGTTAGAAAGATC
CGAGCCAGCGCTGCAATGTCCCATTTGCGGCAAACAACTGGCTAGGAAGC
GGACCTTTCAGTACCACATGAGGCTACATGGCCAGCCAAAAATTCGCCAA
GAAGACAACGACCACTGCATTGAAGAGTGCCTCCAAGTGGAGCCCGTTTT
GCAGGCCAAAGCTGGCGAAGATGTCTACGAGATTGTGGAGAAATCAGCAC
AGACTTCGGCGACGCAGAAAACTTTGCCCAGTGGAAGCCGGCCTTGGAAA
CCCCTCAATCCCTCCCTACAGTGTAAAATCTGTGGCAAGCAACTAAGCAC
CAACAACTCCTTCAAGTACCATATGCAGCTACATGGCACGGCCACGCCCT
ACGTTTGCACAATCTGCGGAGAGTCCTTTAAGACGCGAAACGCCCGCGAC
GGCCATGTCACGCTGCACGATCGTAACAATCCGAACAGGTGCCCCACCTG
CTTCAAGGTCTACCGGCAGGCGTCCTCGCTGCGCACACACCTTCTAATCC
ACAGCGGAATCAAGCCATTCGAGTGCAGCATCTGCGGCAAGAGGCTAACA
CAGAAGTCGGGCTACAAGAAGCACATGCTCACCCACACGGGCGAGAAGCC
GCACGGCTGCGACATTTGCGGCCGTCGCTTCCGCTACTCGAGCAATCTGA
TTGCCCACAAGCGCTGCCACAGCCAGGAGAAGCCCCACCCGTGCCCGGTG
TGCCAGAAGCGCAGCTTCGGCAGCACATCCGAGCTCAACCGCCACATGCT
CGTCCACAGCAGCGAGCGACCGTTCGGCTGTGAGCAGTGCGGCAAGTCCT
TCAAGCGCCGCATCTCACTCGCCATCCATCGCCAGTCGCACAAGGCGGGC
AGACAGCGGAGGCGGGCCGAGCATGAAGTGGGTGTCCAACTGGAGGAGCA
GGACGAGAATGTGGAGACCGCAAGCTTTCTAGACCAT

BO01170.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1506 CG2712-PA 1..1503 17..1519 7515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-RA 1804 CG2712-RA 96..1606 16..1526 7525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2733556..2734204 878..1526 3215 99.7 Plus
X 23542271 X 2732564..2733170 16..622 3035 100 Plus
X 23542271 X 2733231..2733485 623..877 1275 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:56:55 has no hits.

BO01170.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:42 Download gff for BO01170.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 1..1506 17..1522 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:33 Download gff for BO01170.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 178..1697 3..1526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:55 Download gff for BO01170.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 97..1599 17..1521 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:42 Download gff for BO01170.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 178..1697 3..1526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:49 Download gff for BO01170.complete
Subject Subject Range Query Range Percent Splice Strand
CG2712-RA 97..1599 17..1521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:49 Download gff for BO01170.complete
Subject Subject Range Query Range Percent Splice Strand
X 2732565..2733170 17..622 100 -> Plus
X 2733231..2733485 623..877 100 -> Plus
X 2733556..2734197 878..1521 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:55 Download gff for BO01170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2626598..2627203 17..622 100 -> Plus
arm_X 2627264..2627518 623..877 100 -> Plus
arm_X 2627589..2628230 878..1521 99   Plus

BO01170.pep Sequence

Translation from 16 to 1537

> BO01170.pep
MTTMSPPSPMDALCRVCHTASPRCLPLFKPLDDPISGKPATLASILSYCS
GLEILEAELFLPHHICPDCVAKLRLSLEFKRSVHRMDRILRQSHADFCRS
KKISAVNTRARLSTEIPEDFVLVLDDQEVTEYPAETIRDEEQLLVVESDE
AESRLEAPIVQEERLDIALEQHEDDLCEIVDDPDPEQRRSRLERSEPALQ
CPICGKQLARKRTFQYHMRLHGQPKIRQEDNDHCIEECLQVEPVLQAKAG
EDVYEIVEKSAQTSATQKTLPSGSRPWKPLNPSLQCKICGKQLSTNNSFK
YHMQLHGTATPYVCTICGESFKTRNARDGHVTLHDRNNPNRCPTCFKVYR
QASSLRTHLLIHSGIKPFECSICGKRLTQKSGYKKHMLTHTGEKPHGCDI
CGRRFRYSSNLIAHKRCHSQEKPHPCPVCQKRSFGSTSELNRHMLVHSSE
RPFGCEQCGKSFKRRISLAIHRQSHKAGRQRRRAEHEVGVQLEEQDENVE
TASFLDH

BO01170.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2712-PA 501 CG2712-PA 1..501 1..501 2691 100 Plus
dwg-PA 592 CG2711-PA 14..528 14..452 463 27.3 Plus
crol-PG 878 CG14938-PG 293..588 187..483 397 29.2 Plus
crol-PB 891 CG14938-PB 390..672 200..483 394 30.2 Plus
crol-PI 962 CG14938-PI 390..672 200..483 394 30.2 Plus
crol-PB 891 CG14938-PB 275..467 282..475 388 35.1 Plus
crol-PB 891 CG14938-PB 293..579 187..475 385 29.4 Plus
crol-PB 891 CG14938-PB 223..411 286..475 354 34.2 Plus
crol-PB 891 CG14938-PB 409..683 191..462 350 29.9 Plus
crol-PG 878 CG14938-PG 325..612 191..475 349 29.3 Plus
crol-PG 878 CG14938-PG 275..474 282..482 346 32.3 Plus
crol-PG 878 CG14938-PG 251..439 286..475 344 32.1 Plus
crol-PG 878 CG14938-PG 223..411 286..475 336 33.7 Plus
crol-PG 878 CG14938-PG 381..637 191..444 274 27 Plus
dwg-PA 592 CG2711-PA 304..415 367..479 216 32.7 Plus
crol-PG 878 CG14938-PG 437..649 191..427 213 25.2 Plus
dwg-PA 592 CG2711-PA 240..542 123..381 177 23.8 Plus
crol-PG 878 CG14938-PG 221..327 396..475 158 33.3 Plus