Clone BO01176 Report

Search the DGRC for BO01176

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptSide-RA
Protein status:BO01176.pep:
Sequenced Size:1555

Clone Sequence Records

BO01176.3prime Sequence

886 bp (753 high quality bases) assembled on 2005-11-30

> BO01176.3prime
ATGGTCTAGAAAGCTTGCCCAGGGTCGCCACATGCTCTCATCTTGCCCAG
CTGCTGCTGCAGCAGCTGCCGCCTGGGCCATGTAGTGATACTCCTCCTCC
TGGCGTTGCCTTAGAGCCTGACGAGCGGCGTTGCTTGTCTGGGGTCGCGG
ACTGGTCGCCGGAGCCTCGTTCTCATTGGAACCGATGCCACTCTCGGATC
TTGGTGAGGATTGCTGCGTGGCGGGCATGGACTTCAGTTCCGACATCGAG
ACGCCGGAACTGACAGACGCTGCCACCGAGGCAGGTCTCTCTTGGTGCAC
CGTTGGCGTTCCGGCACCGGAAGTAGCCATTGCCGCAACTGAGGCTCCTG
CTGAAGCGGCCACAGCCATGCTGTTGGCATAAGCCGCTGCTGCGGCAGCG
ACATGGGCAGCCTCCAAGCCTCCCGGAAAACTGGGACTCAACTTGCCGGC
CAAATGTGGTTGAACCCGTTGCAACTCTATCAACCGCTCAAAATCCGTTC
GGGTAGCAATCGGATCCACCAGCGGCTGGGCACTAAGGCCAAGGGCCGCT
GCCAGCTGGACATAGTGGGGCGGCAGGACCAGGACTCCGTTGGCGGACTC
TGGTTGCTGCTGCACGTGCGCCTTAAGCTGTTGCTTGTACTGCTCCAGGA
CATTGGCGCACACCTTGTTGCGATCCTCCTCGTAGCTCAGCTCGCTGGGA
GCGACGGCATCTACATGCGGCGACGTCTGGCCTTGTGTCTGGCTTTGCAC
CTGTATTGGTATCGGAGTTTGCGCCTGCGCCTGGAGTCCACGATTGTTGT
TCTCATCCTGGGGTGCTGGCGTGACGGGCAGCGTCCTCTGCTCAGCGGCT
ACCATTTTCAGACCCTTGCTGTAGTCCACTGGATTC

BO01176.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10446-PA 1524 Side-RA 654..1521 886..19 4340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 2188 CG10446-RA 1001..1868 886..19 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19029593..19030460 886..19 4340 100 Minus
Blast to na_te.dros performed 2015-02-12 10:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6847 648..598 111 68.6 Minus

BO01176.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:02 Download gff for BO01176.3prime
Subject Subject Range Query Range Percent Splice Strand
Side-PA 654..1524 16..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:08 Download gff for BO01176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10446-PA 654..1524 16..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:45 Download gff for BO01176.3prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 1001..1873 13..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:57 Download gff for BO01176.3prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 1001..1873 13..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:57 Download gff for BO01176.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19029593..19030465 13..886 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:45 Download gff for BO01176.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19029593..19030465 13..886 99   Minus

BO01176.5prime Sequence

815 bp (695 high quality bases) assembled on 2005-11-30

> BO01176.5prime
GAAGTTATCAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAA
ATAAATCAGCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGC
AGCGGCATAAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTC
GTCGCAGGACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCC
GGCGGGCGCGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTC
GAGTCCACCAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCA
CACCAAGCTGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTC
AGCGGCATCGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGT
TACACGGACTGCGCTCGCGAGGTGGCTCGTTACCTGGCCACCCCGGAACC
GCCGCCCATGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGC
GACTGCTGCGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATC
TGTCCCCATTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTG
CTTCGACCTGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGG
ACTACAGCAGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAA
ATGGTAGCCGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGA
TGAGAAACACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAA
TACAGGTGCAAAGCC

BO01176.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10446-PA 1524 Side-RA 1..799 17..815 3945 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 2188 CG10446-RA 348..1146 17..815 3965 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19029301..19029738 378..815 2160 99.5 Plus
2L 23513712 2L 19028800..19029112 65..377 1565 100 Plus
2L 23513712 2L 19028057..19028106 17..66 250 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:42:58 has no hits.

BO01176.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:02 Download gff for BO01176.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-PA 1..799 17..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:10 Download gff for BO01176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10446-PA 1..799 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:06 Download gff for BO01176.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 343..1146 10..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:58 Download gff for BO01176.5prime
Subject Subject Range Query Range Percent Splice Strand
Side-RA 343..1146 10..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:58 Download gff for BO01176.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19029301..19029738 378..815 99   Plus
2L 19028052..19028105 10..65 92 -> Plus
2L 19028801..19029112 66..377 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:06 Download gff for BO01176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19028052..19028105 10..65 92 -> Plus
arm_2L 19028801..19029112 66..377 100 -> Plus
arm_2L 19029301..19029738 378..815 99   Plus

BO01176.complete Sequence

1555 bp (1555 high quality bases) assembled on 2005-06-24

GenBank Submission: KX796818

> BO01176.complete
GAAGTTATCAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAA
ATAAATCAGCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGC
AGCGGCATAAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTC
GTCGCAGGACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCC
GGCGGGCGCGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTC
GAGTCCACCAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCA
CACCAAGCTGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTC
AGCGGCATCGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGT
TACACGGACTGCGCTCGCGAGGTGGCTCGTTACCTGGCCACCCCGGAACC
GCCGCCCATGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGC
GACTGCTGCGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATC
TGTCCCCATTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTG
CTTCGACCTGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGG
ACTACAGCAGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAA
ATGGTAGCCGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGA
TGAGAACAACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAA
TACAGGTGCAAAGCCAGACACAAGGCCAGACGTCGCCGCATGTAGATGCC
GTCGCTCCCAGCGAGCTGAGCTACGAGGAGGATCGCAACAAGGTGTGCGC
CAATGTCCTGGAGCAGTACAAGCAACAGCTTAAGGCGCACGTGCAGCAGC
AACCAGAGTCCGCCAACGGAGTCCTGGTCCTGCCGCCCCACTATGTCCAG
CTGGCAGCGGCCCTTGGCCTTAGTGCCCAGCCGCTGGTGGATCCGATTGC
TACCCGAACGGATTTTGAGCGGTTGATAGAGTTGCAACGGGTTCAACCAC
ATTTGGCCGGCAAGTTGAGTCCCAGTTTTCCGGGAGGCTTGGAGGCTGCC
CATGTCGCTGCCGCAGCAGCGGCTTATGCCAACAGCATGGCTGTGGCCGC
TTCAGCAGGAGCCTCAGTTGCGGCAATGGCTACTTCCGGTGCCGGAACGC
CAACGGTGCACCAAGAGAGACCTGCCTCGGTGGCAGCGTCTGTCAGTTCC
GGCGTCTCGATGTCGGAACTGAAGTCCATGCCCGCCACGCAGCAATCCTC
ACCAAGATCCGAGAGTGGCATCGGTTCCAATGAGAACGAGGCTCCGGCGA
CCAGTCCGCGACCCCAGACAAGCAACGCCGCTCGTCAGGCTCTAAGGCAA
CGCCAGGAGGAGGAGTATCACTACATGGCCCAGGCGGCAGCTGCTGCAGC
AGCAGCTGGGCAAGATGAGAGCATGTGGCGACCCTGGGCAAGCTTTCTAG
ACCAT

BO01176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 1524 CG10446-PA 1..1521 17..1537 7605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Side-RA 2188 CG10446-RA 348..1868 17..1537 7605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19029301..19030460 378..1537 5800 100 Plus
2L 23513712 2L 19028800..19029112 65..377 1565 100 Plus
2L 23513712 2L 19028057..19028106 17..66 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:04:21 has no hits.

BO01176.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:14 Download gff for BO01176.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 1..1524 17..1540 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:18 Download gff for BO01176.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 341..1871 10..1543 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:11 Download gff for BO01176.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 348..1868 17..1539 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:14 Download gff for BO01176.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 341..1871 10..1543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:46 Download gff for BO01176.complete
Subject Subject Range Query Range Percent Splice Strand
Side-RA 348..1868 17..1539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:46 Download gff for BO01176.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19028057..19028105 17..65 100 -> Plus
2L 19028801..19029112 66..377 100 -> Plus
2L 19029301..19030460 378..1539 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:11 Download gff for BO01176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19028057..19028105 17..65 100 -> Plus
arm_2L 19028801..19029112 66..377 100 -> Plus
arm_2L 19029301..19030460 378..1539 99   Plus

BO01176.pep Sequence

Translation from 16 to 1555

> BO01176.pep
MTAKRDKDYSKNKSAPGIGFTAAGSTNGSGIKSIGLVSSTQNVTSSQDIS
KRTNKPLMEKRRRARINQSLAILKALILESTKTQNAKNGEGQAKHTKLEK
ADILELTVRHFQRHRNLDDPTVNKYRAGYTDCAREVARYLATPEPPPMGT
MPTLAEPGSKARLLRHLDQCIAEIDVEICPHSTAAFAESPSSSSCFDLNH
GKKSQPEEHSLDYSSQDSNPVDYSKGLKMVAAEQRTLPVTPAPQDENNNR
GLQAQAQTPIPIQVQSQTQGQTSPHVDAVAPSELSYEEDRNKVCANVLEQ
YKQQLKAHVQQQPESANGVLVLPPHYVQLAAALGLSAQPLVDPIATRTDF
ERLIELQRVQPHLAGKLSPSFPGGLEAAHVAAAAAAYANSMAVAASAGAS
VAAMATSGAGTPTVHQERPASVAASVSSGVSMSELKSMPATQQSSPRSES
GIGSNENEAPATSPRPQTSNAARQALRQRQEEEYHYMAQAAAAAAAAGQD
ESMWRPWASFLDH

BO01176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Side-PA 507 CG10446-PA 1..507 1..507 2575 100 Plus
h-PB 337 CG6494-PB 4..290 19..388 282 27.8 Plus
h-PA 337 CG6494-PA 4..290 19..388 282 27.8 Plus
dpn-PA 435 CG8704-PA 41..435 51..507 238 24.9 Plus
Hey-PA 425 CG11194-PA 95..329 45..275 163 25.9 Plus