Clone Sequence Records
BO01176.3prime Sequence
886 bp (753 high quality bases) assembled on 2005-11-30
> BO01176.3prime
ATGGTCTAGAAAGCTTGCCCAGGGTCGCCACATGCTCTCATCTTGCCCAG
CTGCTGCTGCAGCAGCTGCCGCCTGGGCCATGTAGTGATACTCCTCCTCC
TGGCGTTGCCTTAGAGCCTGACGAGCGGCGTTGCTTGTCTGGGGTCGCGG
ACTGGTCGCCGGAGCCTCGTTCTCATTGGAACCGATGCCACTCTCGGATC
TTGGTGAGGATTGCTGCGTGGCGGGCATGGACTTCAGTTCCGACATCGAG
ACGCCGGAACTGACAGACGCTGCCACCGAGGCAGGTCTCTCTTGGTGCAC
CGTTGGCGTTCCGGCACCGGAAGTAGCCATTGCCGCAACTGAGGCTCCTG
CTGAAGCGGCCACAGCCATGCTGTTGGCATAAGCCGCTGCTGCGGCAGCG
ACATGGGCAGCCTCCAAGCCTCCCGGAAAACTGGGACTCAACTTGCCGGC
CAAATGTGGTTGAACCCGTTGCAACTCTATCAACCGCTCAAAATCCGTTC
GGGTAGCAATCGGATCCACCAGCGGCTGGGCACTAAGGCCAAGGGCCGCT
GCCAGCTGGACATAGTGGGGCGGCAGGACCAGGACTCCGTTGGCGGACTC
TGGTTGCTGCTGCACGTGCGCCTTAAGCTGTTGCTTGTACTGCTCCAGGA
CATTGGCGCACACCTTGTTGCGATCCTCCTCGTAGCTCAGCTCGCTGGGA
GCGACGGCATCTACATGCGGCGACGTCTGGCCTTGTGTCTGGCTTTGCAC
CTGTATTGGTATCGGAGTTTGCGCCTGCGCCTGGAGTCCACGATTGTTGT
TCTCATCCTGGGGTGCTGGCGTGACGGGCAGCGTCCTCTGCTCAGCGGCT
ACCATTTTCAGACCCTTGCTGTAGTCCACTGGATTC
BO01176.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10446-PA | 1524 | Side-RA | 654..1521 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Side-RA | 2188 | CG10446-RA | 1001..1868 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19029593..19030460 | 886..19 | 4340 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6847 | 648..598 | 111 | 68.6 | Minus |
BO01176.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:02 Download gff for
BO01176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-PA | 654..1524 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:08 Download gff for
BO01176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10446-PA | 654..1524 | 16..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:45 Download gff for
BO01176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 1001..1873 | 13..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:57 Download gff for
BO01176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 1001..1873 | 13..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:57 Download gff for
BO01176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19029593..19030465 | 13..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:45 Download gff for
BO01176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19029593..19030465 | 13..886 | 99 | | Minus |
BO01176.5prime Sequence
815 bp (695 high quality bases) assembled on 2005-11-30
> BO01176.5prime
GAAGTTATCAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAA
ATAAATCAGCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGC
AGCGGCATAAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTC
GTCGCAGGACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCC
GGCGGGCGCGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTC
GAGTCCACCAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCA
CACCAAGCTGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTC
AGCGGCATCGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGT
TACACGGACTGCGCTCGCGAGGTGGCTCGTTACCTGGCCACCCCGGAACC
GCCGCCCATGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGC
GACTGCTGCGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATC
TGTCCCCATTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTG
CTTCGACCTGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGG
ACTACAGCAGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAA
ATGGTAGCCGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGA
TGAGAAACACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAA
TACAGGTGCAAAGCC
BO01176.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10446-PA | 1524 | Side-RA | 1..799 | 17..815 | 3945 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Side-RA | 2188 | CG10446-RA | 348..1146 | 17..815 | 3965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19029301..19029738 | 378..815 | 2160 | 99.5 | Plus |
2L | 23513712 | 2L | 19028800..19029112 | 65..377 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 19028057..19028106 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:42:58 has no hits.
BO01176.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:02 Download gff for
BO01176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-PA | 1..799 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:10 Download gff for
BO01176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10446-PA | 1..799 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:32:06 Download gff for
BO01176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 343..1146 | 10..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:58 Download gff for
BO01176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 343..1146 | 10..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:58 Download gff for
BO01176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19029301..19029738 | 378..815 | 99 | | Plus |
2L | 19028052..19028105 | 10..65 | 92 | -> | Plus |
2L | 19028801..19029112 | 66..377 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:32:06 Download gff for
BO01176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19028052..19028105 | 10..65 | 92 | -> | Plus |
arm_2L | 19028801..19029112 | 66..377 | 100 | -> | Plus |
arm_2L | 19029301..19029738 | 378..815 | 99 | | Plus |
BO01176.complete Sequence
1555 bp (1555 high quality bases) assembled on 2005-06-24
GenBank Submission: KX796818
> BO01176.complete
GAAGTTATCAGTCGACATGACAGCAAAACGTGATAAGGATTACTCAAAAA
ATAAATCAGCACCTGGCATCGGATTCACCGCCGCCGGCTCAACTAATGGC
AGCGGCATAAAGTCCATCGGGCTGGTGAGCTCAACGCAGAATGTGACTTC
GTCGCAGGACATCAGCAAGCGGACAAACAAACCACTCATGGAGAAGCGCC
GGCGGGCGCGAATCAACCAGAGCCTGGCCATCCTGAAGGCCCTCATCCTC
GAGTCCACCAAGACCCAAAATGCCAAGAACGGCGAGGGCCAGGCGAAGCA
CACCAAGCTGGAGAAGGCGGACATCCTGGAGCTAACCGTTCGCCACTTTC
AGCGGCATCGCAATCTCGACGATCCCACGGTTAACAAATACAGAGCTGGT
TACACGGACTGCGCTCGCGAGGTGGCTCGTTACCTGGCCACCCCGGAACC
GCCGCCCATGGGCACCATGCCCACCTTGGCGGAGCCCGGCTCCAAGGCGC
GACTGCTGCGCCACCTGGACCAGTGCATAGCCGAGATCGACGTGGAGATC
TGTCCCCATTCGACGGCCGCGTTTGCCGAAAGCCCCAGCAGTAGCAGTTG
CTTCGACCTGAATCACGGGAAGAAGTCGCAGCCCGAGGAGCATTCGCTGG
ACTACAGCAGCCAGGATTCGAATCCAGTGGACTACAGCAAGGGTCTGAAA
ATGGTAGCCGCTGAGCAGAGGACGCTGCCCGTCACGCCAGCACCCCAGGA
TGAGAACAACAATCGTGGACTCCAGGCGCAGGCGCAAACTCCGATACCAA
TACAGGTGCAAAGCCAGACACAAGGCCAGACGTCGCCGCATGTAGATGCC
GTCGCTCCCAGCGAGCTGAGCTACGAGGAGGATCGCAACAAGGTGTGCGC
CAATGTCCTGGAGCAGTACAAGCAACAGCTTAAGGCGCACGTGCAGCAGC
AACCAGAGTCCGCCAACGGAGTCCTGGTCCTGCCGCCCCACTATGTCCAG
CTGGCAGCGGCCCTTGGCCTTAGTGCCCAGCCGCTGGTGGATCCGATTGC
TACCCGAACGGATTTTGAGCGGTTGATAGAGTTGCAACGGGTTCAACCAC
ATTTGGCCGGCAAGTTGAGTCCCAGTTTTCCGGGAGGCTTGGAGGCTGCC
CATGTCGCTGCCGCAGCAGCGGCTTATGCCAACAGCATGGCTGTGGCCGC
TTCAGCAGGAGCCTCAGTTGCGGCAATGGCTACTTCCGGTGCCGGAACGC
CAACGGTGCACCAAGAGAGACCTGCCTCGGTGGCAGCGTCTGTCAGTTCC
GGCGTCTCGATGTCGGAACTGAAGTCCATGCCCGCCACGCAGCAATCCTC
ACCAAGATCCGAGAGTGGCATCGGTTCCAATGAGAACGAGGCTCCGGCGA
CCAGTCCGCGACCCCAGACAAGCAACGCCGCTCGTCAGGCTCTAAGGCAA
CGCCAGGAGGAGGAGTATCACTACATGGCCCAGGCGGCAGCTGCTGCAGC
AGCAGCTGGGCAAGATGAGAGCATGTGGCGACCCTGGGCAAGCTTTCTAG
ACCAT
BO01176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Side-RA | 1524 | CG10446-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Side-RA | 2188 | CG10446-RA | 348..1868 | 17..1537 | 7605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19029301..19030460 | 378..1537 | 5800 | 100 | Plus |
2L | 23513712 | 2L | 19028800..19029112 | 65..377 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 19028057..19028106 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:04:21 has no hits.
BO01176.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:14 Download gff for
BO01176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 1..1524 | 17..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:18 Download gff for
BO01176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 341..1871 | 10..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:11 Download gff for
BO01176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 348..1868 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:14 Download gff for
BO01176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 341..1871 | 10..1543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:46 Download gff for
BO01176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Side-RA | 348..1868 | 17..1539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:46 Download gff for
BO01176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19028057..19028105 | 17..65 | 100 | -> | Plus |
2L | 19028801..19029112 | 66..377 | 100 | -> | Plus |
2L | 19029301..19030460 | 378..1539 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:11 Download gff for
BO01176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19028057..19028105 | 17..65 | 100 | -> | Plus |
arm_2L | 19028801..19029112 | 66..377 | 100 | -> | Plus |
arm_2L | 19029301..19030460 | 378..1539 | 99 | | Plus |
BO01176.pep Sequence
Translation from 16 to 1555
> BO01176.pep
MTAKRDKDYSKNKSAPGIGFTAAGSTNGSGIKSIGLVSSTQNVTSSQDIS
KRTNKPLMEKRRRARINQSLAILKALILESTKTQNAKNGEGQAKHTKLEK
ADILELTVRHFQRHRNLDDPTVNKYRAGYTDCAREVARYLATPEPPPMGT
MPTLAEPGSKARLLRHLDQCIAEIDVEICPHSTAAFAESPSSSSCFDLNH
GKKSQPEEHSLDYSSQDSNPVDYSKGLKMVAAEQRTLPVTPAPQDENNNR
GLQAQAQTPIPIQVQSQTQGQTSPHVDAVAPSELSYEEDRNKVCANVLEQ
YKQQLKAHVQQQPESANGVLVLPPHYVQLAAALGLSAQPLVDPIATRTDF
ERLIELQRVQPHLAGKLSPSFPGGLEAAHVAAAAAAYANSMAVAASAGAS
VAAMATSGAGTPTVHQERPASVAASVSSGVSMSELKSMPATQQSSPRSES
GIGSNENEAPATSPRPQTSNAARQALRQRQEEEYHYMAQAAAAAAAAGQD
ESMWRPWASFLDH
BO01176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Side-PA | 507 | CG10446-PA | 1..507 | 1..507 | 2575 | 100 | Plus |
h-PB | 337 | CG6494-PB | 4..290 | 19..388 | 282 | 27.8 | Plus |
h-PA | 337 | CG6494-PA | 4..290 | 19..388 | 282 | 27.8 | Plus |
dpn-PA | 435 | CG8704-PA | 41..435 | 51..507 | 238 | 24.9 | Plus |
Hey-PA | 425 | CG11194-PA | 95..329 | 45..275 | 163 | 25.9 | Plus |