Clone BO01177 Report

Search the DGRC for BO01177

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG10274-RA
Protein status:BO01177.pep:
Sequenced Size:1576

Clone Sequence Records

BO01177.3prime Sequence

818 bp (763 high quality bases) assembled on 2005-11-30

> BO01177.3prime
ATGGTCTAGAAAGCTTGCGACATGATCGATTTTTAAAGCATCCAAAGTGG
TGCCATCGGCATGTGCTTTTTGAGCGTAGTAGCCATCGTAGGAGCTTTGC
GCCTTGTCAACCTCCTGCTGATGCTGCAACAGTTGCAGTTGCTCGTAGGC
AGCCTCCTGAACCTTGCGGCGCTCCTCCTCCGCCAGTCGCTTTACTTCGT
TCTCTTCAAACTGCTGCGCCTGGAGTTCAGCGGATGCCGCTGCTCGCTCC
GCCGCTGCCTCCTGGTACTCATCGTAGGAGTGCAGGCTGCGGTCACTACT
TTCAAGCTTGTGCAGCGACGATAGCTGCTCCTTGGCCGCCTCCGCAATTT
CGCGCCGCTTCGCATCCGCCTGGCGCTTCGCCTCTCGCTTGCTGCGTTCC
TGCTCTTCCAGCTCCTCGCGAGCGGCATAAAACTTGGGCGAAATGACGGG
TGGACGGTTCTCGTGGGTGCGCTGGTGGCGCTTCAGCGCCGTCTCCTGGC
GGAAATGGGTGCCGCAGGTCTTGCACTCAAAGGGTTTCTCGCCCGTATGA
ATCCACTCGTGATGCCTCAACGTTTGAGCCTTTGCGAATCTTTTGGGGCA
AAAGCGGCAGGCAAAATCTTTGACCTTTTCGTGGATGATCTTATAGTGCC
GCTTCATGTTTCCGATATTGTTGAATCCCTGACCACAACCGGGGCAGATA
TGTTTGCCCTCCTTCTTGGTAAAGTTCACCTGCGGCGACCACGACGGCAC
TGAAACAGAGGGTATGGGGTTCACAGCAGTGCCAGCCAACTGCGCCAGAT
CCACTCGTTGTACACGGC

BO01177.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-PA 1545 CG10274-RA 743..1542 818..19 4000 100 Minus
CG10270-PA 2325 D19B-RA 1708..1760 744..692 165 92.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 3034 CG10274-RB 1852..2651 818..19 4000 100 Minus
D19A-RA 3233 CG10269-RA 2002..2313 792..481 660 80.8 Minus
D19B-RA 2685 CG10270-RA 1822..2078 749..493 370 77.7 Minus
D19A-RA 3233 CG10269-RA 2429..2679 269..19 235 73.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6179060..6179859 19..818 4000 100 Plus
3L 28110227 3L 6186750..6187061 481..792 660 80.8 Plus
3L 28110227 3L 6182783..6183039 493..749 370 76.3 Plus
3L 28110227 3L 6191484..6191682 683..485 260 75.4 Minus
3L 28110227 3L 6186384..6186634 19..269 235 72.9 Plus
3L 28110227 3L 6182523..6182650 140..267 190 76.6 Plus
Blast to na_te.dros performed 2015-02-10 15:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3267..3310 159..116 112 72.7 Minus

BO01177.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:03 Download gff for BO01177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 743..1545 16..818 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:11 Download gff for BO01177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 743..1545 16..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:33:34 Download gff for BO01177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RA 1906..2713 10..818 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:33 Download gff for BO01177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1852..2659 10..818 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:33 Download gff for BO01177.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6179052..6179859 10..818 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:33:34 Download gff for BO01177.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6172152..6172959 10..818 99   Plus

BO01177.5prime Sequence

843 bp (763 high quality bases) assembled on 2005-11-30

> BO01177.5prime
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCC

BO01177.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-PA 1545 CG10274-RA 1..827 17..843 4135 100 Plus
CG10270-PA 2325 D19B-RA 1393..1441 419..467 170 93.8 Plus
CG10270-PA 2325 D19B-RA 1045..1107 71..133 165 90.4 Plus
CG10269-PA 2538 D19A-RA 1477..1560 419..502 145 86.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 3034 CG10274-RB 1108..1936 15..843 4145 100 Plus
D19A-RA 3233 CG10269-RA 1217..1766 15..564 950 78.8 Plus
D19B-RA 2685 CG10270-RA 1153..1662 60..569 840 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6180179..6180668 504..15 2450 100 Minus
3L 28110227 3L 6179775..6180117 843..501 1715 100 Minus
3L 28110227 3L 6187297..6187846 564..15 935 78 Minus
3L 28110227 3L 6183199..6183708 569..60 840 77.6 Minus
3L 28110227 3L 6190735..6191126 113..504 535 75.8 Plus
Blast to na_te.dros performed on 2015-02-11 02:07:21 has no hits.

BO01177.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:04 Download gff for BO01177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:12 Download gff for BO01177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:05 Download gff for BO01177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RA 1160..1990 12..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:34:36 Download gff for BO01177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1106..1936 12..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:34:36 Download gff for BO01177.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6179775..6180115 503..843 100 <- Minus
3L 6180181..6180670 12..502 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:05 Download gff for BO01177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6172875..6173215 503..843 100 <- Minus
arm_3L 6173281..6173770 12..502 99   Minus

BO01177.complete Sequence

1576 bp (1576 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629442

> BO01177.complete
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCCGCAGGTG
AACTTTACCAAGAAGGAGGGCAAACATATCTGCCCCGGTTGTGGTCAGGG
ATTCAACAATATCGGAAACATGAAGCGGCACTATAAGATCATCCACGAAA
AGGTCAAAGATTTTGCCTGCCGCTTTTGCCCCAAAAGATTCGCAAAGGCT
CAAACGTTGAGGCATCACGAGTGGATTCATACGGGCGAGAAACCCTTTGA
GTGCAAGACCTGCGGCACCCATTTCCGCCAGGAGACGGCGCTGAAGCGCC
ACCAGCGCACCCACGAGAACCGTCCACCCGTCATTTCGCCCAAGTTTTAT
GCCGCTCGCGAGGAGCTGGAAGAGCAGGAACGCAGCAAGCGAGAGGCGAA
GCGCCAGGCGGATGCGAAGCGGCGCGAAATTGCGGAGGCGGCCAAGGAGC
AGCTATCGTCGCTGCACAAGCTTGAAAGTAGTGACCGCAGCCTGCACTCC
TACGATGAGTACCAGGAGGCAGCGGCGGAGCGAGCAGCGGCATCCGCTGA
ACTCCAGGCGCAGCAGTTTGAAGAGAACGAAGTAAAGCGACTGGCGGAGG
AGGAGCGCCGCAAGGTTCAGGAGGCTGCCTACGAGCAACTGCAACTGTTG
CAGCATCAGCAGGAGGTTGACAAGGCGCAAAGCTCCTACGATGGCTACTA
CGCTCAAAAAGCACATGCCGATGGCACCACTTTGGATGCTTTAAAAATCG
ATCATGTCGCAAGCTTTCTAGACCAT

BO01177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 2592 CG10274-PB 1046..2589 15..1558 7720 100 Plus
D19A-RA 2538 CG10269-PA 1073..1622 15..564 935 78 Plus
D19B-RA 2325 CG10270-PA 1034..1543 60..569 840 77.6 Plus
D19A-RA 2538 CG10269-PA 1858..2169 785..1096 660 80.8 Plus
D19A-RA 2538 CG10269-PA 2285..2535 1308..1558 235 72.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-RB 3034 CG10274-RB 1108..2651 15..1558 7720 100 Plus
D19A-RA 3233 CG10269-RA 1217..1766 15..564 935 78 Plus
D19B-RA 2685 CG10270-RA 1153..1662 60..569 840 77.6 Plus
D19A-RA 3233 CG10269-RA 2002..2313 785..1096 660 80.8 Plus
D19A-RA 3233 CG10269-RA 2429..2679 1308..1558 235 72.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6179060..6180117 1558..501 5290 100 Minus
3L 28110227 3L 6180179..6180668 504..15 2450 100 Minus
3L 28110227 3L 6187297..6187846 564..15 935 78 Minus
3L 28110227 3L 6183199..6183708 569..60 840 77.6 Minus
3L 28110227 3L 6186750..6187061 1096..785 660 80.8 Minus
3L 28110227 3L 6190735..6191126 113..504 535 75.8 Plus
3L 28110227 3L 6182783..6183039 1084..828 370 76.3 Minus
3L 28110227 3L 6191484..6191682 894..1092 260 75.4 Plus
3L 28110227 3L 6186384..6186634 1558..1308 235 72.9 Minus
3L 28110227 3L 6182523..6182650 1437..1310 190 76.6 Minus
Blast to na_te.dros performed 2014-11-27 23:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3267..3310 1418..1461 112 72.7 Plus

BO01177.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:26 Download gff for BO01177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1044..2592 12..1561 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:12 Download gff for BO01177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1044..2597 12..1567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:43 Download gff for BO01177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RA 1164..2705 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:26 Download gff for BO01177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1044..2597 12..1567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:06 Download gff for BO01177.complete
Subject Subject Range Query Range Percent Splice Strand
CG10274-RB 1110..2651 17..1560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:06 Download gff for BO01177.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6179057..6180115 503..1560 99 <- Minus
3L 6180181..6180666 17..502 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:43 Download gff for BO01177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6172157..6173215 503..1560 99 <- Minus
arm_3L 6173281..6173766 17..502 100   Minus

BO01177.pep Sequence

Translation from 16 to 1576

> BO01177.pep
MKKMHGITKAAAPPRDYPCTECEKVFRCPMALKKHMYKHDGKELPFPCNI
CGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEK
KFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHE
MTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVEMG
ETPGEQFDNPPAPPVEGISIEPIMSRNAADELLKVCAESVATIPKDPRRV
QRVDLAQLAGTAVNPIPSVSVPSWSPQVNFTKKEGKHICPGCGQGFNNIG
NMKRHYKIIHEKVKDFACRFCPKRFAKAQTLRHHEWIHTGEKPFECKTCG
THFRQETALKRHQRTHENRPPVISPKFYAAREELEEQERSKREAKRQADA
KRREIAEAAKEQLSSLHKLESSDRSLHSYDEYQEAAAERAAASAELQAQQ
FEENEVKRLAEEERRKVQEAAYEQLQLLQHQQEVDKAQSSYDGYYAQKAH
ADGTTLDALKIDHVASFLDH

BO01177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10274-PB 863 CG10274-PB 350..863 1..514 2779 100 Plus
D19A-PA 845 CG10269-PA 359..838 1..445 1589 62.7 Plus
D19B-PA 774 CG10270-PA 334..774 1..514 1448 55 Plus
CG7386-PA 662 CG7386-PA 276..662 1..431 1290 55.7 Plus
CG10147-PB 448 CG10147-PB 251..430 3..182 439 45.9 Plus
D19B-PA 774 CG10270-PA 255..514 104..369 266 29.1 Plus