Clone Sequence Records
BO01177.3prime Sequence
818 bp (763 high quality bases) assembled on 2005-11-30
> BO01177.3prime
ATGGTCTAGAAAGCTTGCGACATGATCGATTTTTAAAGCATCCAAAGTGG
TGCCATCGGCATGTGCTTTTTGAGCGTAGTAGCCATCGTAGGAGCTTTGC
GCCTTGTCAACCTCCTGCTGATGCTGCAACAGTTGCAGTTGCTCGTAGGC
AGCCTCCTGAACCTTGCGGCGCTCCTCCTCCGCCAGTCGCTTTACTTCGT
TCTCTTCAAACTGCTGCGCCTGGAGTTCAGCGGATGCCGCTGCTCGCTCC
GCCGCTGCCTCCTGGTACTCATCGTAGGAGTGCAGGCTGCGGTCACTACT
TTCAAGCTTGTGCAGCGACGATAGCTGCTCCTTGGCCGCCTCCGCAATTT
CGCGCCGCTTCGCATCCGCCTGGCGCTTCGCCTCTCGCTTGCTGCGTTCC
TGCTCTTCCAGCTCCTCGCGAGCGGCATAAAACTTGGGCGAAATGACGGG
TGGACGGTTCTCGTGGGTGCGCTGGTGGCGCTTCAGCGCCGTCTCCTGGC
GGAAATGGGTGCCGCAGGTCTTGCACTCAAAGGGTTTCTCGCCCGTATGA
ATCCACTCGTGATGCCTCAACGTTTGAGCCTTTGCGAATCTTTTGGGGCA
AAAGCGGCAGGCAAAATCTTTGACCTTTTCGTGGATGATCTTATAGTGCC
GCTTCATGTTTCCGATATTGTTGAATCCCTGACCACAACCGGGGCAGATA
TGTTTGCCCTCCTTCTTGGTAAAGTTCACCTGCGGCGACCACGACGGCAC
TGAAACAGAGGGTATGGGGTTCACAGCAGTGCCAGCCAACTGCGCCAGAT
CCACTCGTTGTACACGGC
BO01177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-PA | 1545 | CG10274-RA | 743..1542 | 818..19 | 4000 | 100 | Minus |
CG10270-PA | 2325 | D19B-RA | 1708..1760 | 744..692 | 165 | 92.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 3034 | CG10274-RB | 1852..2651 | 818..19 | 4000 | 100 | Minus |
D19A-RA | 3233 | CG10269-RA | 2002..2313 | 792..481 | 660 | 80.8 | Minus |
D19B-RA | 2685 | CG10270-RA | 1822..2078 | 749..493 | 370 | 77.7 | Minus |
D19A-RA | 3233 | CG10269-RA | 2429..2679 | 269..19 | 235 | 73.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6179060..6179859 | 19..818 | 4000 | 100 | Plus |
3L | 28110227 | 3L | 6186750..6187061 | 481..792 | 660 | 80.8 | Plus |
3L | 28110227 | 3L | 6182783..6183039 | 493..749 | 370 | 76.3 | Plus |
3L | 28110227 | 3L | 6191484..6191682 | 683..485 | 260 | 75.4 | Minus |
3L | 28110227 | 3L | 6186384..6186634 | 19..269 | 235 | 72.9 | Plus |
3L | 28110227 | 3L | 6182523..6182650 | 140..267 | 190 | 76.6 | Plus |
Blast to na_te.dros performed 2015-02-10 15:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3310 | 159..116 | 112 | 72.7 | Minus |
BO01177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:03 Download gff for
BO01177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 743..1545 | 16..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:11 Download gff for
BO01177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 743..1545 | 16..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:33:34 Download gff for
BO01177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RA | 1906..2713 | 10..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:33 Download gff for
BO01177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1852..2659 | 10..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:33 Download gff for
BO01177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6179052..6179859 | 10..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:33:34 Download gff for
BO01177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6172152..6172959 | 10..818 | 99 | | Plus |
BO01177.5prime Sequence
843 bp (763 high quality bases) assembled on 2005-11-30
> BO01177.5prime
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCC
BO01177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-PA | 1545 | CG10274-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
CG10270-PA | 2325 | D19B-RA | 1393..1441 | 419..467 | 170 | 93.8 | Plus |
CG10270-PA | 2325 | D19B-RA | 1045..1107 | 71..133 | 165 | 90.4 | Plus |
CG10269-PA | 2538 | D19A-RA | 1477..1560 | 419..502 | 145 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 3034 | CG10274-RB | 1108..1936 | 15..843 | 4145 | 100 | Plus |
D19A-RA | 3233 | CG10269-RA | 1217..1766 | 15..564 | 950 | 78.8 | Plus |
D19B-RA | 2685 | CG10270-RA | 1153..1662 | 60..569 | 840 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6180179..6180668 | 504..15 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 6179775..6180117 | 843..501 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 6187297..6187846 | 564..15 | 935 | 78 | Minus |
3L | 28110227 | 3L | 6183199..6183708 | 569..60 | 840 | 77.6 | Minus |
3L | 28110227 | 3L | 6190735..6191126 | 113..504 | 535 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:07:21 has no hits.
BO01177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:04 Download gff for
BO01177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:12 Download gff for
BO01177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:05 Download gff for
BO01177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RA | 1160..1990 | 12..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:34:36 Download gff for
BO01177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1106..1936 | 12..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:34:36 Download gff for
BO01177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6179775..6180115 | 503..843 | 100 | <- | Minus |
3L | 6180181..6180670 | 12..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:05 Download gff for
BO01177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6172875..6173215 | 503..843 | 100 | <- | Minus |
arm_3L | 6173281..6173770 | 12..502 | 99 | | Minus |
BO01177.complete Sequence
1576 bp (1576 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629442
> BO01177.complete
GAAGTTATCAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGG
CGCCCCCACGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGT
CCCATGGCGCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCC
TTTCCCCTGTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAA
AGGATCATCTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTAC
TGTGGCGTGGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGAC
GCATACCCAGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGC
ACAATAAGCAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATC
AAAAACTATGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGC
CTGCAAGATCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCA
AGGTTTGTGGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTG
AAGACTCATGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCG
GCAGGTGGAAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCG
CGCCACCAGTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCT
GCCGACGAATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAA
AGATCCACGCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTG
CTGTGAACCCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCCGCAGGTG
AACTTTACCAAGAAGGAGGGCAAACATATCTGCCCCGGTTGTGGTCAGGG
ATTCAACAATATCGGAAACATGAAGCGGCACTATAAGATCATCCACGAAA
AGGTCAAAGATTTTGCCTGCCGCTTTTGCCCCAAAAGATTCGCAAAGGCT
CAAACGTTGAGGCATCACGAGTGGATTCATACGGGCGAGAAACCCTTTGA
GTGCAAGACCTGCGGCACCCATTTCCGCCAGGAGACGGCGCTGAAGCGCC
ACCAGCGCACCCACGAGAACCGTCCACCCGTCATTTCGCCCAAGTTTTAT
GCCGCTCGCGAGGAGCTGGAAGAGCAGGAACGCAGCAAGCGAGAGGCGAA
GCGCCAGGCGGATGCGAAGCGGCGCGAAATTGCGGAGGCGGCCAAGGAGC
AGCTATCGTCGCTGCACAAGCTTGAAAGTAGTGACCGCAGCCTGCACTCC
TACGATGAGTACCAGGAGGCAGCGGCGGAGCGAGCAGCGGCATCCGCTGA
ACTCCAGGCGCAGCAGTTTGAAGAGAACGAAGTAAAGCGACTGGCGGAGG
AGGAGCGCCGCAAGGTTCAGGAGGCTGCCTACGAGCAACTGCAACTGTTG
CAGCATCAGCAGGAGGTTGACAAGGCGCAAAGCTCCTACGATGGCTACTA
CGCTCAAAAAGCACATGCCGATGGCACCACTTTGGATGCTTTAAAAATCG
ATCATGTCGCAAGCTTTCTAGACCAT
BO01177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 2592 | CG10274-PB | 1046..2589 | 15..1558 | 7720 | 100 | Plus |
D19A-RA | 2538 | CG10269-PA | 1073..1622 | 15..564 | 935 | 78 | Plus |
D19B-RA | 2325 | CG10270-PA | 1034..1543 | 60..569 | 840 | 77.6 | Plus |
D19A-RA | 2538 | CG10269-PA | 1858..2169 | 785..1096 | 660 | 80.8 | Plus |
D19A-RA | 2538 | CG10269-PA | 2285..2535 | 1308..1558 | 235 | 72.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-RB | 3034 | CG10274-RB | 1108..2651 | 15..1558 | 7720 | 100 | Plus |
D19A-RA | 3233 | CG10269-RA | 1217..1766 | 15..564 | 935 | 78 | Plus |
D19B-RA | 2685 | CG10270-RA | 1153..1662 | 60..569 | 840 | 77.6 | Plus |
D19A-RA | 3233 | CG10269-RA | 2002..2313 | 785..1096 | 660 | 80.8 | Plus |
D19A-RA | 3233 | CG10269-RA | 2429..2679 | 1308..1558 | 235 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6179060..6180117 | 1558..501 | 5290 | 100 | Minus |
3L | 28110227 | 3L | 6180179..6180668 | 504..15 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 6187297..6187846 | 564..15 | 935 | 78 | Minus |
3L | 28110227 | 3L | 6183199..6183708 | 569..60 | 840 | 77.6 | Minus |
3L | 28110227 | 3L | 6186750..6187061 | 1096..785 | 660 | 80.8 | Minus |
3L | 28110227 | 3L | 6190735..6191126 | 113..504 | 535 | 75.8 | Plus |
3L | 28110227 | 3L | 6182783..6183039 | 1084..828 | 370 | 76.3 | Minus |
3L | 28110227 | 3L | 6191484..6191682 | 894..1092 | 260 | 75.4 | Plus |
3L | 28110227 | 3L | 6186384..6186634 | 1558..1308 | 235 | 72.9 | Minus |
3L | 28110227 | 3L | 6182523..6182650 | 1437..1310 | 190 | 76.6 | Minus |
Blast to na_te.dros performed 2014-11-27 23:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3267..3310 | 1418..1461 | 112 | 72.7 | Plus |
BO01177.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:26 Download gff for
BO01177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1044..2592 | 12..1561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:12 Download gff for
BO01177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1044..2597 | 12..1567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:43 Download gff for
BO01177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RA | 1164..2705 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:26 Download gff for
BO01177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1044..2597 | 12..1567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:06 Download gff for
BO01177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10274-RB | 1110..2651 | 17..1560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:06 Download gff for
BO01177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6179057..6180115 | 503..1560 | 99 | <- | Minus |
3L | 6180181..6180666 | 17..502 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:43 Download gff for
BO01177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6172157..6173215 | 503..1560 | 99 | <- | Minus |
arm_3L | 6173281..6173766 | 17..502 | 100 | | Minus |
BO01177.pep Sequence
Translation from 16 to 1576
> BO01177.pep
MKKMHGITKAAAPPRDYPCTECEKVFRCPMALKKHMYKHDGKELPFPCNI
CGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEK
KFKCHICEHASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHE
MTHTGEKRCECKVCGKKFLYPKSLTKHLKTHEKRVLRAIETYRQRQVEMG
ETPGEQFDNPPAPPVEGISIEPIMSRNAADELLKVCAESVATIPKDPRRV
QRVDLAQLAGTAVNPIPSVSVPSWSPQVNFTKKEGKHICPGCGQGFNNIG
NMKRHYKIIHEKVKDFACRFCPKRFAKAQTLRHHEWIHTGEKPFECKTCG
THFRQETALKRHQRTHENRPPVISPKFYAAREELEEQERSKREAKRQADA
KRREIAEAAKEQLSSLHKLESSDRSLHSYDEYQEAAAERAAASAELQAQQ
FEENEVKRLAEEERRKVQEAAYEQLQLLQHQQEVDKAQSSYDGYYAQKAH
ADGTTLDALKIDHVASFLDH
BO01177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10274-PB | 863 | CG10274-PB | 350..863 | 1..514 | 2779 | 100 | Plus |
D19A-PA | 845 | CG10269-PA | 359..838 | 1..445 | 1589 | 62.7 | Plus |
D19B-PA | 774 | CG10270-PA | 334..774 | 1..514 | 1448 | 55 | Plus |
CG7386-PA | 662 | CG7386-PA | 276..662 | 1..431 | 1290 | 55.7 | Plus |
CG10147-PB | 448 | CG10147-PB | 251..430 | 3..182 | 439 | 45.9 | Plus |
D19B-PA | 774 | CG10270-PA | 255..514 | 104..369 | 266 | 29.1 | Plus |