Clone Sequence Records
BO01180.3prime Sequence
843 bp (811 high quality bases) assembled on 2005-11-30
> BO01180.3prime
ATGGTCTAGAAAGCTTGCCTGCGGCTGCGGCTGTTGCTGCTGCGGTATGA
AGACCTGATCGCCCACAATGTGTATGACGTTCTGCATGCCCTGCTGTTGT
GCCGCTTGCTGTTGCTGCTGCTGCCCAGTGCCGCCCCCGCCGCCGCCCTC
ATGTTTGATGTATGCCTGTCCACCACCCGCTAATGTTGCTGTCAAGTGCT
GCTGGTGTTGCTGCTGCAGTTGCTGCTGTTGCTGCTGCTGGGGCAGCACA
CCTTGGGCCAGGATGGCCGGCGCCCCCGCGGCCTGCGGTGCATTCGATAT
CACTCTCGTTGGCGTCGTACCAGATGATTGTCCTCCTGCTGATCCTGCTC
CGCCTGCTCCATCACTGCCCACTGTGTTGTCGCCCTCTGCCGTGGTGTTC
ATCTCCATGCTGGAGTCTAGGGTTGTATCGTTACCGGACTTACTTTTCTT
CTCCTTCTTCACGCCGGGTTTGGCAAAATGCCGCAGCTCGAGATGGCGCC
GCAGGTTCCGGGATTGACGAATGACAGCATAGCAAATGGGGCAAGTAGCA
GGTTGTTCAGATTGTGATCGTGAACGTGGTTTCTCTGTTCCGGGCGGATG
TTTAGCGCGTTTTGCCTTTGGCGTGGATAGGACGCCGCTTGTATTGCCGC
CAGATGAGCCAGTGGCTCCTTGTGCTGGTGTTATCTCGCCAGTTGCCGCA
TTAGCCGACGTTACCGGTATCATGTTGTTGGGGTCCATGGTCACAATAGT
CTCTACCTTTTGTCCTTCGCTCTTGATGATCGGTGTGGATGATAGCAGTT
GGCCCTCGGCTCCATTTTCGCCAAGCACCTGCTGCACGGATCC
BO01180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33261-PD | 1560 | Trl-RD | 733..1557 | 843..19 | 4125 | 100 | Minus |
| CG33261-PC | 1560 | Trl-RC | 733..1557 | 843..19 | 4125 | 100 | Minus |
| CG33261-PB | 1560 | Trl-RB | 733..1557 | 843..19 | 4125 | 100 | Minus |
| CG33261-PE | 1560 | Trl-RE | 733..1557 | 843..19 | 4125 | 100 | Minus |
| CG33261-PG | 1431 | Trl-RG | 604..1428 | 843..19 | 4125 | 100 | Minus |
| CG33261-PH | 1560 | Trl-RH | 733..1557 | 843..19 | 4125 | 100 | Minus |
| CG33261-PA | 1749 | Trl-RA | 733..1132 | 843..444 | 2000 | 100 | Minus |
| CG33261-PF | 1749 | Trl-RF | 733..1132 | 843..444 | 2000 | 100 | Minus |
| CG33261-PI | 1704 | Trl-RI | 733..1132 | 843..444 | 2000 | 100 | Minus |
| CG11491-PG | 1992 | br-RG | 1397..1433 | 248..212 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RH | 1911 | CG33261-RH | 1023..1847 | 843..19 | 4125 | 100 | Minus |
| Trl-RE | 2156 | CG33261-RE | 1268..2092 | 843..19 | 4125 | 100 | Minus |
| Trl-RB | 4441 | CG33261-RB | 1089..1913 | 843..19 | 4125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14752909..14753471 | 19..581 | 2815 | 100 | Plus |
| 3L | 28110227 | 3L | 14753631..14753892 | 582..843 | 1310 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 15:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6823 | 123..19 | 128 | 68.6 | Minus |
BO01180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:09 Download gff for
BO01180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PD | 733..1560 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:18 Download gff for
BO01180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PB | 733..1560 | 18..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:21 Download gff for
BO01180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RE | 1268..2096 | 13..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:03 Download gff for
BO01180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 1089..1917 | 13..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:03 Download gff for
BO01180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14752905..14753471 | 13..581 | 99 | <- | Plus |
| 3L | 14753631..14753892 | 582..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:21 Download gff for
BO01180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746005..14746571 | 13..581 | 99 | <- | Plus |
| arm_3L | 14746731..14746992 | 582..843 | 100 | | Plus |
BO01180.5prime Sequence
887 bp (760 high quality bases) assembled on 2005-11-30
> BO01180.5prime
GAAGTTATCAGTCGACATGTCGCTGCCAATGAATTCGCTGTATTCGCTCA
CCTGGGGCGATTACGGCACCAGCCTCGTATCGGCAATCCAATTGTTGCGC
TGCCATGGCGACCTCGTCGATTGCACGTTGGCCGCCGGCGGGCGGAGTTT
TCCCGCCCACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACT
TGCTAAAGAATACACCATGCAAGCATCCAGTGGTTATGTTGGCTGGCGTC
AATGCGAACGATCTGGAGGCGCTGCTGGAGTTTGTGTACCGCGGAGAGGT
GAGCGTGGATCACGCCCAGCTGCCGTCGCTACTGCAGGCTGCCCAGTGCC
TGAACATCCAGGGACTGGCACCGCAGACGGTTACCAAGGACGACTACACC
ACGCACTCGATACAACTGCAGCACATGATTCCACAACATCACGACCAAGA
CCAACTGATTGCCACGATCGCCACGGCTCCACAGCAAACGGTTCATGCCC
AGGTGGTGGAGGACATCCATCATCAGGGCCAGATTCTCCAGGCAACGACC
CAGACCAACGCAGCAGGACAACAGCAGACCATTGTGACAACCGACGCGGC
TAAACATGACCAGGCAGTGATTCAGGCTTTTCTTCCGGCACGCAAACGCA
AACCACGCGTAAAGAAAATGTCACCTACGGCACCGAAAATAAGCAAAGTT
GAAGGAATGGATACGATTATGGGCACACCGACCTCTTCACACGGCTCTGG
ATCCGTGCAGCAGGTGCTTGGCGAAAATGGAGCCGAGGGCCAACTGCTAT
CATCCACACCGATCATCAAGAGCGAAAGACAAAAGGTAGAGACTATTGTG
ACCTTGGACCCCAACAACATGATACCGGTAAACGTCG
BO01180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33261-PA | 1749 | Trl-RA | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PD | 1560 | Trl-RD | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PC | 1560 | Trl-RC | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PB | 1560 | Trl-RB | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PE | 1560 | Trl-RE | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PF | 1749 | Trl-RF | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PH | 1560 | Trl-RH | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PI | 1704 | Trl-RI | 1..865 | 17..881 | 4275 | 99.7 | Plus |
| CG33261-PG | 1431 | Trl-RG | 191..736 | 336..881 | 2680 | 99.6 | Plus |
| CG33261-PG | 1431 | Trl-RG | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RK | 3145 | CG33261-RK | 357..1226 | 17..887 | 4300 | 99.7 | Plus |
| Trl-RJ | 3814 | CG33261-RJ | 242..1111 | 17..887 | 4300 | 99.7 | Plus |
| Trl-RI | 3806 | CG33261-RI | 357..1226 | 17..887 | 4300 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14754085..14754552 | 674..207 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 14753760..14753966 | 881..675 | 1005 | 99 | Minus |
| 3L | 28110227 | 3L | 14756904..14757095 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:21:39 has no hits.
BO01180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:10 Download gff for
BO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PA | 1..870 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:20 Download gff for
BO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PD | 1..870 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:21:51 Download gff for
BO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RK | 357..1226 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:19:04 Download gff for
BO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RI | 357..1226 | 17..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:19:04 Download gff for
BO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14753755..14753966 | 675..887 | 98 | <- | Minus |
| 3L | 14754085..14754550 | 209..674 | 100 | <- | Minus |
| 3L | 14756904..14757095 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:21:51 Download gff for
BO01180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746855..14747066 | 675..887 | 98 | <- | Minus |
| arm_3L | 14747185..14747650 | 209..674 | 100 | <- | Minus |
| arm_3L | 14750004..14750195 | 17..208 | 100 | | Minus |
BO01180.complete Sequence
1591 bp (1591 high quality bases) assembled on 2005-06-24
GenBank Submission: FJ629443
> BO01180.complete
GAAGTTATCAGTCGACATGTCGCTGCCAATGAATTCGCTGTATTCGCTCA
CCTGGGGCGATTACGGCACCAGCCTCGTATCGGCAATCCAATTGTTGCGC
TGCCATGGCGACCTCGTCGATTGCACGTTGGCCGCCGGCGGGCGGAGTTT
TCCCGCCCACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACT
TGCTAAAGAATACACCATGCAAGCATCCAGTGGTTATGTTGGCTGGCGTC
AATGCGAACGATCTGGAGGCGCTGCTGGAGTTTGTGTACCGCGGAGAGGT
GAGCGTGGATCACGCCCAGCTGCCGTCGCTACTGCAGGCTGCCCAGTGCC
TGAACATCCAGGGACTGGCACCGCAGACGGTTACCAAGGACGACTACACC
ACGCACTCGATACAACTGCAGCACATGATTCCACAACATCACGACCAAGA
CCAACTGATTGCCACGATCGCCACGGCTCCACAGCAAACGGTTCATGCCC
AGGTGGTGGAGGACATCCATCATCAGGGCCAGATTCTCCAGGCAACGACC
CAGACCAACGCAGCAGGACAACAGCAGACCATTGTGACAACCGACGCGGC
TAAACATGACCAGGCAGTGATTCAGGCTTTTCTTCCGGCACGCAAACGCA
AACCACGCGTAAAGAAAATGTCACCTACGGCACCGAAAATAAGCAAAGTT
GAAGGAATGGATACGATTATGGGCACACCGACCTCTTCACACGGCTCTGG
ATCCGTGCAGCAGGTGCTTGGCGAAAATGGAGCCGAGGGCCAACTGCTAT
CATCCACACCGATCATCAAGAGCGAAGGACAAAAGGTAGAGACTATTGTG
ACCATGGACCCCAACAACATGATACCGGTAACGTCGGCTAATGCGGCAAC
TGGCGAGATAACACCAGCACAAGGAGCCACTGGCTCATCTGGCGGCAATA
CAAGCGGCGTCCTATCCACGCCAAAGGCAAAACGCGCTAAACATCCGCCC
GGAACAGAGAAACCACGTTCACGATCACAATCTGAACAACCTGCTACTTG
CCCCATTTGCTATGCTGTCATTCGTCAATCCCGGAACCTGCGGCGCCATC
TCGAGCTGCGGCATTTTGCCAAACCCGGCGTGAAGAAGGAGAAGAAAAGT
AAGTCCGGTAACGATACAACCCTAGACTCCAGCATGGAGATGAACACCAC
GGCAGAGGGCGACAACACAGTGGGCAGTGATGGAGCAGGCGGAGCAGGAT
CAGCAGGAGGACAATCATCTGGTACGACGCCAACGAGAGTGATATCGAAT
GCACCGCAGGCCGCGGGGGCGCCGGCCATCCTGGCCCAAGGTGTGCTGCC
CCAGCAGCAGCAACAGCAGCAACTGCAGCAGCAACACCAGCAGCACTTGA
CAGCAACATTAGCGGGTGGTGGACAGGCATACATCAAACATGAGGGCGGC
GGCGGGGGCGGCACTGGGCAGCAGCAGCAACAGCAAGCGGCACAACAGCA
GGGCATGCAGAACGTCATACACATTGTGGGCGATCAGGTCTTCATACCGC
AGCAGCAACAGCCGCAGCCGCAGGCAAGCTTTCTAGACCAT
BO01180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RH | 1560 | CG33261-PH | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| Trl-RE | 1560 | CG33261-PE | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| Trl-RB | 1560 | CG33261-PB | 1..1557 | 17..1573 | 7785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RH | 1911 | CG33261-RH | 291..1847 | 17..1573 | 7785 | 100 | Plus |
| Trl-RE | 2156 | CG33261-RE | 536..2092 | 17..1573 | 7785 | 100 | Plus |
| Trl-RB | 4441 | CG33261-RB | 357..1913 | 17..1573 | 7785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14752909..14753471 | 1573..1011 | 2815 | 100 | Minus |
| 3L | 28110227 | 3L | 14754085..14754552 | 674..207 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 14753631..14753966 | 1010..675 | 1680 | 100 | Minus |
| 3L | 28110227 | 3L | 14756904..14757095 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6823 | 1469..1573 | 128 | 68.6 | Plus |
BO01180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:15 Download gff for
BO01180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 1..1560 | 17..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:20 Download gff for
BO01180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 354..1914 | 17..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:04 Download gff for
BO01180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RE | 536..2092 | 17..1575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:15 Download gff for
BO01180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 354..1914 | 17..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:38 Download gff for
BO01180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 357..1913 | 17..1575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:38 Download gff for
BO01180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14752905..14753471 | 1011..1575 | 99 | <- | Minus |
| 3L | 14753631..14753966 | 675..1010 | 100 | <- | Minus |
| 3L | 14754085..14754550 | 209..674 | 100 | <- | Minus |
| 3L | 14756904..14757095 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:04 Download gff for
BO01180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746731..14747066 | 675..1010 | 100 | <- | Minus |
| arm_3L | 14746005..14746571 | 1011..1575 | 99 | <- | Minus |
| arm_3L | 14747185..14747650 | 209..674 | 100 | <- | Minus |
| arm_3L | 14750004..14750195 | 17..208 | 100 | | Minus |
BO01180.pep Sequence
Translation from 16 to 1591
> BO01180.pep
MSLPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKI
VLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHA
QLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHDQDQLIAT
IATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGQQQTIVTTDAAKHDQA
VIQAFLPARKRKPRVKKMSPTAPKISKVEGMDTIMGTPTSSHGSGSVQQV
LGENGAEGQLLSSTPIIKSEGQKVETIVTMDPNNMIPVTSANAATGEITP
AQGATGSSGGNTSGVLSTPKAKRAKHPPGTEKPRSRSQSEQPATCPICYA
VIRQSRNLRRHLELRHFAKPGVKKEKKSKSGNDTTLDSSMEMNTTAEGDN
TVGSDGAGGAGSAGGQSSGTTPTRVISNAPQAAGAPAILAQGVLPQQQQQ
QQLQQQHQQHLTATLAGGGQAYIKHEGGGGGGTGQQQQQQAAQQQGMQNV
IHIVGDQVFIPQQQQPQPQASFLDH
BO01180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-PH | 519 | CG33261-PH | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PE | 519 | CG33261-PE | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PB | 519 | CG33261-PB | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PC | 519 | CG33261-PC | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PD | 519 | CG33261-PD | 1..519 | 1..519 | 2673 | 100 | Plus |
