Clone BO01184 Report

Search the DGRC for BO01184

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptnoc-RA
Protein status:BO01184.pep:
Sequenced Size:1645

Clone Sequence Records

BO01184.3prime Sequence

858 bp (792 high quality bases) assembled on 2005-11-30

> BO01184.3prime
ATGGTCTAGAAAGCTTGCCTGATGAGCCGCTCCCATCCTCTGGCCGTACA
TGGCGTATGGCGAGTAGTAGGGTCCCAGAGCAGCTGCCGCAGCCGCCGCG
GCAGGATTGAATGCTCCAGCGGCGCCGAAGGGCGAAGGTCCTCCAGCCAA
GGCGCCTGGTGGTGGCTTGGCGTATGGATGATACCTCGCCGCTGCCGCAG
CCGCTGACATGGGACTCAGTGGTGGTGTTGGATAGCCAGCTCGGAGAGCC
GATGGCGGAAATAGGGTTCCCAGCAGGGATTGAGCCTGCGATTGGGCCAA
GGCCGCCGCAGCAGCCGCCGGATCGGAGAGATTGCCCGTATGGGTGCGCA
GGTGGGAGAAGAGCTCGTCGGAGGTCTGGAATCGCTTGCCGCAGTAGGCA
TCGCCCACCACCCAACTGCACACGTAGGGTGCCGAACGGGCTGCCGCCGC
GTTTGCCGCAGCAGCGGCCGCTGCCTGCGAGTATGGATGAGCTGGTGGCA
GTCCGGCGGCACTGGCCATGGCCAGGCCGTATTTCTGATGCTCGCACTGG
GTGCATCCGGCGGGGCAGGGGGCACCCATGAGCATTTGTTGCGTGTGCGC
CGAGTAGGGACATCCCTGGCAATACGGATCCTTGCAGACTGGCACTATAG
CCTCGCCGCCAGCTGGTGTCTTGATGCGCTGATAACTTATGTACGGATTG
GGCTGTCCGGCTGGTCCACCGCCGGGAGCTCCGCCTGGATATCCTCCATT
GGCGGCAACTGCCAACATGGCGGCGTGATGGTGTGAGAATCCTCCGGCAA
ACGGTGGCCGGAAAGCGGGATTGGCGTGCTGCTCCATCCCGGGCGGGCAG
CACAGGGC

BO01184.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4491-PA 1614 noc-RA 772..1611 858..19 4175 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 1159..1998 858..19 4185 99.9 Minus
noc-RA 2859 CG4491-RA 1159..1998 858..19 4185 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14492319..14493158 858..19 4185 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 01:04:15 has no hits.

BO01184.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:16 Download gff for BO01184.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-PA 772..1614 15..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:30 Download gff for BO01184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4491-PA 772..1614 15..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:45 Download gff for BO01184.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1159..2008 8..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:55 Download gff for BO01184.3prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1159..2008 8..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:55 Download gff for BO01184.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14492319..14493168 8..858 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:45 Download gff for BO01184.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14492319..14493168 8..858 99   Minus

BO01184.5prime Sequence

839 bp (774 high quality bases) assembled on 2005-11-30

> BO01184.5prime
GAAGTTATCAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTA
CCATCGGTAACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCA
ACGACGATGGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTG
CTCCCAAATTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGG
ACAAGAACAAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCG
AGTTCCTCGGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCA
GGCCAAATCGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCG
CAAGTCTGAGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCC
TACGAGACCAATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAG
CTCTTCGCTGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCAT
CCGCCCAGGAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACA
GATGGCGGCAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAA
GACTGTCTCCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGC
GCTCCGGCATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCC
AAGGAAATGAGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTA
CAAGGCCGCCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCC
CGCCCGGAATGGAGCAGCACGCCCATCCCGCTTTCCGGC

BO01184.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4491-PA 1614 noc-RA 1..823 17..839 4090 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 388..1210 17..839 4100 99.9 Plus
noc-RA 2859 CG4491-RA 388..1210 17..839 4100 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14491637..14492370 106..839 3655 99.9 Plus
2L 23513712 2L 14491246..14491335 17..106 450 100 Plus
Blast to na_te.dros performed 2015-02-12 05:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 1440..1507 142..209 114 68.6 Plus

BO01184.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:17 Download gff for BO01184.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-PA 1..823 17..839 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:31 Download gff for BO01184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4491-PA 1..823 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:17:30 Download gff for BO01184.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 385..1210 14..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:04 Download gff for BO01184.5prime
Subject Subject Range Query Range Percent Splice Strand
noc-RA 385..1210 14..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:04 Download gff for BO01184.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14491243..14491335 14..106 98 -> Plus
2L 14491638..14492370 107..839 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:17:30 Download gff for BO01184.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14491243..14491335 14..106 98 -> Plus
arm_2L 14491638..14492370 107..839 99   Plus

BO01184.complete Sequence

1645 bp (1645 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629444

> BO01184.complete
GAAGTTATCAGTCGACATGGTTGTCTTGGAAGGAGGCGGCGGCGTTGTTA
CCATCGGTAACAACCAGTACCTTCAACCGGATTATCTGGCCCCATTGCCA
ACGACGATGGACGCCAAAAAGAGTCCCTTGGCTCTGCTCGCACAGACTTG
CTCCCAAATTGGAGCGGATTCGTCGGCAGTGAAACCCCTGCTGGCAATGG
ACAAGAACAAGACAAAGCCCGGAGCATGCTCCTCGTCGTCGAACTCGTCG
AGTTCCTCGGGCAGTGCTGAGATCTCGGCAGCCAAGTCACCCTCCGGCCA
GGCCAAATCGCCCAAGTCGAGCACTCCAATCAGCTCGACGGCAACCAGCG
CAAGTCTGAGTAATACCAGCACCGGTGAAATCAAACTGGCCTTCAAGCCC
TACGAGACCAATGTGCTGAGCCACCAGAACCAGAACTCCTTCAAGAGCAG
CTCTTCGCTGGATGCGGAACCCACGCGTCCCAGCTCTAAGAACTCCTCAT
CCGCCCAGGAGCGTGTGCCATCGCGCAGCAAATCAAATGCCACGCCCACA
GATGGCGGCAAGGCGGAGATTTCCGCGCACGATTCCTCATCCAGCCGAAA
GACTGTCTCCCCGTCGGGATCGTCGCAACGCGGCGCCAGTCCCATTGTGC
GCTCCGGCATGGAGGTGCTGAACAATGCCAACGGAACCGCCCAGCATCCC
AAGGAAATGAGCAGCATGGCTGCGGCGGCAGCAGCAGCAGCAGCGGCTTA
CAAGGCCGCCGGACCCTATGGGCTGAATCCCCTGTCCGCCCTGTGCTGCC
CGCCCGGAATGGAGCAGCACGCCAATCCCGCTTTCCGGCCACCGTTTGCC
GGAGGATTCTCACACCATCACGCCGCCATGTTGGCAGTTGCCGCCAATGG
AGGATATCCAGGCGGAGCTCCCGGCGGTGGACCAGCCGGACAGCCCAATC
CGTACATAAGTTATCAGCGCATCAAGACACCAGCTGGCGGCGAGGCTATA
GTGCCAGTCTGCAAGGATCCGTATTGCCAGGGATGTCCCTACTCGGCGCA
CACGCAACAAATGCTCATGGGTGCCCCCTGCCCCGCCGGATGCACCCAGT
GCGAGCATCAGAAATACGGCCTGGCCATGGCCAGTGCCGCCGGACTGCCA
CCAGCTCATCCATACTCGCAGGCAGCGGCCGCTGCTGCGGCAAACGCGGC
GGCAGCCCGTTCGGCACCCTACGTGTGCAGTTGGGTGGTGGGCGATGCCT
ACTGCGGCAAGCGATTCCAGACCTCCGACGAGCTCTTCTCCCACCTGCGC
ACCCATACGGGCAATCTCTCCGATCCGGCGGCTGCTGCGGCGGCCTTGGC
CCAATCGCAGGCTCAATCCCTGCTGGGAACCCTATTTCCGCCATCGGCTC
TCCGAGCTGGCTATCCAACACCACCACTGAGTCCCATGTCAGCGGCTGCG
GCAGCGGCGAGGTATCATCCATACGCCAAGCCACCACCAGGCGCCTTGGC
TGGAGGACCTTCGCCCTTCGGCGCCGCTGGAGCATTCAATCCTGCCGCGG
CGGCTGCGGCAGCTGCTCTGGGACCCTACTACTCGCCATACGCCATGTAC
GGCCAGAGGATGGGAGCGGCTCATCAGGCAAGCTTTCTAGACCAT

BO01184.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 1614 CG4491-PB 1..1611 17..1627 8055 100 Plus
noc-RA 1614 CG4491-PA 1..1611 17..1627 8055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
noc-RB 2673 CG4491-RB 388..1998 17..1627 8055 100 Plus
noc-RA 2859 CG4491-RA 388..1998 17..1627 8055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14491637..14493158 106..1627 7610 100 Plus
2L 23513712 2L 14491246..14491335 17..106 450 100 Plus
Blast to na_te.dros performed 2014-11-26 22:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 1440..1507 142..209 114 68.6 Plus

BO01184.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:27 Download gff for BO01184.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 1..1614 17..1631 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:14 Download gff for BO01184.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 382..2005 14..1638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:54 Download gff for BO01184.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 388..1998 17..1629 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:27 Download gff for BO01184.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 382..2005 14..1638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:46 Download gff for BO01184.complete
Subject Subject Range Query Range Percent Splice Strand
noc-RA 388..1998 17..1629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:46 Download gff for BO01184.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14491246..14491335 17..106 100 -> Plus
2L 14491638..14493158 107..1629 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:54 Download gff for BO01184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14491246..14491335 17..106 100 -> Plus
arm_2L 14491638..14493158 107..1629 99   Plus

BO01184.pep Sequence

Translation from 16 to 1645

> BO01184.pep
MVVLEGGGGVVTIGNNQYLQPDYLAPLPTTMDAKKSPLALLAQTCSQIGA
DSSAVKPLLAMDKNKTKPGACSSSSNSSSSSGSAEISAAKSPSGQAKSPK
SSTPISSTATSASLSNTSTGEIKLAFKPYETNVLSHQNQNSFKSSSSLDA
EPTRPSSKNSSSAQERVPSRSKSNATPTDGGKAEISAHDSSSSRKTVSPS
GSSQRGASPIVRSGMEVLNNANGTAQHPKEMSSMAAAAAAAAAAYKAAGP
YGLNPLSALCCPPGMEQHANPAFRPPFAGGFSHHHAAMLAVAANGGYPGG
APGGGPAGQPNPYISYQRIKTPAGGEAIVPVCKDPYCQGCPYSAHTQQML
MGAPCPAGCTQCEHQKYGLAMASAAGLPPAHPYSQAAAAAAANAAAARSA
PYVCSWVVGDAYCGKRFQTSDELFSHLRTHTGNLSDPAAAAAALAQSQAQ
SLLGTLFPPSALRAGYPTPPLSPMSAAAAAARYHPYAKPPPGALAGGPSP
FGAAGAFNPAAAAAAAALGPYYSPYAMYGQRMGAAHQASFLDH

BO01184.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
noc-PB 537 CG4491-PB 1..537 1..537 2792 100 Plus
noc-PA 537 CG4491-PA 1..537 1..537 2792 100 Plus
elB-PC 552 CG4220-PC 6..551 15..536 662 35.5 Plus
elB-PD 553 CG4220-PD 6..552 15..536 650 35.4 Plus
Muc91C-PB 949 CG7709-PB 475..925 52..523 158 23.5 Plus