Clone Sequence Records
BO01188.3prime Sequence
765 bp (755 high quality bases) assembled on 2005-11-30
> BO01188.3prime
ATGGTCTAGAAAGCTTGCCTGAAGACGTGGCCAGTAATTGCTTCCCGTTA
GGTCAGATACATTTTGCGTTGAAATCTGGACAGGCACCGAAACGCCCGCA
GAAATGACACCTGTGTTTGATGATGGCATTGGAGAACTATTGGTATAAAC
GCCATGCTGAGGGGGCTGTTGGTGCGCAGCTGAGGGGTTGCAAGCTGTGT
TTCGATGGTGGGCTGACACATAGGGAGATCCTAGTGATAACGGATCGTGA
AACATGTAAGGATAGGCATCGCGTTGTTGTAAGCATGACGGGGTCATTGA
TCCTAATGAGGAGTTGTAATTTTCAGCCATCGTTGCAATCGGTTGTGGAA
TAGATGAGTACATGGTGTTGAATCCAGAATTTAAGGGTAGCCGCGGTGCC
GCTGGCTGAAGGGGTGGGCTTTCAGAGCTGGTGTGTGTAGTATTAGCTTC
ACCACCCAAAACAGTTGGTCCATTTGAAGCCTCGGGAAGGCTATTACTAA
CTAATGCAGATGATGTTCGTTCCGCAACGTTGATTGCTGAGTTCACAATC
CCTGGAGTCGAGTTGTTTGACGTTGCGACGGAGGAAGATGCAGTTGTTCC
TGAAGGATTATTTGCCGTGCTGGTTCGACCACTGCCGTCCACGGTATCGG
CCGATCGTCTCTGAGTTCGCATTTTTTCTTCTCGGCGCCATTTAGCTCGT
CGGTTTGAAAACCAAACCTGAATACGTGCCTCTGGCAAACCAATTTTATC
AGCAAGCCTTTCTCG
BO01188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11186-PA | 1632 | toy-RA | 883..1629 | 765..19 | 3735 | 100 | Minus |
| CG1464-PB | 1875 | ey-RB | 700..758 | 744..686 | 145 | 89.8 | Minus |
| CG1464-PA | 2517 | ey-RA | 1342..1400 | 744..686 | 145 | 89.8 | Minus |
| CG1464-PC | 2574 | ey-RC | 1399..1457 | 744..686 | 145 | 89.8 | Minus |
| CG1464-PD | 2697 | ey-RD | 1522..1580 | 744..686 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toy-RA | 2287 | CG11186-RA | 1410..2156 | 765..19 | 3735 | 100 | Minus |
| toy-RC | 3870 | CG11186-RC | 1662..2105 | 462..19 | 2220 | 100 | Minus |
| toy-RC | 3870 | CG11186-RC | 1410..1664 | 765..499 | 1145 | 95.5 | Minus |
| ey-RD | 3462 | CG1464-RD | 2036..2114 | 744..666 | 215 | 84.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1004156..1004414 | 719..461 | 1295 | 100 | Minus |
| 4 | 1348131 | 4 | 1005803..1006011 | 317..109 | 1030 | 99.5 | Minus |
| 4 | 1348131 | 4 | 1004470..1004618 | 462..314 | 745 | 100 | Minus |
| 4 | 1348131 | 4 | 1006064..1006157 | 112..19 | 470 | 100 | Minus |
| 4 | 1348131 | 4 | 998658..998717 | 765..706 | 270 | 96.7 | Minus |
| 4 | 1348131 | 4 | 717710..717788 | 744..666 | 215 | 84.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:05:27 has no hits.
BO01188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:23 Download gff for
BO01188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11186-PA | 883..1632 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:38 Download gff for
BO01188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11186-PA | 883..1632 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:13 Download gff for
BO01188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 1410..2156 | 19..765 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:36 Download gff for
BO01188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 1410..2156 | 19..765 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:36 Download gff for
BO01188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1004158..1004412 | 463..717 | 100 | -> | Minus |
| 4 | 1004470..1004618 | 314..462 | 100 | -> | Minus |
| 4 | 1005807..1006009 | 111..313 | 100 | -> | Minus |
| 4 | 1006066..1006157 | 19..110 | 100 | | Minus |
| 4 | 998658..998705 | 718..765 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:13 Download gff for
BO01188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1019284..1019331 | 718..765 | 100 | -> | Minus |
| arm_4 | 1024784..1025038 | 463..717 | 100 | -> | Minus |
| arm_4 | 1025096..1025244 | 314..462 | 100 | -> | Minus |
| arm_4 | 1026433..1026635 | 111..313 | 100 | -> | Minus |
| arm_4 | 1026692..1026783 | 19..110 | 100 | | Minus |
BO01188.5prime Sequence
780 bp (763 high quality bases) assembled on 2005-11-30
> BO01188.5prime
GAAGTTATCAGTCGACATGATGCTAACAACTGAACACATAATGCATGGGC
ATCCCCACTCGTCAGTCGGGCAGAGTACTCTATTTGGGTGCTCCACGGCG
GGCCATAGCGGAATAAATCAGCTGGGCGGCGTATATGTTAATGGCCGGCC
ACTGCCCGATTCAACGCGTCAAAAAATTGTCGAATTGGCTCATTCCGGCG
CACGTCCTTGTGATATTTCAAGAATACTACAAGTGTCCAACGGTTGCGTA
AGCAAAATTTTGGGCAGATATTATGAAACTGGATCGATAAAACCTCGAGC
TATAGGTGGTTCAAAGCCACGAGTAGCTACAACCCCGGTTGTGCAAAAAA
TTGCAGATTACAAACGGGAATGTCCCAGCATATTTGCGTGGGAAATACGA
GATCGACTGCTATCGGAACAAGTTTGCAATAGTGATAACATTCCAAGTGT
TTCATCTATTAATCGAGTCTTACGTAACCTGGCCTCACAAAAGGAGCAGC
AAGCTCAGCAACAAAACGAATCCGTTTATGAAAAGCTTCGCATGTTTAAT
GGCCAAACGGGCGGATGGGCATGGTATCCAAGCAATACAACGACGGCACA
TTTGACGCTACCACCAGCAGCTTCCGTTGTGACATCTCCTGCAAATTTAT
CAGGACAGGCCGATCGGGATGATGTTCAAAAAAGAGAATTACAATTTTCA
GTAGAAGTTTCGCATACAAACTCTCACGATAGTACATCGGATGGAAACTC
TGAACATAATTCATCCGGGGACGAAGACTC
BO01188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11186-PA | 1632 | toy-RA | 1..764 | 17..780 | 3820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toy-RC | 3870 | CG11186-RC | 528..1291 | 17..780 | 3820 | 100 | Plus |
| toy-RA | 2287 | CG11186-RA | 528..1291 | 17..780 | 3820 | 100 | Plus |
| ey-RA | 3282 | CG1464-RA | 622..1024 | 100..502 | 505 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 990252..990502 | 17..267 | 1255 | 100 | Plus |
| 4 | 1348131 | 4 | 996512..996749 | 449..686 | 1190 | 100 | Plus |
| 4 | 1348131 | 4 | 992064..992248 | 266..450 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 997705..997800 | 685..780 | 480 | 100 | Plus |
| 4 | 1348131 | 4 | 710925..711074 | 110..259 | 285 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:56:33 has no hits.
BO01188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:24 Download gff for
BO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11186-PA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:40 Download gff for
BO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11186-PA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:26 Download gff for
BO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..1291 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:14 Download gff for
BO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..1291 | 17..780 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:14 Download gff for
BO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 990252..990502 | 17..267 | 100 | -> | Plus |
| 4 | 992066..992246 | 268..448 | 100 | -> | Plus |
| 4 | 996512..996749 | 449..686 | 100 | -> | Plus |
| 4 | 997707..997800 | 687..780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:26 Download gff for
BO01188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1010878..1011128 | 17..267 | 100 | -> | Plus |
| arm_4 | 1012692..1012872 | 268..448 | 100 | -> | Plus |
| arm_4 | 1017138..1017375 | 449..686 | 100 | -> | Plus |
| arm_4 | 1018333..1018426 | 687..780 | 100 | | Plus |
BO01188.complete Sequence
1663 bp assembled on 2006-11-03
GenBank Submission: FJ629446
> BO01188.complete
GAAGTTATCAGTCGACATGATGCTAACAACTGAACACATAATGCATGGGC
ATCCCCACTCGTCAGTCGGGCAGAGTACTCTATTTGGGTGCTCCACGGCG
GGCCATAGCGGAATAAATCAGCTGGGCGGCGTATATGTTAATGGCCGGCC
ACTGCCCGATTCAACGCGTCAAAAAATTGTCGAATTGGCTCATTCCGGCG
CACGTCCTTGTGATATTTCAAGAATACTACAAGTGTCCAACGGTTGCGTA
AGCAAAATTTTGGGCAGATATTATGAAACTGGATCGATAAAACCTCGAGC
TATAGGTGGTTCAAAGCCACGAGTAGCTACAACCCCGGTTGTGCAAAAAA
TTGCAGATTACAAACGGGAATGTCCCAGCATATTTGCGTGGGAAATACGA
GATCGACTGCTATCGGAACAAGTTTGCAATAGTGATAACATTCCAAGTGT
TTCATCTATTAATCGAGTCTTACGTAACCTGGCCTCACAAAAGGAGCAGC
AAGCTCAGCAACAAAACGAATCCGTTTATGAAAAGCTTCGCATGTTTAAT
GGCCAAACGGGCGGATGGGCATGGTATCCAAGCAATACAACGACGGCACA
TTTGACGCTACCACCAGCAGCTTCCGTTGTGACATCTCCTGCAAATTTAT
CAGGACAGGCCGATCGGGATGATGTTCAAAAAAGAGAATTACAATTTTCA
GTAGAAGTTTCGCATACAAACTCTCACGATAGTACATCGGATGGAAACTC
TGAACATAATTCATCCGGGGACGAAGACTCTCAAATGCGGTTGCGCCTAA
AAAGGAAGTTACAGCGCAATCGGACATCATTTTCTAATGAGCAAATTGAC
AGTCTTGAAAAAGAATTTGAAAGAACACATTATCCCGATGTTTTTGCGCG
AGAAAGGCTTGCTGATAAAATTGGTTTGCCAGAGGCACGTATTCAGGTTT
GGTTTTCAAACCGACGAGCTAAATGGCGCCGAGAAGAAAAAATGCGAACT
CAGAGACGATCGGCCGATACCGTGGACGGCAGTGGTCGAACCAGCACGGC
AAATAATCCTTCAGGAACAACTGCATCTTCCTCCGTCGCAACGTCAAACA
ACTCGACTCCAGGGATTGTGAACTCAGCAATCAACGTTGCGGAACGAACA
TCATCTGCATTAGTTAGTAATAGCCTTCCCGAGGCTTCAAATGGACCAAC
TGTTTTGGGTGGTGAAGCTAATACTACACACACCAGCTCTGAAAGCCCAC
CCCTTCAGCCAGCGGCACCGCGGCTACCCTTAAATTCTGGATTCAACACC
ATGTACTCATCTATTCCACAACCGATTGCAACGATGGCTGAAAATTACAA
CTCCTCATTAGGATCAATGACCCCGTCATGCTTACAACAACGCGATGCCT
ATCCTTACATGTTTCACGATCCGTTATCACTAGGATCTCCCTATGTGTCA
GCCCACCATCGAAACACAGCTTGCAACCCCTCAGCTGCGCACCAACAGCC
CCCTCAGCATGGCGTTTATACCAATAGTTCTCCAATGCCATCATCAAACA
CAGGTGTCATTTCTGCGGGCGTTTCGGTGCCTGTCCAGATTTCAACGCAA
AATGTATCTGACCTAACGGGAAGCAATTACTGGCCACGTCTTCAGGCAAG
CTTTCTAGACCAT
BO01188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toy-RA | 1632 | CG11186-PA | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| toy-RC | 1581 | CG11186-PC | 1..1137 | 17..1165 | 5530 | 99 | Plus |
| toy-RC | 1581 | CG11186-PC | 1135..1578 | 1202..1645 | 2220 | 100 | Plus |
| ey-RA | 2517 | CG1464-PA | 108..510 | 100..502 | 500 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toy-RA | 2287 | CG11186-RA | 528..2156 | 17..1645 | 8145 | 100 | Plus |
| toy-RC | 3870 | CG11186-RC | 528..1664 | 17..1165 | 5530 | 99 | Plus |
| toy-RC | 3870 | CG11186-RC | 1662..2105 | 1202..1645 | 2220 | 100 | Plus |
| ey-RA | 3282 | CG1464-RA | 622..1024 | 100..502 | 500 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1004156..1004414 | 945..1203 | 1295 | 100 | Plus |
| 4 | 1348131 | 4 | 990252..990502 | 17..267 | 1255 | 100 | Plus |
| 4 | 1348131 | 4 | 996512..996749 | 449..686 | 1190 | 100 | Plus |
| 4 | 1348131 | 4 | 1005803..1006011 | 1347..1555 | 1030 | 99.5 | Plus |
| 4 | 1348131 | 4 | 992064..992248 | 266..450 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 997705..997883 | 685..863 | 895 | 100 | Plus |
| 4 | 1348131 | 4 | 1004470..1004618 | 1202..1350 | 745 | 100 | Plus |
| 4 | 1348131 | 4 | 1006064..1006157 | 1552..1645 | 470 | 100 | Plus |
| 4 | 1348131 | 4 | 998621..998717 | 862..958 | 455 | 97.9 | Plus |
| 4 | 1348131 | 4 | 717652..717788 | 862..998 | 310 | 81.8 | Plus |
| 4 | 1348131 | 4 | 710925..711074 | 110..259 | 285 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:13:59 has no hits.
BO01188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:31 Download gff for
BO01188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 1..1632 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:56 Download gff for
BO01188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 525..2153 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:33 Download gff for
BO01188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..2156 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:31 Download gff for
BO01188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 525..2153 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:42 Download gff for
BO01188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| toy-RA | 528..2156 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:42 Download gff for
BO01188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 990252..990502 | 17..267 | 100 | -> | Plus |
| 4 | 992066..992246 | 268..448 | 100 | -> | Plus |
| 4 | 996512..996749 | 449..686 | 100 | -> | Plus |
| 4 | 997707..997883 | 687..863 | 100 | -> | Plus |
| 4 | 998623..998705 | 864..946 | 100 | -> | Plus |
| 4 | 1004158..1004412 | 947..1201 | 100 | -> | Plus |
| 4 | 1004470..1004618 | 1202..1350 | 100 | -> | Plus |
| 4 | 1005807..1006009 | 1351..1553 | 100 | -> | Plus |
| 4 | 1006066..1006157 | 1554..1647 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:33 Download gff for
BO01188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1019249..1019331 | 864..946 | 100 | -> | Plus |
| arm_4 | 1010878..1011128 | 17..267 | 100 | -> | Plus |
| arm_4 | 1012692..1012872 | 268..448 | 100 | -> | Plus |
| arm_4 | 1017138..1017375 | 449..686 | 100 | -> | Plus |
| arm_4 | 1018333..1018509 | 687..863 | 100 | -> | Plus |
| arm_4 | 1024784..1025038 | 947..1201 | 100 | -> | Plus |
| arm_4 | 1025096..1025244 | 1202..1350 | 100 | -> | Plus |
| arm_4 | 1026433..1026635 | 1351..1553 | 100 | -> | Plus |
| arm_4 | 1026692..1026783 | 1554..1647 | 97 | | Plus |
BO01188.pep Sequence
Translation from 16 to 1663
> BO01188.pep
MMLTTEHIMHGHPHSSVGQSTLFGCSTAGHSGINQLGGVYVNGRPLPDST
RQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSK
PRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEQVCNSDNIPSVSSINR
VLRNLASQKEQQAQQQNESVYEKLRMFNGQTGGWAWYPSNTTTAHLTLPP
AASVVTSPANLSGQADRDDVQKRELQFSVEVSHTNSHDSTSDGNSEHNSS
GDEDSQMRLRLKRKLQRNRTSFSNEQIDSLEKEFERTHYPDVFARERLAD
KIGLPEARIQVWFSNRRAKWRREEKMRTQRRSADTVDGSGRTSTANNPSG
TTASSSVATSNNSTPGIVNSAINVAERTSSALVSNSLPEASNGPTVLGGE
ANTTHTSSESPPLQPAAPRLPLNSGFNTMYSSIPQPIATMAENYNSSLGS
MTPSCLQQRDAYPYMFHDPLSLGSPYVSAHHRNTACNPSAAHQQPPQHGV
YTNSSPMPSSNTGVISAGVSVPVQISTQNVSDLTGSNYWPRLQASFLDH
BO01188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| toy-PA | 543 | CG11186-PA | 1..543 | 1..543 | 2831 | 100 | Plus |
| toy-PC | 526 | CG11186-PC | 1..526 | 1..543 | 2708 | 96.9 | Plus |
| ey-PA | 838 | CG1464-PA | 37..177 | 29..169 | 632 | 85.8 | Plus |
| ey-PC | 857 | CG1464-PC | 36..196 | 10..169 | 629 | 77.6 | Plus |
| ey-PD | 898 | CG1464-PD | 77..237 | 10..169 | 629 | 77.6 | Plus |
| ey-PA | 838 | CG1464-PA | 290..689 | 162..481 | 460 | 36.1 | Plus |
| ey-PC | 857 | CG1464-PC | 309..708 | 162..481 | 460 | 36.1 | Plus |
