Clone BO01193 Report

Search the DGRC for BO01193

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:11
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptash2-RC
Protein status:BO01193.pep: validated full length
Sequenced Size:1702

Clone Sequence Records

BO01193.3prime Sequence

812 bp (793 high quality bases) assembled on 2005-11-30

> BO01193.3prime
ATGGTCTAGAAAGCTTGCAAGACCCATATTATCCAAGCGCAGACGTCCAT
CGTGTTCTGTGAGGTAGAGGGTGTCGGCTAAACATTGCTCTGTGATCAGC
TCCTCCACGCGATCGTGCATCCCCTTGGCTTTGTGCTCGACGAGCACCTC
GGGATACTTGAAGGCGGGTCCGAAGTTTACGCTGACCGTTGCACTTTTGT
GGATCGAGATGGCCGGGAAATAGCTGCCGGCATAAATGTCTTCGAATGCC
ACACCCTGCGATTGACCGTTCTTAAAGAACTCGATGCGGCTGCCCTGCAG
GATGTGCAGATTTTTCAGGGTTTCTGTGATCTTGTCCTTATCCTCGTAGT
ACAGATGAGACTTGAACTTGACCAGGGGCCGATCTTTGAATGTGTTGGGC
AGATAGTCGAGCGACGCCTCCTCTGGCAGCTCTATGAGGAATCCCAATGT
ATCGCCCTCCACATAGGCATCACTGTAGTGTTTGCCATGGCTCTCGGTAA
ACTTGGTGCCCTTGCGAGATCTCCAGGAGTAACCGAACTTGTCGTATCCC
AATGGAGCCTGCAAGTTGCCGTACTCCCGGCCCCAGCCAAGTCGCGTGGC
AGCTCCGTCGGGCATCTCTTCGATGGTGACCTCAAAGTACCAGCATCCCC
GGTTCACAGAGTGTGTGGCTCGGACCATGCAGTAACCACGTTCGCCCGTC
ACCGCCAACCGATCCTCGCTTATTTTCAGCTGTGGTGCCCGATCATGCAG
CGCCAGGAGCACAGAATGTGGCACCAGGATGCGGTAGAGCCAGCCGGGGA
TAGGTTTGCCAG

BO01193.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6677-PA 1872 ash2-RA 1076..1869 812..19 3970 100 Minus
CG6677-PB 1053 ash2-RB 257..1050 812..19 3970 100 Minus
CG6677-PC 1671 ash2-RC 875..1668 812..19 3970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RE 1271 CG6677-RE 301..1094 812..19 3970 100 Minus
ash2-RC 1949 CG6677-RC 979..1772 812..19 3970 100 Minus
ash2-RB 1413 CG6677-RB 443..1236 812..19 3970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24652310..24652590 659..379 1405 100 Minus
3R 32079331 3R 24652781..24653039 379..121 1295 100 Minus
3R 32079331 3R 24652089..24652241 812..660 765 100 Minus
3R 32079331 3R 24653097..24653199 121..19 515 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:11:44 has no hits.

BO01193.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:33 Download gff for BO01193.3prime
Subject Subject Range Query Range Percent Splice Strand
ash2-PB 257..1053 18..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:54 Download gff for BO01193.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6677-PC 875..1671 18..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:49 Download gff for BO01193.3prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 443..1236 19..812 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:51:41 Download gff for BO01193.3prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RB 443..1236 19..812 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:41 Download gff for BO01193.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24652310..24652590 379..659 100 -> Minus
3R 24652782..24653039 121..378 100 -> Minus
3R 24653098..24653199 19..120 100   Minus
3R 24652089..24652241 660..812 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:49 Download gff for BO01193.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20478504..20478761 121..378 100 -> Minus
arm_3R 20478820..20478921 19..120 100   Minus
arm_3R 20477811..20477963 660..812 100 -> Minus
arm_3R 20478032..20478312 379..659 100 -> Minus

BO01193.5prime Sequence

729 bp (728 high quality bases) assembled on 2005-11-30

> BO01193.5prime
GAAGTTATCAGTCGACATGGAGGACAGCCAAATGGACACAAGCTCGCCGA
CAGAGTCCAGCTCCGAGGTGAACTTCACTGCGGAGGAGGATAAATCGCAG
GAAACGCGTTCCGCAGCCGGCGTTTGTTACTGCGGCAAGGAGCGCAATCT
CAATATTGTGGAGCTGCTGTGTGCCACCTGTTCACGCTGGGTGCACGAGA
CCTGCGTTTCCTACCAGCTTGGTAAGGGTAAACTTCTGCCCTTCATCACC
AACTATGTGTTCGTCTGTAAAAATTGCTCTGCCAGCGGATTGGAGAGCTT
TCGCAAGAGCCAGGCTACCATATCCCAGATGTGCCACTGTGCCATTGCCA
ACATGCAGCAGGCGGCTTCCAGGGACGGACGTCGCCAGATTCAGTTTAGC
AAGGACAAGGAGATCATACCGTACATCGAACAGTACTGGGAGGCCATGAC
CACCATGCCACGCAGACTCACCCAGTCCTGGTACAGCACCGTCCAGCGAT
CTTTGGTCAAGGATGTGCAGACCCTGTTCACCTACGAGGAGCATGCGGAA
CATGGCGCCATGTACGGACTATTCCATCAGGATCTGCGAATCATCAAGCC
CAACTACGAGAGCATGAGCAAGAGCGGCGCCCTGCGACTCACCGACGATG
GATATACTCAAGCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTT
CCCGGCACGGATTCGGGTCCCACGGGCAA

BO01193.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6677-PC 1671 ash2-RC 1..713 17..729 3565 100 Plus
CG6677-PA 1872 ash2-RA 208..914 23..729 3535 100 Plus
CG6677-PB 1053 ash2-RB 29..95 663..729 335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RC 1949 CG6677-RC 105..817 17..729 3565 100 Plus
ash2-RE 1271 CG6677-RE 73..139 663..729 335 100 Plus
ash2-RB 1413 CG6677-RB 215..281 663..729 335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24650650..24650994 318..662 1725 100 Plus
3R 32079331 3R 24650404..24650589 132..317 930 100 Plus
3R 32079331 3R 24650229..24650344 17..132 580 100 Plus
3R 32079331 3R 24651859..24651927 661..729 345 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:26:10 has no hits.

BO01193.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:34 Download gff for BO01193.5prime
Subject Subject Range Query Range Percent Splice Strand
ash2-PC 1..711 17..727 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:55 Download gff for BO01193.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6677-PC 1..711 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:33:45 Download gff for BO01193.5prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 94..815 5..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:45 Download gff for BO01193.5prime
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 94..815 5..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:45 Download gff for BO01193.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24651861..24651925 663..727 100   Plus
3R 24650218..24650344 5..132 96 -> Plus
3R 24650405..24650589 133..317 100 -> Plus
3R 24650650..24650994 318..662 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:33:45 Download gff for BO01193.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20475940..20476066 5..132 96 -> Plus
arm_3R 20476127..20476311 133..317 100 -> Plus
arm_3R 20476372..20476716 318..662 100 -> Plus
arm_3R 20477583..20477647 663..727 100   Plus

BO01193.complete Sequence

1702 bp (1702 high quality bases) assembled on 2006-03-31

GenBank Submission: FJ629447

> BO01193.complete
GAAGTTATCAGTCGACATGGAGGACAGCCAAATGGACACAAGCTCGCCGA
CAGAGTCCAGCTCCGAGGTGAACTTCACTGCGGAGGAGGATAAATCGCAG
GAAACGCGTTCCGCAGCCGGCGTTTGTTACTGCGGCAAGGAGCGCAATCT
CAATATTGTGGAGCTGCTGTGTGCCACCTGTTCACGCTGGGTGCACGAGA
CCTGCGTTTCCTACCAGCTTGGTAAGGGTAAACTTCTGCCCTTCATCACC
AACTATGTGTTCGTCTGTAAAAATTGCTCTGCCAGCGGATTGGAGAGCTT
TCGCAAGAGCCAGGCTACCATATCCCAGATGTGCCACTGTGCCATTGCCA
ACATGCAGCAGGCGGCTTCCAGGGACGGACGTCGCCAGATTCAGTTTAGC
AAGGACAAGGAGATCATACCGTACATCGAACAGTACTGGGAGGCCATGAC
CACCATGCCACGCAGACTCACCCAGTCCTGGTACAGCACCGTCCAGCGAT
CTTTGGTCAAGGATGTGCAGACCCTGTTCACCTACGAGGAGCATGCGGAA
CATGGCGCCATGTACGGACTATTCCATCAGGATCTGCGAATCATCAAGCC
CAACTACGAGAGCATGAGCAAGAGCGGCGCCCTGCGACTCACCGACGATG
GATATACTCAAGCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTT
CCCGGCACGGATTCGGGTCCCACGGGCAAGAAGGGTCGGCCCAGTTCCGA
TATTACGGCCAATGTAAAGTTGCCACCGCATGGCTATCCATTGGAACACC
CCTTCAACAAGGATGGCTATCGTTATATACTCGCCGAACCGGATCCACAT
GCTCCATTTCGTCAGGAGTTCGACGAGAGCTCCGATTGGGCTGGCAAACC
TATCCCCGGCTGGCTCTACCGCATCCTGGTGCCACATTCTGTGCTCCTGG
CGCTGCATGATCGGGCACCACAGCTGAAAATAAGCGAGGATCGGTTGGCG
GTGACGGGCGAACGTGGTTACTGCATGGTCCGAGCCACACACTCTGTGAA
CCGGGGATGCTGGTACTTTGAGGTCACCATCGAAGAGATGCCCGACGGAG
CTGCCACGCGACTTGGCTGGGGCCGGGAGTACGGCAACTTGCAGGCTCCA
TTGGGATACGACAAGTTCGGTTACTCCTGGAGATCTCGCAAGGGCACCAA
GTTTACCGAGAGCCATGGCAAACACTACAGTGATGCCTATGTGGAGGGCG
ATACATTGGGATTCCTCATAGAGCTGCCAGAGGAGGCGTCGCTCGACTAT
CTGCCCAACACATTCAAAGATCGGCCCCTGGTCAAGTTCAAGTCTCATCT
GTACTACGAGGATAAGGACAAGATCACAGAAACCCTGAAAAATCTGCACA
TCCTGCAGGGCAGCCGCATCGAGTTCTTTAAGAACGGTCAATCGCAGGGT
GTGGCATTCGAAGACATTTATGCCGGCAGCTATTTCCCGGCCATCTCGAT
CCACAAAAGTGCAACGGTCAGCGTAAACTTCGGACCCGCCTTCAAGTATC
CCGAGGTGCTCGTCGAGCACAAAGCCAAGGGGATGCACGATCGCGTGGAG
GAGCTGATCACAGAGCAATGTTTAGCCGACACCCTCTACCTCACAGAACA
CGATGGACGTCTGCGCTTGGATAATATGGGTCTTGCAAGCTTTCTAGACC
AT

BO01193.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RC 1671 CG6677-PC 1..1668 17..1684 8340 100 Plus
ash2-RB 1053 CG6677-PB 29..1050 663..1684 5110 100 Plus
ash2-RE 663 CG6677-PE 1..660 1025..1684 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-RC 1949 CG6677-RC 105..1772 17..1684 8340 100 Plus
ash2-RE 1271 CG6677-RE 73..1094 663..1684 5110 100 Plus
ash2-RB 1413 CG6677-RB 215..1236 663..1684 5110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24651859..24652241 661..1043 1915 100 Plus
3R 32079331 3R 24650650..24650994 318..662 1725 100 Plus
3R 32079331 3R 24652310..24652590 1044..1324 1405 100 Plus
3R 32079331 3R 24652781..24653039 1324..1582 1295 100 Plus
3R 32079331 3R 24650404..24650589 132..317 930 100 Plus
3R 32079331 3R 24650229..24650344 17..132 580 100 Plus
3R 32079331 3R 24653097..24653199 1582..1684 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:59:31 has no hits.

BO01193.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:15 Download gff for BO01193.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 1..1671 17..1685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:24 Download gff for BO01193.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 131..1809 5..1684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:12 Download gff for BO01193.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 105..1772 17..1686 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:16 Download gff for BO01193.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 131..1809 5..1684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:40 Download gff for BO01193.complete
Subject Subject Range Query Range Percent Splice Strand
ash2-RC 105..1772 17..1686 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:40 Download gff for BO01193.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24653098..24653199 1583..1686 98   Plus
3R 24650229..24650344 17..132 100 -> Plus
3R 24650405..24650589 133..317 100 -> Plus
3R 24650650..24650994 318..662 100 -> Plus
3R 24651861..24652241 663..1043 100 -> Plus
3R 24652310..24652590 1044..1324 100 -> Plus
3R 24652782..24653039 1325..1582 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:12 Download gff for BO01193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20478032..20478312 1044..1324 100 -> Plus
arm_3R 20475951..20476066 17..132 100 -> Plus
arm_3R 20476127..20476311 133..317 100 -> Plus
arm_3R 20476372..20476716 318..662 100 -> Plus
arm_3R 20477583..20477963 663..1043 100 -> Plus
arm_3R 20478504..20478761 1325..1582 100 -> Plus
arm_3R 20478820..20478921 1583..1686 98   Plus

BO01193.pep Sequence

Translation from 16 to 1702

> BO01193.pep
MEDSQMDTSSPTESSSEVNFTAEEDKSQETRSAAGVCYCGKERNLNIVEL
LCATCSRWVHETCVSYQLGKGKLLPFITNYVFVCKNCSASGLESFRKSQA
TISQMCHCAIANMQQAASRDGRRQIQFSKDKEIIPYIEQYWEAMTTMPRR
LTQSWYSTVQRSLVKDVQTLFTYEEHAEHGAMYGLFHQDLRIIKPNYESM
SKSGALRLTDDGYTQASLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANV
KLPPHGYPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWL
YRILVPHSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWY
FEVTIEEMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESH
GKHYSDAYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDK
DKITETLKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSAT
VSVNFGPAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLR
LDNMGLASFLDH

BO01193.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
ash2-PC 556 CG6677-PC 1..556 1..556 2978 100 Plus
ash2-PB 350 CG6677-PB 9..350 215..556 1841 99.4 Plus
ash2-PE 220 CG6677-PE 1..220 337..556 1179 100 Plus