Clone Sequence Records
BO01193.3prime Sequence
812 bp (793 high quality bases) assembled on 2005-11-30
> BO01193.3prime
ATGGTCTAGAAAGCTTGCAAGACCCATATTATCCAAGCGCAGACGTCCAT
CGTGTTCTGTGAGGTAGAGGGTGTCGGCTAAACATTGCTCTGTGATCAGC
TCCTCCACGCGATCGTGCATCCCCTTGGCTTTGTGCTCGACGAGCACCTC
GGGATACTTGAAGGCGGGTCCGAAGTTTACGCTGACCGTTGCACTTTTGT
GGATCGAGATGGCCGGGAAATAGCTGCCGGCATAAATGTCTTCGAATGCC
ACACCCTGCGATTGACCGTTCTTAAAGAACTCGATGCGGCTGCCCTGCAG
GATGTGCAGATTTTTCAGGGTTTCTGTGATCTTGTCCTTATCCTCGTAGT
ACAGATGAGACTTGAACTTGACCAGGGGCCGATCTTTGAATGTGTTGGGC
AGATAGTCGAGCGACGCCTCCTCTGGCAGCTCTATGAGGAATCCCAATGT
ATCGCCCTCCACATAGGCATCACTGTAGTGTTTGCCATGGCTCTCGGTAA
ACTTGGTGCCCTTGCGAGATCTCCAGGAGTAACCGAACTTGTCGTATCCC
AATGGAGCCTGCAAGTTGCCGTACTCCCGGCCCCAGCCAAGTCGCGTGGC
AGCTCCGTCGGGCATCTCTTCGATGGTGACCTCAAAGTACCAGCATCCCC
GGTTCACAGAGTGTGTGGCTCGGACCATGCAGTAACCACGTTCGCCCGTC
ACCGCCAACCGATCCTCGCTTATTTTCAGCTGTGGTGCCCGATCATGCAG
CGCCAGGAGCACAGAATGTGGCACCAGGATGCGGTAGAGCCAGCCGGGGA
TAGGTTTGCCAG
BO01193.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6677-PA | 1872 | ash2-RA | 1076..1869 | 812..19 | 3970 | 100 | Minus |
CG6677-PB | 1053 | ash2-RB | 257..1050 | 812..19 | 3970 | 100 | Minus |
CG6677-PC | 1671 | ash2-RC | 875..1668 | 812..19 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RE | 1271 | CG6677-RE | 301..1094 | 812..19 | 3970 | 100 | Minus |
ash2-RC | 1949 | CG6677-RC | 979..1772 | 812..19 | 3970 | 100 | Minus |
ash2-RB | 1413 | CG6677-RB | 443..1236 | 812..19 | 3970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:11:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24652310..24652590 | 659..379 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 24652781..24653039 | 379..121 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 24652089..24652241 | 812..660 | 765 | 100 | Minus |
3R | 32079331 | 3R | 24653097..24653199 | 121..19 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:11:44 has no hits.
BO01193.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:33 Download gff for
BO01193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-PB | 257..1053 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:54 Download gff for
BO01193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6677-PC | 875..1671 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:47:49 Download gff for
BO01193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 443..1236 | 19..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:51:41 Download gff for
BO01193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RB | 443..1236 | 19..812 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:51:41 Download gff for
BO01193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24652310..24652590 | 379..659 | 100 | -> | Minus |
3R | 24652782..24653039 | 121..378 | 100 | -> | Minus |
3R | 24653098..24653199 | 19..120 | 100 | | Minus |
3R | 24652089..24652241 | 660..812 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:47:49 Download gff for
BO01193.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20478504..20478761 | 121..378 | 100 | -> | Minus |
arm_3R | 20478820..20478921 | 19..120 | 100 | | Minus |
arm_3R | 20477811..20477963 | 660..812 | 100 | -> | Minus |
arm_3R | 20478032..20478312 | 379..659 | 100 | -> | Minus |
BO01193.5prime Sequence
729 bp (728 high quality bases) assembled on 2005-11-30
> BO01193.5prime
GAAGTTATCAGTCGACATGGAGGACAGCCAAATGGACACAAGCTCGCCGA
CAGAGTCCAGCTCCGAGGTGAACTTCACTGCGGAGGAGGATAAATCGCAG
GAAACGCGTTCCGCAGCCGGCGTTTGTTACTGCGGCAAGGAGCGCAATCT
CAATATTGTGGAGCTGCTGTGTGCCACCTGTTCACGCTGGGTGCACGAGA
CCTGCGTTTCCTACCAGCTTGGTAAGGGTAAACTTCTGCCCTTCATCACC
AACTATGTGTTCGTCTGTAAAAATTGCTCTGCCAGCGGATTGGAGAGCTT
TCGCAAGAGCCAGGCTACCATATCCCAGATGTGCCACTGTGCCATTGCCA
ACATGCAGCAGGCGGCTTCCAGGGACGGACGTCGCCAGATTCAGTTTAGC
AAGGACAAGGAGATCATACCGTACATCGAACAGTACTGGGAGGCCATGAC
CACCATGCCACGCAGACTCACCCAGTCCTGGTACAGCACCGTCCAGCGAT
CTTTGGTCAAGGATGTGCAGACCCTGTTCACCTACGAGGAGCATGCGGAA
CATGGCGCCATGTACGGACTATTCCATCAGGATCTGCGAATCATCAAGCC
CAACTACGAGAGCATGAGCAAGAGCGGCGCCCTGCGACTCACCGACGATG
GATATACTCAAGCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTT
CCCGGCACGGATTCGGGTCCCACGGGCAA
BO01193.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6677-PC | 1671 | ash2-RC | 1..713 | 17..729 | 3565 | 100 | Plus |
CG6677-PA | 1872 | ash2-RA | 208..914 | 23..729 | 3535 | 100 | Plus |
CG6677-PB | 1053 | ash2-RB | 29..95 | 663..729 | 335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RC | 1949 | CG6677-RC | 105..817 | 17..729 | 3565 | 100 | Plus |
ash2-RE | 1271 | CG6677-RE | 73..139 | 663..729 | 335 | 100 | Plus |
ash2-RB | 1413 | CG6677-RB | 215..281 | 663..729 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24650650..24650994 | 318..662 | 1725 | 100 | Plus |
3R | 32079331 | 3R | 24650404..24650589 | 132..317 | 930 | 100 | Plus |
3R | 32079331 | 3R | 24650229..24650344 | 17..132 | 580 | 100 | Plus |
3R | 32079331 | 3R | 24651859..24651927 | 661..729 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:26:10 has no hits.
BO01193.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:34 Download gff for
BO01193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-PC | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:20:55 Download gff for
BO01193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6677-PC | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:33:45 Download gff for
BO01193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RC | 94..815 | 5..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:45 Download gff for
BO01193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RC | 94..815 | 5..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:45 Download gff for
BO01193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24651861..24651925 | 663..727 | 100 | | Plus |
3R | 24650218..24650344 | 5..132 | 96 | -> | Plus |
3R | 24650405..24650589 | 133..317 | 100 | -> | Plus |
3R | 24650650..24650994 | 318..662 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:33:45 Download gff for
BO01193.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20475940..20476066 | 5..132 | 96 | -> | Plus |
arm_3R | 20476127..20476311 | 133..317 | 100 | -> | Plus |
arm_3R | 20476372..20476716 | 318..662 | 100 | -> | Plus |
arm_3R | 20477583..20477647 | 663..727 | 100 | | Plus |
BO01193.complete Sequence
1702 bp (1702 high quality bases) assembled on 2006-03-31
GenBank Submission: FJ629447
> BO01193.complete
GAAGTTATCAGTCGACATGGAGGACAGCCAAATGGACACAAGCTCGCCGA
CAGAGTCCAGCTCCGAGGTGAACTTCACTGCGGAGGAGGATAAATCGCAG
GAAACGCGTTCCGCAGCCGGCGTTTGTTACTGCGGCAAGGAGCGCAATCT
CAATATTGTGGAGCTGCTGTGTGCCACCTGTTCACGCTGGGTGCACGAGA
CCTGCGTTTCCTACCAGCTTGGTAAGGGTAAACTTCTGCCCTTCATCACC
AACTATGTGTTCGTCTGTAAAAATTGCTCTGCCAGCGGATTGGAGAGCTT
TCGCAAGAGCCAGGCTACCATATCCCAGATGTGCCACTGTGCCATTGCCA
ACATGCAGCAGGCGGCTTCCAGGGACGGACGTCGCCAGATTCAGTTTAGC
AAGGACAAGGAGATCATACCGTACATCGAACAGTACTGGGAGGCCATGAC
CACCATGCCACGCAGACTCACCCAGTCCTGGTACAGCACCGTCCAGCGAT
CTTTGGTCAAGGATGTGCAGACCCTGTTCACCTACGAGGAGCATGCGGAA
CATGGCGCCATGTACGGACTATTCCATCAGGATCTGCGAATCATCAAGCC
CAACTACGAGAGCATGAGCAAGAGCGGCGCCCTGCGACTCACCGACGATG
GATATACTCAAGCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTT
CCCGGCACGGATTCGGGTCCCACGGGCAAGAAGGGTCGGCCCAGTTCCGA
TATTACGGCCAATGTAAAGTTGCCACCGCATGGCTATCCATTGGAACACC
CCTTCAACAAGGATGGCTATCGTTATATACTCGCCGAACCGGATCCACAT
GCTCCATTTCGTCAGGAGTTCGACGAGAGCTCCGATTGGGCTGGCAAACC
TATCCCCGGCTGGCTCTACCGCATCCTGGTGCCACATTCTGTGCTCCTGG
CGCTGCATGATCGGGCACCACAGCTGAAAATAAGCGAGGATCGGTTGGCG
GTGACGGGCGAACGTGGTTACTGCATGGTCCGAGCCACACACTCTGTGAA
CCGGGGATGCTGGTACTTTGAGGTCACCATCGAAGAGATGCCCGACGGAG
CTGCCACGCGACTTGGCTGGGGCCGGGAGTACGGCAACTTGCAGGCTCCA
TTGGGATACGACAAGTTCGGTTACTCCTGGAGATCTCGCAAGGGCACCAA
GTTTACCGAGAGCCATGGCAAACACTACAGTGATGCCTATGTGGAGGGCG
ATACATTGGGATTCCTCATAGAGCTGCCAGAGGAGGCGTCGCTCGACTAT
CTGCCCAACACATTCAAAGATCGGCCCCTGGTCAAGTTCAAGTCTCATCT
GTACTACGAGGATAAGGACAAGATCACAGAAACCCTGAAAAATCTGCACA
TCCTGCAGGGCAGCCGCATCGAGTTCTTTAAGAACGGTCAATCGCAGGGT
GTGGCATTCGAAGACATTTATGCCGGCAGCTATTTCCCGGCCATCTCGAT
CCACAAAAGTGCAACGGTCAGCGTAAACTTCGGACCCGCCTTCAAGTATC
CCGAGGTGCTCGTCGAGCACAAAGCCAAGGGGATGCACGATCGCGTGGAG
GAGCTGATCACAGAGCAATGTTTAGCCGACACCCTCTACCTCACAGAACA
CGATGGACGTCTGCGCTTGGATAATATGGGTCTTGCAAGCTTTCTAGACC
AT
BO01193.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RC | 1671 | CG6677-PC | 1..1668 | 17..1684 | 8340 | 100 | Plus |
ash2-RB | 1053 | CG6677-PB | 29..1050 | 663..1684 | 5110 | 100 | Plus |
ash2-RE | 663 | CG6677-PE | 1..660 | 1025..1684 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-RC | 1949 | CG6677-RC | 105..1772 | 17..1684 | 8340 | 100 | Plus |
ash2-RE | 1271 | CG6677-RE | 73..1094 | 663..1684 | 5110 | 100 | Plus |
ash2-RB | 1413 | CG6677-RB | 215..1236 | 663..1684 | 5110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24651859..24652241 | 661..1043 | 1915 | 100 | Plus |
3R | 32079331 | 3R | 24650650..24650994 | 318..662 | 1725 | 100 | Plus |
3R | 32079331 | 3R | 24652310..24652590 | 1044..1324 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 24652781..24653039 | 1324..1582 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 24650404..24650589 | 132..317 | 930 | 100 | Plus |
3R | 32079331 | 3R | 24650229..24650344 | 17..132 | 580 | 100 | Plus |
3R | 32079331 | 3R | 24653097..24653199 | 1582..1684 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:59:31 has no hits.
BO01193.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:15 Download gff for
BO01193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RC | 1..1671 | 17..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:24 Download gff for
BO01193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RC | 131..1809 | 5..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:12 Download gff for
BO01193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RC | 105..1772 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:16 Download gff for
BO01193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RC | 131..1809 | 5..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:40 Download gff for
BO01193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ash2-RC | 105..1772 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:40 Download gff for
BO01193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24653098..24653199 | 1583..1686 | 98 | | Plus |
3R | 24650229..24650344 | 17..132 | 100 | -> | Plus |
3R | 24650405..24650589 | 133..317 | 100 | -> | Plus |
3R | 24650650..24650994 | 318..662 | 100 | -> | Plus |
3R | 24651861..24652241 | 663..1043 | 100 | -> | Plus |
3R | 24652310..24652590 | 1044..1324 | 100 | -> | Plus |
3R | 24652782..24653039 | 1325..1582 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:12 Download gff for
BO01193.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20478032..20478312 | 1044..1324 | 100 | -> | Plus |
arm_3R | 20475951..20476066 | 17..132 | 100 | -> | Plus |
arm_3R | 20476127..20476311 | 133..317 | 100 | -> | Plus |
arm_3R | 20476372..20476716 | 318..662 | 100 | -> | Plus |
arm_3R | 20477583..20477963 | 663..1043 | 100 | -> | Plus |
arm_3R | 20478504..20478761 | 1325..1582 | 100 | -> | Plus |
arm_3R | 20478820..20478921 | 1583..1686 | 98 | | Plus |
BO01193.pep Sequence
Translation from 16 to 1702
> BO01193.pep
MEDSQMDTSSPTESSSEVNFTAEEDKSQETRSAAGVCYCGKERNLNIVEL
LCATCSRWVHETCVSYQLGKGKLLPFITNYVFVCKNCSASGLESFRKSQA
TISQMCHCAIANMQQAASRDGRRQIQFSKDKEIIPYIEQYWEAMTTMPRR
LTQSWYSTVQRSLVKDVQTLFTYEEHAEHGAMYGLFHQDLRIIKPNYESM
SKSGALRLTDDGYTQASLSKNNRQKRKFPGTDSGPTGKKGRPSSDITANV
KLPPHGYPLEHPFNKDGYRYILAEPDPHAPFRQEFDESSDWAGKPIPGWL
YRILVPHSVLLALHDRAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWY
FEVTIEEMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESH
GKHYSDAYVEGDTLGFLIELPEEASLDYLPNTFKDRPLVKFKSHLYYEDK
DKITETLKNLHILQGSRIEFFKNGQSQGVAFEDIYAGSYFPAISIHKSAT
VSVNFGPAFKYPEVLVEHKAKGMHDRVEELITEQCLADTLYLTEHDGRLR
LDNMGLASFLDH
BO01193.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ash2-PC | 556 | CG6677-PC | 1..556 | 1..556 | 2978 | 100 | Plus |
ash2-PB | 350 | CG6677-PB | 9..350 | 215..556 | 1841 | 99.4 | Plus |
ash2-PE | 220 | CG6677-PE | 1..220 | 337..556 | 1179 | 100 | Plus |