Clone Sequence Records
BO01202.3prime Sequence
726 bp (725 high quality bases) assembled on 2005-11-30
> BO01202.3prime
ATGGTCTAGAAAGCTTGCTAACCCACCGATAATCACTTCCTGTTGGGCCT
CATCCTCCATGTCAGGAATCTCCTGCTTATGCACTATCATCCCATCGCTG
CTGGTCTGGCGAGGAGCAGTTTGGCCGTACTTTTGGTGTATGCCGCGGTG
ACGCTTGAGTGCAAAACGATCAGCGAATGCTGCAGAGCAAATCTCGCACT
TGTAGGGTTTTTCTCCGGAGTGCACCTTTGCGTGGTTCTTAAGGTGCGCC
GCCTGAGAAAAGGCCGATCCACAAATTTCACACTTGTATGGCTTTTCGCC
CGTGTGAATGCGCCTATGATTCCAAAGAGTAGCGTGGCGCGCAAATCCTT
TGTCGCAAACACCGCACACATAGGGCCGCTCGCCACTGTGCGTGCGTTCA
TGGTTCTTGAGGTGTGGTGACTGTGAAAACTGCATGCCGCAGGTTTGGCA
TTTATAGGGTTTCTCGCCTGTATGAATGCGCGCGTGGTTTTTCAAATATA
CGGCTTTAGCAAAGGCCAATCCACAGATGCTGCACTTGTAGTTTTTTTCA
CCGCTGTGCAGCTTTTTATGGGACCACAGACTTGAGTAACGTGAAAACAG
ACCACCACATATATTACAACTGAAGGGTTTGGACGGATTTTCAGTTTTAA
CAGTAACTGATTGCTTTACCGATCCGCCCACCCCGCTGTGTGAAGCATGG
GAGTGCTGCCCCACTAGCACCACGCC
BO01202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1832-PA | 1686 | CG1832-RA | 976..1683 | 726..19 | 3540 | 100 | Minus |
CG1832-PB | 1701 | CG1832-RB | 1077..1698 | 640..19 | 3110 | 100 | Minus |
CG1832-PB | 1701 | CG1832-RB | 976..1061 | 726..641 | 430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-RA | 2636 | CG1832-RA | 1340..2047 | 726..19 | 3540 | 100 | Minus |
Clamp-RB | 2897 | CG1832-RB | 1340..2062 | 726..19 | 3380 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22166555..22166991 | 19..455 | 2170 | 99.8 | Plus |
2L | 23513712 | 2L | 22167050..22167238 | 452..640 | 945 | 100 | Plus |
2L | 23513712 | 2L | 22167303..22167388 | 641..726 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:07:45 has no hits.
BO01202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:41 Download gff for
BO01202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-PA | 976..1686 | 18..726 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:05 Download gff for
BO01202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-PA | 976..1686 | 18..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:11 Download gff for
BO01202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 1340..2047 | 19..726 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:28 Download gff for
BO01202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clamp-RA | 1340..2047 | 19..726 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:28 Download gff for
BO01202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22166555..22166987 | 19..451 | 100 | <- | Plus |
2L | 22167050..22167238 | 452..640 | 100 | <- | Plus |
2L | 22167303..22167388 | 641..726 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:11 Download gff for
BO01202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22166555..22166987 | 19..451 | 100 | <- | Plus |
arm_2L | 22167050..22167238 | 452..640 | 100 | <- | Plus |
arm_2L | 22167303..22167388 | 641..726 | 100 | | Plus |
BO01202.5prime Sequence
824 bp (700 high quality bases) assembled on 2005-11-30
> BO01202.5prime
GAAGTTATCAGTCGACATGGAAGACCTTACCAAAAACATTATCTTCACAA
ATGCCATTAATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGC
ACCATTCTTAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCC
TACCTTCTATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCAC
AGCTGGCCACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTG
GGCGGATACAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGC
AGCTCTTGGCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCA
ATCAAAATAAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTAAG
TGTGACGTATGTTCAGATATGTTCCCTCATTTGGCACTTCTTAATGCTCA
TAAGCGGATGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACG
CCCAAGCGGGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTG
CAGGCACAGAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGT
GTCTTCTGACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGC
AACATGAGTCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTG
CAGCAGTCCAAACGCAAAGGTCCAAAAGCAGGTGCGCTGCGAGTCCTGCA
TGCAGGCTGAACAAACAGCGCAACAACAACAGCAGCTCTTCGTCCCCCAA
GAAGGTCAATTGGGCGCATCCCCG
BO01202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1832-PA | 1686 | CG1832-RA | 1..710 | 17..726 | 3550 | 100 | Plus |
CG1832-PB | 1701 | CG1832-RB | 1..710 | 17..726 | 3550 | 100 | Plus |
CG1832-PA | 1686 | CG1832-RA | 708..792 | 725..809 | 375 | 97.6 | Plus |
CG1832-PB | 1701 | CG1832-RB | 708..792 | 725..809 | 375 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-RB | 2897 | CG1832-RB | 364..1168 | 16..822 | 3940 | 99.4 | Plus |
Clamp-RA | 2636 | CG1832-RA | 364..1168 | 16..822 | 3940 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22167635..22168066 | 806..374 | 2085 | 99.3 | Minus |
2L | 23513712 | 2L | 22168120..22168320 | 373..173 | 1005 | 100 | Minus |
2L | 23513712 | 2L | 22168379..22168536 | 173..16 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:36:17 has no hits.
BO01202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:42 Download gff for
BO01202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-PA | 1..805 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:06 Download gff for
BO01202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-PB | 1..805 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:25 Download gff for
BO01202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 364..1169 | 16..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:56 Download gff for
BO01202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clamp-RA | 364..1169 | 16..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:56 Download gff for
BO01202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22167630..22168066 | 374..812 | 98 | <- | Minus |
2L | 22168120..22168320 | 173..373 | 100 | <- | Minus |
2L | 22168380..22168536 | 16..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:25 Download gff for
BO01202.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22167630..22168066 | 374..812 | 98 | <- | Minus |
arm_2L | 22168120..22168320 | 173..373 | 100 | <- | Minus |
arm_2L | 22168380..22168536 | 16..172 | 100 | | Minus |
BO01202.complete Sequence
1717 bp (1717 high quality bases) assembled on 2008-08-14
GenBank Submission: FJ629448
> BO01202.complete
GAAGTTATCAGTCGACATGGAAGACCTTACCAAAAACATTATCTTCACAA
ATGCCATTAATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGC
ACCATTCTTAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCC
TACCTTCTATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCAC
AGCTGGCCACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTG
GGCGGATACAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGC
AGCTCTTGGCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCA
ATCAAAATAAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTAAG
TGTGACGTATGTTCAGATATGTTCCCTCATTTGGCACTTCTTAATGCTCA
TAAGCGGATGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACG
CCCAAGCGGGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTG
CAGGCACAGAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGT
GTCTTCTGACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGC
AACATGAGTCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTG
CAGCAGTCCAAACGCAAAGGTCCAAAGCAGGTGCGCTGCGAGTCCTGCAT
GCAGGCTGAACAAACAGCGCAACAACAACAGCAGCTCTTCGTCGCCCAAG
ACGGTCAAATGGCGCATCCCGTGCAAATCATATCAACGACTCCTCAGGCC
CAAGCACAACTTCAGCAAATTGTGGCTGCACAGACTGGCGGTACAACGCC
AAAGCGAGAGGCGAGCAGTGGGTCTGGCCATCATCCTGTGAAAAAACGAA
ATTCCCAGCAGATGACCAAATGCCAGAAATGCAATGGCTCCGGCGTGGTG
CTAGTGGGGCAGCACTCCCATGCTTCACACAGCGGGGTGGGCGGATCGGT
AAAGCAATCAGTTACTGTTAAAACTGAAAATCCGTCCAAACCCTTCAGTT
GTAATATATGTGGTGGTCTGTTTTCACGTTACTCAAGTCTGTGGTCCCAT
AAAAAGCTGCACAGCGGTGAAAAAAACTACAAGTGCAGCATCTGTGGATT
GGCCTTTGCTAAAGCCGTATATTTGAAAAACCACGCGCGCATTCATACAG
GCGAGAAACCCTATAAATGCCAAACCTGCGGCATGCAGTTTTCACAGTCA
CCACACCTCAAGAACCATGAACGCACGCACAGTGGCGAGCGGCCCTATGT
GTGCGGTGTTTGCGACAAAGGATTTGCGCGCCACGCTACTCTTTGGAATC
ATAGGCGCATTCACACGGGCGAAAAGCCATACAAGTGTGAAATTTGTGGA
TCGGCCTTTTCTCAGGCGGCGCACCTTAAGAACCACGCAAAGGTGCACTC
CGGAGAAAAACCCTACAAGTGCGAGATTTGCTCTGCAGCATTCGCTGATC
GTTTTGCACTCAAGCGTCACCGCGGCATACACCAAAAGTACGGCCAAACT
GCTCCTCGCCAGACCAGCAGCGATGGGATGATAGTGCATAAGCAGGAGAT
TCCTGACATGGAGGATGAGGCCCAACAGGAAGTGATTATCGGTGGGTTAG
CAAGCTTTCTAGACCAT
BO01202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-RA | 1686 | CG1832-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Clamp-RB | 1701 | CG1832-PB | 1..1698 | 17..1699 | 8230 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-RA | 2636 | CG1832-RA | 364..2047 | 16..1699 | 8420 | 100 | Plus |
Clamp-RB | 2897 | CG1832-RB | 364..2062 | 16..1699 | 8235 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22166555..22166991 | 1699..1263 | 2170 | 99.8 | Minus |
2L | 23513712 | 2L | 22167635..22168066 | 805..374 | 2160 | 100 | Minus |
2L | 23513712 | 2L | 22167303..22167577 | 1077..803 | 1375 | 100 | Minus |
2L | 23513712 | 2L | 22168120..22168320 | 373..173 | 1005 | 100 | Minus |
2L | 23513712 | 2L | 22167050..22167238 | 1266..1078 | 945 | 100 | Minus |
2L | 23513712 | 2L | 22168379..22168536 | 173..16 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:02:17 has no hits.
BO01202.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:26 Download gff for
BO01202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 1..1686 | 17..1700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:22 Download gff for
BO01202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 382..2065 | 16..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:45 Download gff for
BO01202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 365..2047 | 17..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:26 Download gff for
BO01202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1832-RA | 382..2065 | 16..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:28 Download gff for
BO01202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Clamp-RA | 365..2047 | 17..1701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:28 Download gff for
BO01202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22168380..22168535 | 17..172 | 100 | | Minus |
2L | 22167637..22168066 | 374..803 | 100 | <- | Minus |
2L | 22166553..22166987 | 1267..1701 | 99 | <- | Minus |
2L | 22167050..22167238 | 1078..1266 | 100 | <- | Minus |
2L | 22167303..22167576 | 804..1077 | 100 | <- | Minus |
2L | 22168120..22168320 | 173..373 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:45 Download gff for
BO01202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22166553..22166987 | 1267..1701 | 99 | <- | Minus |
arm_2L | 22167050..22167238 | 1078..1266 | 100 | <- | Minus |
arm_2L | 22167303..22167576 | 804..1077 | 100 | <- | Minus |
arm_2L | 22167637..22168066 | 374..803 | 100 | <- | Minus |
arm_2L | 22168120..22168320 | 173..373 | 100 | <- | Minus |
arm_2L | 22168380..22168535 | 17..172 | 100 | | Minus |
BO01202.pep Sequence
Translation from 16 to 1717
> BO01202.pep
MEDLTKNIIFTNAINGQPATIQYQTADGTILKQPKIEGQKTEQQPTFYYT
TNGNGGTVNLAQLATTDDNKTCYIAQPVGGYNYALVNGMPLNQGAALGIA
TVDAQGRIQIVNQNKPIAANTISNISFKCDVCSDMFPHLALLNAHKRMHT
DGEQQQQQQHNAQAGGDSIAVVSAQGLVQAQNIIGNGQMGQIQIVSSDTL
EPVQQSVMQQQQHESKASKCINCGSSMLQQSKRKGPKQVRCESCMQAEQT
AQQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREAS
SGSGHHPVKKRNSQQMTKCQKCNGSGVVLVGQHSHASHSGVGGSVKQSVT
VKTENPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKA
VYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCD
KGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPY
KCEICSAAFADRFALKRHRGIHQKYGQTAPRQTSSDGMIVHKQEIPDMED
EAQQEVIIGGLASFLDH
BO01202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Clamp-PA | 561 | CG1832-PA | 1..561 | 1..561 | 2982 | 100 | Plus |
Clamp-PB | 566 | CG1832-PB | 1..566 | 1..561 | 2966 | 99.1 | Plus |
erm-PB | 603 | CG31670-PB | 150..474 | 205..523 | 424 | 30.5 | Plus |
erm-PA | 611 | CG31670-PA | 158..482 | 205..523 | 424 | 30.5 | Plus |
erm-PC | 654 | CG31670-PC | 158..482 | 205..523 | 424 | 30.5 | Plus |
erm-PB | 603 | CG31670-PB | 303..391 | 439..525 | 192 | 40.4 | Plus |
erm-PA | 611 | CG31670-PA | 311..399 | 439..525 | 192 | 40.4 | Plus |