Clone BO01202 Report

Search the DGRC for BO01202

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG1832-RA
Protein status:BO01202.pep: Imported from assembly
Sequenced Size:1717

Clone Sequence Records

BO01202.3prime Sequence

726 bp (725 high quality bases) assembled on 2005-11-30

> BO01202.3prime
ATGGTCTAGAAAGCTTGCTAACCCACCGATAATCACTTCCTGTTGGGCCT
CATCCTCCATGTCAGGAATCTCCTGCTTATGCACTATCATCCCATCGCTG
CTGGTCTGGCGAGGAGCAGTTTGGCCGTACTTTTGGTGTATGCCGCGGTG
ACGCTTGAGTGCAAAACGATCAGCGAATGCTGCAGAGCAAATCTCGCACT
TGTAGGGTTTTTCTCCGGAGTGCACCTTTGCGTGGTTCTTAAGGTGCGCC
GCCTGAGAAAAGGCCGATCCACAAATTTCACACTTGTATGGCTTTTCGCC
CGTGTGAATGCGCCTATGATTCCAAAGAGTAGCGTGGCGCGCAAATCCTT
TGTCGCAAACACCGCACACATAGGGCCGCTCGCCACTGTGCGTGCGTTCA
TGGTTCTTGAGGTGTGGTGACTGTGAAAACTGCATGCCGCAGGTTTGGCA
TTTATAGGGTTTCTCGCCTGTATGAATGCGCGCGTGGTTTTTCAAATATA
CGGCTTTAGCAAAGGCCAATCCACAGATGCTGCACTTGTAGTTTTTTTCA
CCGCTGTGCAGCTTTTTATGGGACCACAGACTTGAGTAACGTGAAAACAG
ACCACCACATATATTACAACTGAAGGGTTTGGACGGATTTTCAGTTTTAA
CAGTAACTGATTGCTTTACCGATCCGCCCACCCCGCTGTGTGAAGCATGG
GAGTGCTGCCCCACTAGCACCACGCC

BO01202.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1832-PA 1686 CG1832-RA 976..1683 726..19 3540 100 Minus
CG1832-PB 1701 CG1832-RB 1077..1698 640..19 3110 100 Minus
CG1832-PB 1701 CG1832-RB 976..1061 726..641 430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-RA 2636 CG1832-RA 1340..2047 726..19 3540 100 Minus
Clamp-RB 2897 CG1832-RB 1340..2062 726..19 3380 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22166555..22166991 19..455 2170 99.8 Plus
2L 23513712 2L 22167050..22167238 452..640 945 100 Plus
2L 23513712 2L 22167303..22167388 641..726 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:07:45 has no hits.

BO01202.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:41 Download gff for BO01202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-PA 976..1686 18..726 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:05 Download gff for BO01202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-PA 976..1686 18..726 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:11 Download gff for BO01202.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 1340..2047 19..726 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:28 Download gff for BO01202.3prime
Subject Subject Range Query Range Percent Splice Strand
Clamp-RA 1340..2047 19..726 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:28 Download gff for BO01202.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22166555..22166987 19..451 100 <- Plus
2L 22167050..22167238 452..640 100 <- Plus
2L 22167303..22167388 641..726 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:11 Download gff for BO01202.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22166555..22166987 19..451 100 <- Plus
arm_2L 22167050..22167238 452..640 100 <- Plus
arm_2L 22167303..22167388 641..726 100   Plus

BO01202.5prime Sequence

824 bp (700 high quality bases) assembled on 2005-11-30

> BO01202.5prime
GAAGTTATCAGTCGACATGGAAGACCTTACCAAAAACATTATCTTCACAA
ATGCCATTAATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGC
ACCATTCTTAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCC
TACCTTCTATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCAC
AGCTGGCCACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTG
GGCGGATACAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGC
AGCTCTTGGCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCA
ATCAAAATAAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTAAG
TGTGACGTATGTTCAGATATGTTCCCTCATTTGGCACTTCTTAATGCTCA
TAAGCGGATGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACG
CCCAAGCGGGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTG
CAGGCACAGAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGT
GTCTTCTGACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGC
AACATGAGTCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTG
CAGCAGTCCAAACGCAAAGGTCCAAAAGCAGGTGCGCTGCGAGTCCTGCA
TGCAGGCTGAACAAACAGCGCAACAACAACAGCAGCTCTTCGTCCCCCAA
GAAGGTCAATTGGGCGCATCCCCG

BO01202.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1832-PA 1686 CG1832-RA 1..710 17..726 3550 100 Plus
CG1832-PB 1701 CG1832-RB 1..710 17..726 3550 100 Plus
CG1832-PA 1686 CG1832-RA 708..792 725..809 375 97.6 Plus
CG1832-PB 1701 CG1832-RB 708..792 725..809 375 97.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-RB 2897 CG1832-RB 364..1168 16..822 3940 99.4 Plus
Clamp-RA 2636 CG1832-RA 364..1168 16..822 3940 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22167635..22168066 806..374 2085 99.3 Minus
2L 23513712 2L 22168120..22168320 373..173 1005 100 Minus
2L 23513712 2L 22168379..22168536 173..16 790 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:36:17 has no hits.

BO01202.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:42 Download gff for BO01202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-PA 1..805 17..824 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:06 Download gff for BO01202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-PB 1..805 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:25 Download gff for BO01202.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 364..1169 16..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:56 Download gff for BO01202.5prime
Subject Subject Range Query Range Percent Splice Strand
Clamp-RA 364..1169 16..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:56 Download gff for BO01202.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22167630..22168066 374..812 98 <- Minus
2L 22168120..22168320 173..373 100 <- Minus
2L 22168380..22168536 16..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:25 Download gff for BO01202.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22167630..22168066 374..812 98 <- Minus
arm_2L 22168120..22168320 173..373 100 <- Minus
arm_2L 22168380..22168536 16..172 100   Minus

BO01202.complete Sequence

1717 bp (1717 high quality bases) assembled on 2008-08-14

GenBank Submission: FJ629448

> BO01202.complete
GAAGTTATCAGTCGACATGGAAGACCTTACCAAAAACATTATCTTCACAA
ATGCCATTAATGGGCAACCGGCCACAATTCAATACCAGACGGCGGATGGC
ACCATTCTTAAACAGCCCAAAATAGAGGGCCAAAAAACGGAGCAGCAGCC
TACCTTCTATTACACGACAAATGGCAATGGCGGTACCGTCAATCTCGCAC
AGCTGGCCACCACAGACGACAATAAGACGTGTTATATAGCCCAGCCCGTG
GGCGGATACAATTACGCCCTGGTCAACGGAATGCCTCTCAATCAGGGTGC
AGCTCTTGGCATCGCCACGGTAGACGCACAAGGCCGCATCCAGATTGTCA
ATCAAAATAAGCCAATTGCAGCTAACACCATATCCAACATAAGCTTTAAG
TGTGACGTATGTTCAGATATGTTCCCTCATTTGGCACTTCTTAATGCTCA
TAAGCGGATGCATACAGACGGGGAACAGCAGCAACAACAGCAACATAACG
CCCAAGCGGGCGGCGATTCTATTGCCGTGGTCAGCGCGCAGGGGCTTGTG
CAGGCACAGAACATTATTGGAAATGGTCAGATGGGCCAGATACAGATTGT
GTCTTCTGACACGCTGGAGCCGGTTCAGCAATCTGTAATGCAGCAGCAGC
AACATGAGTCAAAGGCAAGCAAGTGCATAAATTGTGGAAGCTCTATGCTG
CAGCAGTCCAAACGCAAAGGTCCAAAGCAGGTGCGCTGCGAGTCCTGCAT
GCAGGCTGAACAAACAGCGCAACAACAACAGCAGCTCTTCGTCGCCCAAG
ACGGTCAAATGGCGCATCCCGTGCAAATCATATCAACGACTCCTCAGGCC
CAAGCACAACTTCAGCAAATTGTGGCTGCACAGACTGGCGGTACAACGCC
AAAGCGAGAGGCGAGCAGTGGGTCTGGCCATCATCCTGTGAAAAAACGAA
ATTCCCAGCAGATGACCAAATGCCAGAAATGCAATGGCTCCGGCGTGGTG
CTAGTGGGGCAGCACTCCCATGCTTCACACAGCGGGGTGGGCGGATCGGT
AAAGCAATCAGTTACTGTTAAAACTGAAAATCCGTCCAAACCCTTCAGTT
GTAATATATGTGGTGGTCTGTTTTCACGTTACTCAAGTCTGTGGTCCCAT
AAAAAGCTGCACAGCGGTGAAAAAAACTACAAGTGCAGCATCTGTGGATT
GGCCTTTGCTAAAGCCGTATATTTGAAAAACCACGCGCGCATTCATACAG
GCGAGAAACCCTATAAATGCCAAACCTGCGGCATGCAGTTTTCACAGTCA
CCACACCTCAAGAACCATGAACGCACGCACAGTGGCGAGCGGCCCTATGT
GTGCGGTGTTTGCGACAAAGGATTTGCGCGCCACGCTACTCTTTGGAATC
ATAGGCGCATTCACACGGGCGAAAAGCCATACAAGTGTGAAATTTGTGGA
TCGGCCTTTTCTCAGGCGGCGCACCTTAAGAACCACGCAAAGGTGCACTC
CGGAGAAAAACCCTACAAGTGCGAGATTTGCTCTGCAGCATTCGCTGATC
GTTTTGCACTCAAGCGTCACCGCGGCATACACCAAAAGTACGGCCAAACT
GCTCCTCGCCAGACCAGCAGCGATGGGATGATAGTGCATAAGCAGGAGAT
TCCTGACATGGAGGATGAGGCCCAACAGGAAGTGATTATCGGTGGGTTAG
CAAGCTTTCTAGACCAT

BO01202.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-RA 1686 CG1832-PA 1..1683 17..1699 8415 100 Plus
Clamp-RB 1701 CG1832-PB 1..1698 17..1699 8230 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-RA 2636 CG1832-RA 364..2047 16..1699 8420 100 Plus
Clamp-RB 2897 CG1832-RB 364..2062 16..1699 8235 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22166555..22166991 1699..1263 2170 99.8 Minus
2L 23513712 2L 22167635..22168066 805..374 2160 100 Minus
2L 23513712 2L 22167303..22167577 1077..803 1375 100 Minus
2L 23513712 2L 22168120..22168320 373..173 1005 100 Minus
2L 23513712 2L 22167050..22167238 1266..1078 945 100 Minus
2L 23513712 2L 22168379..22168536 173..16 790 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:02:17 has no hits.

BO01202.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:26 Download gff for BO01202.complete
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 1..1686 17..1700 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:22 Download gff for BO01202.complete
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 382..2065 16..1699 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:45 Download gff for BO01202.complete
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 365..2047 17..1701 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:26 Download gff for BO01202.complete
Subject Subject Range Query Range Percent Splice Strand
CG1832-RA 382..2065 16..1699 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:28 Download gff for BO01202.complete
Subject Subject Range Query Range Percent Splice Strand
Clamp-RA 365..2047 17..1701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:28 Download gff for BO01202.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22168380..22168535 17..172 100   Minus
2L 22167637..22168066 374..803 100 <- Minus
2L 22166553..22166987 1267..1701 99 <- Minus
2L 22167050..22167238 1078..1266 100 <- Minus
2L 22167303..22167576 804..1077 100 <- Minus
2L 22168120..22168320 173..373 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:45 Download gff for BO01202.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22166553..22166987 1267..1701 99 <- Minus
arm_2L 22167050..22167238 1078..1266 100 <- Minus
arm_2L 22167303..22167576 804..1077 100 <- Minus
arm_2L 22167637..22168066 374..803 100 <- Minus
arm_2L 22168120..22168320 173..373 100 <- Minus
arm_2L 22168380..22168535 17..172 100   Minus

BO01202.pep Sequence

Translation from 16 to 1717

> BO01202.pep
MEDLTKNIIFTNAINGQPATIQYQTADGTILKQPKIEGQKTEQQPTFYYT
TNGNGGTVNLAQLATTDDNKTCYIAQPVGGYNYALVNGMPLNQGAALGIA
TVDAQGRIQIVNQNKPIAANTISNISFKCDVCSDMFPHLALLNAHKRMHT
DGEQQQQQQHNAQAGGDSIAVVSAQGLVQAQNIIGNGQMGQIQIVSSDTL
EPVQQSVMQQQQHESKASKCINCGSSMLQQSKRKGPKQVRCESCMQAEQT
AQQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREAS
SGSGHHPVKKRNSQQMTKCQKCNGSGVVLVGQHSHASHSGVGGSVKQSVT
VKTENPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKA
VYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCD
KGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPY
KCEICSAAFADRFALKRHRGIHQKYGQTAPRQTSSDGMIVHKQEIPDMED
EAQQEVIIGGLASFLDH

BO01202.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Clamp-PA 561 CG1832-PA 1..561 1..561 2982 100 Plus
Clamp-PB 566 CG1832-PB 1..566 1..561 2966 99.1 Plus
erm-PB 603 CG31670-PB 150..474 205..523 424 30.5 Plus
erm-PA 611 CG31670-PA 158..482 205..523 424 30.5 Plus
erm-PC 654 CG31670-PC 158..482 205..523 424 30.5 Plus
erm-PB 603 CG31670-PB 303..391 439..525 192 40.4 Plus
erm-PA 611 CG31670-PA 311..399 439..525 192 40.4 Plus