Clone Sequence Records
BO01203.3prime Sequence
848 bp (770 high quality bases) assembled on 2005-11-30
> BO01203.3prime
ATGGTCTAGAAAGCTTGCGAGTGCGGCCGCAGGACCCGGCTGAGCCTGTG
CCTGTGACGGGTTGGTGTGCTGCATCTGCTCCTGGACGCCAGCCTTGGCC
GCCGAGCGCGTGGCTCGCGATCTCTCCCATTCCGCTTTGTGCTTGCGCTT
AGTGTGATGGTACATATTCGACTTGGAGCGGAATTCCGTGGGACAGAAGG
CGCAGGTGTGCAGCTTGACGCCCGTGTGCGTGGCAAAGTGCTCCTCCAAA
TATCGCTTCATCTTGAAGCTTTTGCCGCACACATCGCATGCGTACTTGGG
CTTGCTCAGGCAGCGATGATTCTGGCCAGGAAGCTCACCGCAATTGGGAC
AAATGATCGAAACGGGTGCCGCATGGATGACAGCCTGCAGCGGAGCCGCC
GGTCGTTTATCCGTCTCTGAAGGCGGGTGGTTGCCATAGGGATGCGCCAT
CATTGTCCCAGTTGTCGTTGTCGTCGTTGTTGTGGCACTGCTCGTTCCTA
CGGCCGCCGCTGCAGCCGCCGTTGCCGACATGACAGCAAAGAGTTGTTCC
TGATGTTGCTGTTGCAAAAGGCTCGCACACAGACGCTGCTGCAGGCTATC
CGGTTGTCCTGGCGGATTGCCCGTTAGCGAAGCGGCTGCCACGACAGCAG
CGGCTACCGCATTATAATTGGCCAGTATGAGCTCGTTCTCCTTGAGCCTT
TTCTGCGGCGAATCCTCGTCGCTAACATCGCTGCCCTCCGTGTGCTGGAC
CTTTTTGGGCGAGTGCGTCTTTTCGCGACTGGATCGATTGCGTGAGCCCC
GACTACCGGATGGCGGTGTCTTGGTTATGGTGAGGTTCATGGCCTCGC
BO01203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-PA | 1689 | CG12219-RA | 857..1686 | 848..19 | 4100 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-RA | 2018 | CG12219-RA | 943..1772 | 848..19 | 4120 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6299863..6300277 | 434..848 | 2045 | 99.5 | Plus |
| X | 23542271 | X | 6299300..6299526 | 19..245 | 1135 | 100 | Plus |
| X | 23542271 | X | 6299607..6299798 | 243..434 | 960 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 594..641 | 156..108 | 115 | 78 | Minus |
BO01203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:43 Download gff for
BO01203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-PA | 857..1689 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:07 Download gff for
BO01203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-PA | 857..1689 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:49:30 Download gff for
BO01203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 943..1772 | 19..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:37 Download gff for
BO01203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 943..1772 | 19..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:37 Download gff for
BO01203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6299608..6299797 | 244..433 | 100 | <- | Plus |
| X | 6299863..6300277 | 434..848 | 99 | | Plus |
| X | 6299300..6299524 | 19..243 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:49:30 Download gff for
BO01203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6193333..6193557 | 19..243 | 100 | <- | Plus |
| arm_X | 6193641..6193830 | 244..433 | 100 | <- | Plus |
| arm_X | 6193896..6194310 | 434..848 | 99 | | Plus |
BO01203.5prime Sequence
834 bp (744 high quality bases) assembled on 2005-11-30
> BO01203.5prime
GAAGTTATCAGTCGACATGATCTGTCGCCTGTGTCTGAACGCGCTCGACG
AGCAGAGCGCGGTGCTACTGTTCGACGGCGCCGGCGGAGCCAGTGCGCCC
GCACCGGATGACGAGGACGACGGCAAGGCGATGCCAGAGAGCTACCTGGT
CCAACTGATCTCGATTCACTTGTACCTCTGCCTCTCCCGCGACGACGCCA
TCTCCACCTGCATCTGCACCGAGTGCTGCTCGCAACTGGAGAGCTTCCAC
AACTTCTGGAAGCTGGTGGAGCTAAAGCAGACGACGCTGTGCAGCCAGTT
TTTGGCTATCGATTGTGATGTCAACTGGTCGGAGGATGGCAGCGAAACGC
AGTTGGATGCGCAACCGCAATTGCTACTGGAGCCGGCGGAGGAGCCCAAA
GTGGTGACTCCCACAACGGCGAATAAGTTTCCCTGCATGTTCTGCGAGAA
GTCATTTAAGATGCGCCGCTACCTGGAGGAGCACATAGCCACCCACACCG
GCGACCGACCCATTGCGTGTCCCTACTGCGAAATGGCCTTCCGCTGCCGT
TCGAATATGTACACCCATGTGAAGAGCAAGCACACCACGCAGTGGCTAAA
GGCTCGCGAAGAGCGGGATGCGGCCAAGTCGAATCAGAATCACACGACGC
CGGAGGAGACCGCTCCAGCAGTTTTAGTTCCTGTCCCTGCTCCTGCTCCT
GCTCTTGCTTCCGCTCCTGCATCTTCTGCTTCTCCTGGAAACACAGTAAA
TCCCGCTGCTACTGCTACTCCTGCTTCGTCTGCCACACCCACCACCAATC
TCGCAGCAGCTCCTTTACCATCGCCACCAACTGT
BO01203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-PA | 1689 | CG12219-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-RA | 2018 | CG12219-RA | 87..904 | 17..834 | 4090 | 100 | Plus |
| CG2889-RB | 2098 | CG2889-RB | 435..524 | 191..280 | 180 | 80 | Plus |
| CG2889-RA | 2173 | CG2889-RA | 510..599 | 191..280 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6300316..6300968 | 834..182 | 3265 | 100 | Minus |
| X | 23542271 | X | 6301035..6301199 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:19:11 has no hits.
BO01203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:44 Download gff for
BO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:09 Download gff for
BO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:00:51 Download gff for
BO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..904 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:44:47 Download gff for
BO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..904 | 17..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:44:47 Download gff for
BO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6300316..6300968 | 182..834 | 100 | <- | Minus |
| X | 6301035..6301199 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:00:51 Download gff for
BO01203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6195068..6195232 | 17..181 | 100 | | Minus |
| arm_X | 6194349..6195001 | 182..834 | 100 | <- | Minus |
BO01203.complete Sequence
1720 bp (1720 high quality bases) assembled on 2006-04-26
GenBank Submission: FJ629449
> BO01203.complete
GAAGTTATCAGTCGACATGATCTGTCGCCTGTGTCTGAACGCGCTCGACG
AGCAGAGCGCGGTGCTACTGTTCGACGGCGCCGGCGGAGCCAGTGCGCCC
GCACCGGATGACGAGGACGACGGCAAGGCGATGCCAGAGAGCTACCTGGT
CCAACTGATCTCGATTCACTTGTACCTCTGCCTCTCCCGCGACGACGCCA
TCTCCACCTGCATCTGCACCGAGTGCTGCTCGCAACTGGAGAGCTTCCAC
AACTTCTGGAAGCTGGTGGAGCTAAAGCAGACGACGCTGTGCAGCCAGTT
TTTGGCTATCGATTGTGATGTCAACTGGTCGGAGGATGGCAGCGAAACGC
AGTTGGATGCGCAACCGCAATTGCTACTGGAGCCGGCGGAGGAGCCCAAA
GTGGTGACTCCCACAACGGCGAATAAGTTTCCCTGCATGTTCTGCGAGAA
GTCATTTAAGATGCGCCGCTACCTGGAGGAGCACATAGCCACCCACACCG
GCGACCGACCCATTGCGTGTCCCTACTGCGAAATGGCCTTCCGCTGCCGT
TCGAATATGTACACCCATGTGAAGAGCAAGCACACCACGCAGTGGCTAAA
GGCTCGCGAAGAGCGGGATGCGGCCAAGTCGAATCAGAATCACACGACGC
CGGAGGAGACCGCTCCAGCAGTTTTAGTTCCTGTCCCTGCTCCTGCTCCT
GCTCTTGCTTCCGCTCCTGCATCTTCTGCTTCTCCTGGAAACACAGTAAA
TCCCGCTGCTACTGCTACTCCTGCTTCGTCTGCCACACCCACCACCAATC
TCGCAGCAGCTCCTTTACCATCGCCACCAACTGTCCAACAGCTGCCGCTG
TCGGTAATCAAGAGTCAACCCAGCGAGGCCATGAACCTCACCATAACCAA
GACACCGCCATCCGGTAGTCGGGGCTCACGCAATCGATCCAGTCGCCGAA
AGACGCACTCGCCCAAAAAGGTCCAGCACACGGAGGGCAGCGATGTTAGC
GACGAGGATTCGCCGCAGAAAAGGCTCAAGGAGAACGAGCTCATACTGGC
CAATTATAATGCGGTAGCCGCTGCTGTCGTGGCAGCCGCTTCGCTAACGG
GCAATCCGCCAGGACAACCGGATAGCCTGCAGCAGCGTCTGTGTGCGAGC
CTTTTGCAACAGCAACATCAGGAACAACTCTTTGCTGTCATGTCGGCAAC
GGCGGCTGCAGCGGCGGCCGTAGGAACGAGCAGTGCCACAACAACGACGA
CAACGACAACTGGGACAATGATGGCGCATCCCTATGGCAACCACCCGCCT
TCAGAGACGGATAAACGACCGGCGGCTCCGCTGCAGGCTGTCATCCATGC
GGCACCCGTTTCGATCATTTGTCCCAATTGCGGTGAGCTTCCTGGCCAGA
ATCATCGCTGCCTGAGCAAGCCCAAGTACGCATGCGATGTGTGCGGCAAA
AGCTTCAAGATGAAGCGATATTTGGAGGAGCACTTTGCCACGCACACGGG
CGTCAAGCTGCACACCTGCGCCTTCTGTCCCACGGAATTCCGCTCCAAGT
CGAATATGTACCATCACACTAAGCGCAAGCACAAAGCGGAATGGGAGAGA
TCGCGAGCCACGCGCTCGGCGGCCAAGGCTGGCGTCCAGGAGCAGATGCA
GCACACCAACCCGTCACAGGCACAGGCTCAGCCGGGTCCTGCGGCCGCAC
TCGCAAGCTTTCTAGACCAT
BO01203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-RA | 1689 | CG12219-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
| CG2889-RB | 1746 | CG2889-PB | 133..222 | 191..280 | 180 | 80 | Plus |
| CG2889-RA | 1746 | CG2889-PA | 133..222 | 191..280 | 180 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-RA | 2018 | CG12219-RA | 87..1772 | 17..1702 | 8430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6299863..6300968 | 1287..182 | 5530 | 100 | Minus |
| X | 23542271 | X | 6299300..6299526 | 1702..1476 | 1135 | 100 | Minus |
| X | 23542271 | X | 6299607..6299798 | 1478..1287 | 960 | 100 | Minus |
| X | 23542271 | X | 6301035..6301199 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:59 has no hits.
BO01203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:20 Download gff for
BO01203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 1..1689 | 17..1703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:40 Download gff for
BO01203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 72..1757 | 17..1702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:07 Download gff for
BO01203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..1772 | 17..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:21 Download gff for
BO01203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 72..1757 | 17..1702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:14 Download gff for
BO01203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..1772 | 17..1704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:14 Download gff for
BO01203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6299298..6299524 | 1478..1704 | 99 | <- | Minus |
| X | 6299608..6299797 | 1288..1477 | 100 | <- | Minus |
| X | 6299863..6300968 | 182..1287 | 100 | <- | Minus |
| X | 6301035..6301199 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:07 Download gff for
BO01203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6193331..6193557 | 1478..1704 | 99 | <- | Minus |
| arm_X | 6193641..6193830 | 1288..1477 | 100 | <- | Minus |
| arm_X | 6193896..6195001 | 182..1287 | 100 | <- | Minus |
| arm_X | 6195068..6195232 | 17..181 | 100 | | Minus |
BO01203.pep Sequence
Translation from 16 to 1720
> BO01203.pep
MICRLCLNALDEQSAVLLFDGAGGASAPAPDDEDDGKAMPESYLVQLISI
HLYLCLSRDDAISTCICTECCSQLESFHNFWKLVELKQTTLCSQFLAIDC
DVNWSEDGSETQLDAQPQLLLEPAEEPKVVTPTTANKFPCMFCEKSFKMR
RYLEEHIATHTGDRPIACPYCEMAFRCRSNMYTHVKSKHTTQWLKAREER
DAAKSNQNHTTPEETAPAVLVPVPAPAPALASAPASSASPGNTVNPAATA
TPASSATPTTNLAAAPLPSPPTVQQLPLSVIKSQPSEAMNLTITKTPPSG
SRGSRNRSSRRKTHSPKKVQHTEGSDVSDEDSPQKRLKENELILANYNAV
AAAVVAAASLTGNPPGQPDSLQQRLCASLLQQQHQEQLFAVMSATAAAAA
AVGTSSATTTTTTTTGTMMAHPYGNHPPSETDKRPAAPLQAVIHAAPVSI
ICPNCGELPGQNHRCLSKPKYACDVCGKSFKMKRYLEEHFATHTGVKLHT
CAFCPTEFRSKSNMYHHTKRKHKAEWERSRATRSAAKAGVQEQMQHTNPS
QAQAQPGPAAALASFLDH
BO01203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-PA | 562 | CG12219-PA | 1..562 | 1..562 | 2970 | 100 | Plus |
| CG2889-PB | 581 | CG2889-PB | 480..571 | 451..534 | 206 | 42.4 | Plus |
| CG2889-PA | 581 | CG2889-PA | 480..571 | 451..534 | 206 | 42.4 | Plus |
| CG2889-PB | 581 | CG2889-PB | 1..87 | 1..101 | 204 | 45.5 | Plus |
| CG2889-PA | 581 | CG2889-PA | 1..87 | 1..101 | 204 | 45.5 | Plus |
| CG11696-PA | 664 | CG11696-PA | 531..622 | 467..561 | 193 | 37.9 | Plus |
| grau-PA | 570 | CG33133-PA | 457..550 | 452..545 | 191 | 39.4 | Plus |
| CG2889-PB | 581 | CG2889-PB | 510..570 | 140..200 | 187 | 50.8 | Plus |
| CG2889-PA | 581 | CG2889-PA | 510..570 | 140..200 | 187 | 50.8 | Plus |
