Clone Sequence Records
BO01209.3prime Sequence
886 bp (730 high quality bases) assembled on 2005-11-30
> BO01209.3prime
ATGGTCTAGAAAGCTTGCATCGTGGGCACTCTGTGCATCCTCTCTGCCGG
TCATCTTCTTAAGCTGGTTGTTTCCATGCACCGTCAGGCTGTGGTTTGTG
AACTCGAGTATGCTCCTAAACGACTGCTTGCAGATGTGGCAGGGCACAGT
CTTTGTGGGAGTGCGGTAGACGCCGGCATGCGCCACATTCTTGGGAATTT
TTTTCACGCTCGGTGGAGCCATGGACTGGGTTCCTTGTGAGGGAGCTAAT
TTGGGAATAGTACTAATGCGTTGCTGTGGCTTCTGGGGCATCGTCATGGG
ATGGTTAATGCCACTGGTGCCACCGATCTTTGGCAGCTGGGCTTTCTTCT
CGTGGTTCAGCTCGGTGAACTCCAGCTTGCGCTTCTCGGACGGCGGTATC
TTGTCGCAGTTCTGCATTAAATGGATGTGCAAGGCACGTTCCAGTGCGAA
ATTCTTATCGCAAAACTTGCAGCGATTCTTCGAGACTCCCGCTGCAACCG
GATTGCTGTTCAGACGCTTAAGGGTATTGGCTCCGTTGTCAACCGGATCG
TGCATTCGCATATGCACGTCAAGAAGTGACTTCACCCGAAAGGTTGTGCT
GCAATTCTTGCAGCTAAAAACTTTCTCCGGAATGCTTTTTGTCGATGTCT
TAGCCGGCTTTGAGGCGATCTTCTCAGGCGAACGCACGCTGGTCACAGCG
AGCGACTTTCTTATGCTGCTCTTTGTTAGCTTGGAGACGGGCAAGCAGCT
GCGACGGCTTAGTGACACACCGCCACCGACACTCCGCTTGCGAGCTGGGC
TGTTGAGCGTTGTCTTGACCACCACCGACATGCGCTGCTTGAAGGAGTAC
GTTCGCGTCTCTGCGGTGGTGGTGGGCAGATAGGAG
BO01209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PB | 1716 | CG8478-RB | 846..1713 | 886..19 | 4340 | 100 | Minus |
| CG8478-PA | 1659 | CG8478-RA | 789..1656 | 886..19 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RD | 2177 | CG8478-RD | 1010..1877 | 886..19 | 4340 | 100 | Minus |
| CG8478-RC | 2165 | CG8478-RC | 998..1865 | 886..19 | 4340 | 100 | Minus |
| CG8478-RE | 2162 | CG8478-RE | 995..1862 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764907..9765547 | 886..246 | 3205 | 100 | Minus |
| 3R | 32079331 | 3R | 9765607..9765835 | 247..19 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:05:55 has no hits.
BO01209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:54 Download gff for
BO01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PB | 846..1716 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:25 Download gff for
BO01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PA | 789..1659 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:52 Download gff for
BO01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RE | 995..1868 | 11..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:00 Download gff for
BO01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RE | 995..1868 | 11..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:00 Download gff for
BO01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9764907..9765547 | 246..886 | 100 | -> | Minus |
| 3R | 9765609..9765841 | 11..245 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:52 Download gff for
BO01209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5590629..5591269 | 246..886 | 100 | -> | Minus |
| arm_3R | 5591331..5591563 | 11..245 | 98 | | Minus |
BO01209.5prime Sequence
800 bp (798 high quality bases) assembled on 2005-11-30
> BO01209.5prime
GAAGTTATCAGTCGACATGGACGATTCGCGCAGAACTATGGCCGGCAAGA
TCGATTCCCGTAGCTCATCGATAATGACAAACGATGAGAGCGTCTCCATG
TATTTATCCTTTGACGCGGAGGACACCCTGTCCAATGCCAAGTGGCAGTC
GGCCCTGGTCACCCAGAACAGCCAGTTCCTGGAGGTGCACAACAGCAAGG
TGGAGGTAAACACCGATGATAAGGACCTAAGGCGCACTATCCTAAAGGAT
CTGCATCAGTTGACCATTGGGGAACCGGACCAGAATTCTCCTCTGCGCCC
ATTTGACAAAAGTATTCTTAACCGGCACAACGCCTTGTGCTCCACTCCCT
CCAAGGGCAATATTTCGACCGAAACGCAGACACCACAGATCATGGAGAGC
ATAGATCTGACCCAAATTGACGACAAGGAAAACACACAACCGGAGGGGTG
TGGCGGCGATAACTCGACCTTGTCCAGTTCAGTGGACGTGACCGCCAATA
CGGTTAAGGCCAATACCCTAAAAACAGGGGATGCTACCATGGACAATGTA
TCCTTGCAGGAGGCTGCCAAGACCCCAGCTCCCAGCCAAGTCTATCCCTT
GAGTGCGAACGTAGTTTTAGAGAATATAACTGAAGTATCCAACGAAGGAG
TATCCATGCTGGTCTCGCCAGCCGGAGCCGAAAAGGAGGTCGCCCATGTC
AACGAGGTAGTGAACGAAGTCTCTGAGCTAATTGCCAAAGCTCTAAAGAT
CTCCGCTGATTCTGTGAAGCCAGCGACCTCCAAATTAAAAGTGGAGGCGG
BO01209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PB | 1716 | CG8478-RB | 1..784 | 17..800 | 3920 | 100 | Plus |
| CG8478-PA | 1659 | CG8478-RA | 1..727 | 74..800 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 2162 | CG8478-RE | 149..933 | 16..800 | 3925 | 100 | Plus |
| CG8478-RB | 2266 | CG8478-RB | 253..1037 | 16..800 | 3925 | 100 | Plus |
| CG8478-RC | 2165 | CG8478-RC | 149..936 | 16..800 | 3885 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764039..9764626 | 48..635 | 2940 | 100 | Plus |
| 3R | 32079331 | 3R | 9764679..9764845 | 634..800 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:08:52 has no hits.
BO01209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:25:54 Download gff for
BO01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PB | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:26 Download gff for
BO01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-PB | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:19 Download gff for
BO01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1037 | 16..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:51 Download gff for
BO01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1037 | 16..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:51 Download gff for
BO01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9763902..9763935 | 16..49 | 100 | -> | Plus |
| 3R | 9764041..9764626 | 50..635 | 100 | -> | Plus |
| 3R | 9764681..9764845 | 636..800 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:19 Download gff for
BO01209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5589624..5589657 | 16..49 | 100 | -> | Plus |
| arm_3R | 5589763..5590348 | 50..635 | 100 | -> | Plus |
| arm_3R | 5590403..5590567 | 636..800 | 100 | | Plus |
BO01209.complete Sequence
1747 bp (1747 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ629451
> BO01209.complete
GAAGTTATCAGTCGACATGGACGATTCGCGCAGAACTATGGCCGGCAAGA
TCGATTCCCGTAGCTCATCGATAATGACAAACGATGAGAGCGTCTCCATG
TATTTATCCTTTGACGCGGAGGACACCCTGTCCAATGCCAAGTGGCAGTC
GGCCCTGGTCACCCAGAACAGCCAGTTCCTGGAGGTGCACAACAGCAAGG
TGGAGGTAAACACCGATGATAAGGACCTAAGGCGCACTATCCTAAAGGAT
CTGCATCAGTTGACCATTGGGGAACCGGACCAGAATTCTCCTCTGCGCCC
ATTTGACAAAAGTATTCTTAACCGGCACAACGCCTTGTGCTCCACTCCCT
CCAAGGGCAATATTTCGACCGAAACGCAGACACCACAGATCATGGAGAGC
ATAGATCTGACCCAAATTGACGACAAGGAAAACACACAACCGGAGGGGTG
TGGCGGCGATAACTCGACCTTGTCCAGTTCAGTGGACGTGACCGCCAATA
CGGTTAAGGCCAATACCCTAAAAACAGGGGATGCTACCATGGACAATGTA
TCCTTGCAGGAGGCTGCCAAGACCCCAGCTCCCAGCCAAGTCTATCCCTT
GAGTGCGAACGTAGTTTTAGAGAATATAACTGAAGTATCCAACGAAGGAG
TATCCATGCTGGTCTCGCCAGCCGGAGCCGAAAAGGAGGTCGCCCATGTC
AACGAGGTAGTGAACGAAGTCTCTGAGCTAATTGCCAAAGCTCTAAAGAT
CTCCGCTGATTCTGTGAAGCCAGCGACCTCCAAATTAAAAGTGGAGGCGG
GCAAGAAGAGGCAGTCCATGAGCTCCACTTATTCGGGTGCCGCCCTACCG
CGCCCTCGGCGCTCCTATCTGCCCACCACCACCGCAGAGACGCGAACGTA
CTCCTTCAAGCAGCGCATGTCGGTGGTGGTCAAGACAACGCTCAACAGCC
CAGCTCGCAAGCGGAGTGTCGGTGGCGGTGTGTCACTAAGCCGTCGCAGC
TGCTTGCCCGTCTCCAAGCTAACAAAGAGCAGCATAAGAAAGTCGCTCGC
TGTGACCAGCGTGCGTTCGCCTGAGAAGATCGCCTCAAAGCCGGCTAAGA
CATCGACAAAAAGCATTCCGGAGAAAGTTTTTAGCTGCAAGAATTGCAGC
ACAACCTTTCGGGTGAAGTCACTTCTTGACGTGCATATGCGAATGCACGA
TCCGGTTGACAACGGAGCCAATACCCTTAAGCGTCTGAACAGCAATCCGG
TTGCAGCGGGAGTCTCGAAGAATCGCTGCAAGTTTTGCGATAAGAATTTC
GCACTGGAACGTGCCTTGCACATCCATTTAATGCAGAACTGCGACAAGAT
ACCGCCGTCCGAGAAGCGCAAGCTGGAGTTCACCGAGCTGAACCACGAGA
AGAAAGCCCAGCTGCCAAAGATCGGTGGCACCAGTGGCATTAACCATCCC
ATGACGATGCCCCAGAAGCCACAGCAACGCATTAGTACTATTCCCAAATT
AGCTCCCTCACAAGGAACCCAGTCCATGGCTCCACCGAGCGTGAAAAAAA
TTCCCAAGAATGTGGCGCATGCCGGCGTCTACCGCACTCCCACAAAGACT
GTGCCCTGCCACATCTGCAAGCAGTCGTTTAGGAGCATACTCGAGTTCAC
AAACCACAGCCTGACGGTGCATGGAAACAACCAGCTTAAGAAGATGACCG
GCAGAGAGGATGCACAGAGTGCCCACGATGCAAGCTTTCTAGACCAT
BO01209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 1716 | CG8478-PE | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| CG8478-RB | 1716 | CG8478-PB | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| CG8478-RC | 1719 | CG8478-PC | 1..1716 | 17..1729 | 8500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 2162 | CG8478-RE | 149..1862 | 16..1729 | 8570 | 100 | Plus |
| CG8478-RB | 2266 | CG8478-RB | 253..1966 | 16..1729 | 8570 | 100 | Plus |
| CG8478-RC | 2165 | CG8478-RC | 149..1865 | 16..1729 | 8505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764679..9765547 | 634..1502 | 4345 | 100 | Plus |
| 3R | 32079331 | 3R | 9764039..9764626 | 48..635 | 2940 | 100 | Plus |
| 3R | 32079331 | 3R | 9765607..9765835 | 1501..1729 | 1145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:11:24 has no hits.
BO01209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:43 Download gff for
BO01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 1..1716 | 17..1733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:38 Download gff for
BO01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1972 | 16..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:25 Download gff for
BO01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 254..1966 | 17..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:43 Download gff for
BO01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1972 | 16..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:49 Download gff for
BO01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 254..1966 | 17..1731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:49 Download gff for
BO01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9763903..9763935 | 17..49 | 100 | -> | Plus |
| 3R | 9764041..9764626 | 50..635 | 100 | -> | Plus |
| 3R | 9764681..9765547 | 636..1502 | 100 | -> | Plus |
| 3R | 9765609..9765835 | 1503..1731 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:25 Download gff for
BO01209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5589625..5589657 | 17..49 | 100 | -> | Plus |
| arm_3R | 5589763..5590348 | 50..635 | 100 | -> | Plus |
| arm_3R | 5590403..5591269 | 636..1502 | 100 | -> | Plus |
| arm_3R | 5591331..5591557 | 1503..1731 | 99 | | Plus |
BO01209.pep Sequence
Translation from 16 to 1747
> BO01209.pep
MDDSRRTMAGKIDSRSSSIMTNDESVSMYLSFDAEDTLSNAKWQSALVTQ
NSQFLEVHNSKVEVNTDDKDLRRTILKDLHQLTIGEPDQNSPLRPFDKSI
LNRHNALCSTPSKGNISTETQTPQIMESIDLTQIDDKENTQPEGCGGDNS
TLSSSVDVTANTVKANTLKTGDATMDNVSLQEAAKTPAPSQVYPLSANVV
LENITEVSNEGVSMLVSPAGAEKEVAHVNEVVNEVSELIAKALKISADSV
KPATSKLKVEAGKKRQSMSSTYSGAALPRPRRSYLPTTTAETRTYSFKQR
MSVVVKTTLNSPARKRSVGGGVSLSRRSCLPVSKLTKSSIRKSLAVTSVR
SPEKIASKPAKTSTKSIPEKVFSCKNCSTTFRVKSLLDVHMRMHDPVDNG
ANTLKRLNSNPVAAGVSKNRCKFCDKNFALERALHIHLMQNCDKIPPSEK
RKLEFTELNHEKKAQLPKIGGTSGINHPMTMPQKPQQRISTIPKLAPSQG
TQSMAPPSVKKIPKNVAHAGVYRTPTKTVPCHICKQSFRSILEFTNHSLT
VHGNNQLKKMTGREDAQSAHDASFLDH
BO01209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-PE | 571 | CG8478-PE | 1..571 | 1..571 | 2907 | 100 | Plus |
| CG8478-PB | 571 | CG8478-PB | 1..571 | 1..571 | 2907 | 100 | Plus |
| CG8478-PC | 572 | CG8478-PC | 1..572 | 1..571 | 2895 | 99.8 | Plus |
| CG8478-PD | 576 | CG8478-PD | 1..576 | 1..571 | 2891 | 99.1 | Plus |
| CG6470-PB | 337 | CG6470-PB | 10..293 | 204..467 | 228 | 25.9 | Plus |
