Clone Sequence Records
BO01216.3prime Sequence
817 bp (730 high quality bases) assembled on 2005-11-30
> BO01216.3prime
ATGGTCTAGAAAGCTTGCTGAAGTGGAGCACTTCCGCAGTTGTTCCTCCT
CTTTTTGCAGGATGCGTATCTTCATTGTCAGCTCCTCGACTCGAAGTCGA
TGCACCTCCTTCATGTACTTGAGTTCATCCTGCGCCTTGTTGAGTTCAAT
GCGCTTGGCTTCTGTGGCCAGCTGCTGCTCCTTGCAGCGCAGTTCAGCCT
CGCGGATTTTGAAGTAGTTCATTCGCTCTTCGAAGCTGTCCGCAGCGGTA
GCAGACGCATTAGTGGCTCCATTACCCCCTCCTCCGCCCAGGCTGGTGTT
GTTGATACTCACGGAGGAGGCTGTTGATGTGTTGACCGCCACTGAGTTCG
CAGATCCCGATGATGCAGTGGCCACAGGCACTGGAACCGCCGCCGGCACT
GTCGTAGCAGCCGTAACTGTGGGCAGGGCGCTGAAGGTAAACGTGGGCGT
GGCGGCGGTTAGTTGCATCTTAACCGCCGCCGCCGCTGCTGCCTGTTGCT
GTTGGACGGCAACGGCCGCCTGTTGTTGCTGCTGCTGCTGGTGATGCACT
TGGACGGCGGCGGCTAGTTGCTGATGTTGAGCGGCAGCAAGTTGCTGCTG
GGCAAGCTGTTGCGCCTGTGCTTGGGCCTGGGCTTGTGCCTGAGCTTGCG
CTTGAGCCTGCGCTTGGGCCTGGGCCTGCGCTTGAGCCTGCTGTTGCTGC
TGAGCCTGGTACTGGGCCAAAGTGATTTGCTGGGGCTTGATCTCACTAAT
GATCTGCTGATTGTAGCCGCCGGCGGTAATTGTGGCCATTGGATGCTGCT
GCGCCTGGGTGGGTATG
BO01216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7803-PA | 1728 | z-RA | 927..1725 | 817..19 | 3920 | 99.6 | Minus |
CG7803-PB | 1728 | z-RB | 927..1725 | 817..19 | 3920 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
z-RC | 2412 | CG7803-RC | 1268..2066 | 817..19 | 3950 | 99.6 | Minus |
z-RB | 2412 | CG7803-RB | 1268..2066 | 817..19 | 3950 | 99.6 | Minus |
z-RA | 2599 | CG7803-RA | 1455..2253 | 817..19 | 3950 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2449406..2450204 | 817..19 | 3950 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-13 13:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6900 | 702..521 | 236 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2518 | 714..521 | 218 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6922 | 762..520 | 215 | 60 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..7059 | 714..409 | 211 | 57.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6679..6839 | 643..482 | 202 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2511 | 697..482 | 200 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2466 | 641..482 | 193 | 64.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7000 | 801..520 | 187 | 59.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6913 | 661..474 | 186 | 60.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 578..351 | 180 | 59.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6890 | 642..476 | 180 | 61.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..6857 | 664..485 | 171 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2442 | 629..488 | 169 | 65.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2491 | 579..400 | 167 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6953 | 547..311 | 158 | 56.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1599 | 630..497 | 153 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2442 | 613..479 | 150 | 63.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1049..1163 | 599..485 | 150 | 65.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1121 | 545..482 | 137 | 74.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1154 | 599..522 | 134 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2385 | 552..476 | 128 | 67.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2651 | 578..520 | 125 | 72.9 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1031 | 553..494 | 124 | 70 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3226..3310 | 602..521 | 120 | 66.7 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7954..7977 | 544..521 | 111 | 95.8 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9398..9421 | 544..521 | 111 | 95.8 | Minus |
BO01216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:01 Download gff for
BO01216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7803-PB | 927..1728 | 16..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:37 Download gff for
BO01216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7803-PB | 927..1728 | 16..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:33:48 Download gff for
BO01216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
z-RA | 1455..2253 | 19..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:08 Download gff for
BO01216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
z-RA | 1455..2253 | 19..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:08 Download gff for
BO01216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2449406..2450204 | 19..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:33:48 Download gff for
BO01216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2343439..2344237 | 19..817 | 99 | | Minus |
BO01216.complete Sequence
1759 bp assembled on 2009-08-24
GenBank Submission: KX796141
> BO01216.complete
GAAGTTATCAGTCGACATGTCGGCGCAGGGTGAAGGGGGCGGTGCTGGCG
GAAGCGGCGGCGGTGGTGCTGGTTCGGATGGAGGCGGCAATGCTGGCCAA
AGCTCCACGGGGAGTGGCACAGTGGCGGTCACCAACGGAGGCAACTCGTC
CGCCAAAAACCAGCTGCCGCTCACCCCGCGCTTCACCGCCGAGGAAAAGG
AGGTCCTGTACACCCTGTTCCATTTGCACGAGGAGGTCATCGATATCAAG
CATCGCAAGAAGCAGCGCAACAAGTACTCCGTCCGAGAAACATGGGACAA
GATCGTCAAGGACTTCAACTCGCACCCGCATGTGAGCGCCATGCGGAATA
TCAAGCAGATCCAGAAATTCTGGCTAAACTCCAGACTCCGCAAACAGTAT
CCGTACAGGGATGGCAGCTCCTCAAATCTCAGCTCTGGTAGCGCCAAAAT
CAGCTCCGTATCCGTGTCCGTTGCGTCGGCGGTGCCACAACAGCAGCAGC
AACAGCATCACCAGCAGCATGACAGCGTTAAGGTGGAACCCGAGTACCAG
ATTAGTCCCGATGCCTCCGAGCACAATCCACAGGCGGACACATTCGACGA
GATCGAGATGGATGCCAACGATGTGAGCGAGATTGACGAGGACCCAATGG
AGCAGCAGCAGCAACAGCAGCAGGAGGCTCAGGCCCAAGCCCAAGCCCAA
GCCCAAGCTCAGGCCCAAGTGCAATCCGCCGCCGCCGAGATGCAGAAGAT
GCAACAGGTGAACGCGGTGGCTGCGGCGGCGGCGGCCAATGCCACCATGA
TCAACACCCACCAGATAAACGTGGACCAGATCAGTGCTGAGAAGCTGACT
CTGAATGATCTGCTGCACTTCAAGACAGCTCGCCCCCGCGAGGAGATCAT
ATTGATTAAGCACCCAGAGGCTACCGCCACCCAGATCCACACCATACCCA
CCCAGGCGCAGCAGCATCCAATGGCCACAATTACCGCCGGCGGCTACAAT
CAGCAGATCATTAGTGAGATCAAGCCCCAGCAAATCACTTTGGCCCAGTA
CCAGGCTCAGCAGCAACAGCAGGCTCAAGCGCAGGCCCAGGCCCAAGCGC
AGGCTCAAGCGCAAGCTCAGGCACAAGCCCAGGCCCAAGCACAGGCGCAA
CAGCTTGCCCAGCAGCAACTTGCTGCCGCTCAACATCAGCAACTAGCCGC
CGCCGTCCAAGTGCATCACCAGCAGCAGCAGCAACAACAGGCGGCCGTTG
CCGTCCAACAGCAACAGGCAGCAGCGGCGGCGGCGGTTAAGATGCAACTA
ACCGCCGCCACGCCCACGTTTACCTTCAGCGCCCTGCCCACAGTTACGGC
TGCTACGACAGTGCCGGCGGCGGTTCCAGTGCCTGTGGCCACTGCATCAT
CGGGATCTGCGAACTCAGTGGCGGTCAACACATCAACAGCCTCCTCCGTG
AGTATCAACAACACCAGCCTGGGCGGAGGAGGGGGTAATGGAGCCACTAA
TGCGTCTGCTACCGCTGCGGACAGCTTCGAAGAGCGAATGAACTACTTCA
AAATCCGCGAGGCTGAACTGCGCTGCAAGGAGCAGCAGCTGGCCACAGAA
GCCAAGCGCATTGAACTCAACAAGGCGCAGGATGAACTCAAGTACATGAA
GGAGGTGCATCGACTTCGAGTCGAGGAGCTGACAATGAAGATACGCATCC
TGCAAAAAGAGGAGGAACAACTGCGGAAGTGCTCCACTTCAGCAAGCTTT
CTAGACCAT
BO01216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
z-RC | 1818 | CG7803-PC | 1..1725 | 17..1741 | 8580 | 99.8 | Plus |
z-RB | 1728 | CG7803-PB | 1..1725 | 17..1741 | 8580 | 99.8 | Plus |
z-RA | 1728 | CG7803-PA | 1..1725 | 17..1741 | 8580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
z-RC | 2412 | CG7803-RC | 342..2066 | 17..1741 | 8580 | 99.8 | Plus |
z-RB | 2412 | CG7803-RB | 342..2066 | 17..1741 | 8580 | 99.8 | Plus |
z-RA | 2599 | CG7803-RA | 529..2253 | 17..1741 | 8580 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2449389..2450204 | 926..1741 | 4035 | 99.6 | Plus |
X | 23542271 | X | 2448784..2449327 | 383..926 | 2720 | 100 | Plus |
X | 23542271 | X | 2448297..2448664 | 17..384 | 1840 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6900 | 1058..1239 | 236 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2518 | 1046..1239 | 218 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6922 | 998..1240 | 215 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..7059 | 1046..1351 | 211 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6679..6839 | 1117..1278 | 202 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2511 | 1063..1278 | 200 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2466 | 1119..1278 | 193 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2999 | 485..1165 | 189 | 52.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7000 | 959..1240 | 187 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6913 | 1099..1286 | 186 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6952 | 1182..1409 | 180 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..6857 | 1096..1275 | 171 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2491 | 1181..1360 | 167 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..7099 | 484..858 | 162 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6953 | 1214..1449 | 157 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2977 | 481..681 | 154 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6791 | 484..526 | 154 | 86.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6812 | 484..526 | 154 | 86.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1599 | 1130..1263 | 153 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2442 | 1147..1281 | 150 | 63.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6870 | 484..549 | 148 | 72.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6825 | 484..519 | 144 | 88.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6862 | 484..523 | 137 | 82.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2258..2338 | 438..519 | 136 | 67.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1154 | 1161..1238 | 134 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1112..1143 | 488..519 | 133 | 90.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2385 | 1208..1284 | 128 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2817..2989 | 485..669 | 128 | 58.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1075..1118 | 484..526 | 127 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2651 | 928..1240 | 126 | 55.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1117..1180 | 484..545 | 125 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1564 | 488..519 | 124 | 87.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 488..519 | 124 | 87.5 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 974..1031 | 1207..1266 | 124 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6884 | 485..526 | 122 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2832 | 484..518 | 121 | 82.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3226..3310 | 1158..1239 | 120 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2627..2966 | 484..834 | 116 | 53.2 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3324 | 488..521 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2431 | 484..513 | 114 | 86.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6908 | 393..526 | 113 | 57.7 | Plus |
BO01216.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:32 Download gff for
BO01216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
z-RB | 328..2052 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:06 Download gff for
BO01216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
z-RA | 529..2253 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:38 Download gff for
BO01216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
z-RA | 529..2253 | 17..1743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:38 Download gff for
BO01216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2448297..2448664 | 17..384 | 100 | -> | Plus |
X | 2448786..2449327 | 385..926 | 100 | -> | Plus |
X | 2449390..2450204 | 927..1743 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:06 Download gff for
BO01216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2342330..2342697 | 17..384 | 100 | -> | Plus |
arm_X | 2342819..2343360 | 385..926 | 100 | -> | Plus |
arm_X | 2343423..2344237 | 927..1743 | 99 | | Plus |
BO01216.pep Sequence
Translation from 16 to 1759
> BO01216.pep
MSAQGEGGGAGGSGGGGAGSDGGGNAGQSSTGSGTVAVTNGGNSSAKNQL
PLTPRFTAEEKEVLYTLFHLHEEVIDIKHRKKQRNKYSVRETWDKIVKDF
NSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSSSNLSSGSAKISSVSV
SVASAVPQQQQQQHHQQHDSVKVEPEYQISPDASEHNPQADTFDEIEMDA
NDVSEIDEDPMEQQQQQQQEAQAQAQAQAQAQAQVQSAAAEMQKMQQVNA
VAAAAAANATMINTHQINVDQISAEKLTLNDLLHFKTARPREEIILIKHP
EATATQIHTIPTQAQQHPMATITAGGYNQQIISEIKPQQITLAQYQAQQQ
QQAQAQAQAQAQAQAQAQAQAQAQAQAQQLAQQQLAAAQHQQLAAAVQVH
HQQQQQQQAAVAVQQQQAAAAAAVKMQLTAATPTFTFSALPTVTAATTVP
AAVPVPVATASSGSANSVAVNTSTASSVSINNTSLGGGGGNGATNASATA
ADSFEERMNYFKIREAELRCKEQQLATEAKRIELNKAQDELKYMKEVHRL
RVEELTMKIRILQKEEEQLRKCSTSASFLDH
BO01216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
z-PC | 605 | CG7803-PC | 1..580 | 1..580 | 2866 | 99.3 | Plus |
z-PB | 575 | CG7803-PB | 1..575 | 1..575 | 2864 | 100 | Plus |
z-PA | 575 | CG7803-PA | 1..575 | 1..575 | 2864 | 100 | Plus |
mbl-PJ | 789 | CG33197-PJ | 451..781 | 127..482 | 209 | 28.1 | Plus |
mbl-PK | 803 | CG33197-PK | 465..795 | 127..482 | 209 | 28.1 | Plus |
mbl-PJ | 789 | CG33197-PJ | 239..689 | 134..544 | 182 | 24.1 | Plus |