Clone BO01216 Report

Search the DGRC for BO01216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:12
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptz-RA
Protein status:BO01216.pep: Imported from assembly
Sequenced Size:1759

Clone Sequence Records

BO01216.3prime Sequence

817 bp (730 high quality bases) assembled on 2005-11-30

> BO01216.3prime
ATGGTCTAGAAAGCTTGCTGAAGTGGAGCACTTCCGCAGTTGTTCCTCCT
CTTTTTGCAGGATGCGTATCTTCATTGTCAGCTCCTCGACTCGAAGTCGA
TGCACCTCCTTCATGTACTTGAGTTCATCCTGCGCCTTGTTGAGTTCAAT
GCGCTTGGCTTCTGTGGCCAGCTGCTGCTCCTTGCAGCGCAGTTCAGCCT
CGCGGATTTTGAAGTAGTTCATTCGCTCTTCGAAGCTGTCCGCAGCGGTA
GCAGACGCATTAGTGGCTCCATTACCCCCTCCTCCGCCCAGGCTGGTGTT
GTTGATACTCACGGAGGAGGCTGTTGATGTGTTGACCGCCACTGAGTTCG
CAGATCCCGATGATGCAGTGGCCACAGGCACTGGAACCGCCGCCGGCACT
GTCGTAGCAGCCGTAACTGTGGGCAGGGCGCTGAAGGTAAACGTGGGCGT
GGCGGCGGTTAGTTGCATCTTAACCGCCGCCGCCGCTGCTGCCTGTTGCT
GTTGGACGGCAACGGCCGCCTGTTGTTGCTGCTGCTGCTGGTGATGCACT
TGGACGGCGGCGGCTAGTTGCTGATGTTGAGCGGCAGCAAGTTGCTGCTG
GGCAAGCTGTTGCGCCTGTGCTTGGGCCTGGGCTTGTGCCTGAGCTTGCG
CTTGAGCCTGCGCTTGGGCCTGGGCCTGCGCTTGAGCCTGCTGTTGCTGC
TGAGCCTGGTACTGGGCCAAAGTGATTTGCTGGGGCTTGATCTCACTAAT
GATCTGCTGATTGTAGCCGCCGGCGGTAATTGTGGCCATTGGATGCTGCT
GCGCCTGGGTGGGTATG

BO01216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7803-PA 1728 z-RA 927..1725 817..19 3920 99.6 Minus
CG7803-PB 1728 z-RB 927..1725 817..19 3920 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
z-RC 2412 CG7803-RC 1268..2066 817..19 3950 99.6 Minus
z-RB 2412 CG7803-RB 1268..2066 817..19 3950 99.6 Minus
z-RA 2599 CG7803-RA 1455..2253 817..19 3950 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2449406..2450204 817..19 3950 99.6 Minus
Blast to na_te.dros performed 2015-02-13 13:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6900 702..521 236 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2518 714..521 218 61.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6677..6922 762..520 215 60 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..7059 714..409 211 57.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6679..6839 643..482 202 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2511 697..482 200 61.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2466 641..482 193 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..7000 801..520 187 59.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6913 661..474 186 60.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6952 578..351 180 59.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6890 642..476 180 61.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6688..6857 664..485 171 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2442 629..488 169 65.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2491 579..400 167 61.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6953 547..311 158 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1470..1599 630..497 153 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2442 613..479 150 63.8 Minus
roo 9092 roo DM_ROO 9092bp 1049..1163 599..485 150 65.5 Minus
roo 9092 roo DM_ROO 9092bp 1059..1121 545..482 137 74.2 Minus
roo 9092 roo DM_ROO 9092bp 1071..1154 599..522 134 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2385 552..476 128 67.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2651 578..520 125 72.9 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 974..1031 553..494 124 70 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3226..3310 602..521 120 66.7 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7954..7977 544..521 111 95.8 Minus
TART-C 11124 TART-C TARTC 11124bp 9398..9421 544..521 111 95.8 Minus

BO01216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:01 Download gff for BO01216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7803-PB 927..1728 16..817 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:37 Download gff for BO01216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7803-PB 927..1728 16..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:33:48 Download gff for BO01216.3prime
Subject Subject Range Query Range Percent Splice Strand
z-RA 1455..2253 19..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:08 Download gff for BO01216.3prime
Subject Subject Range Query Range Percent Splice Strand
z-RA 1455..2253 19..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:08 Download gff for BO01216.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2449406..2450204 19..817 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:33:48 Download gff for BO01216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2343439..2344237 19..817 99   Minus

BO01216.complete Sequence

1759 bp assembled on 2009-08-24

GenBank Submission: KX796141

> BO01216.complete
GAAGTTATCAGTCGACATGTCGGCGCAGGGTGAAGGGGGCGGTGCTGGCG
GAAGCGGCGGCGGTGGTGCTGGTTCGGATGGAGGCGGCAATGCTGGCCAA
AGCTCCACGGGGAGTGGCACAGTGGCGGTCACCAACGGAGGCAACTCGTC
CGCCAAAAACCAGCTGCCGCTCACCCCGCGCTTCACCGCCGAGGAAAAGG
AGGTCCTGTACACCCTGTTCCATTTGCACGAGGAGGTCATCGATATCAAG
CATCGCAAGAAGCAGCGCAACAAGTACTCCGTCCGAGAAACATGGGACAA
GATCGTCAAGGACTTCAACTCGCACCCGCATGTGAGCGCCATGCGGAATA
TCAAGCAGATCCAGAAATTCTGGCTAAACTCCAGACTCCGCAAACAGTAT
CCGTACAGGGATGGCAGCTCCTCAAATCTCAGCTCTGGTAGCGCCAAAAT
CAGCTCCGTATCCGTGTCCGTTGCGTCGGCGGTGCCACAACAGCAGCAGC
AACAGCATCACCAGCAGCATGACAGCGTTAAGGTGGAACCCGAGTACCAG
ATTAGTCCCGATGCCTCCGAGCACAATCCACAGGCGGACACATTCGACGA
GATCGAGATGGATGCCAACGATGTGAGCGAGATTGACGAGGACCCAATGG
AGCAGCAGCAGCAACAGCAGCAGGAGGCTCAGGCCCAAGCCCAAGCCCAA
GCCCAAGCTCAGGCCCAAGTGCAATCCGCCGCCGCCGAGATGCAGAAGAT
GCAACAGGTGAACGCGGTGGCTGCGGCGGCGGCGGCCAATGCCACCATGA
TCAACACCCACCAGATAAACGTGGACCAGATCAGTGCTGAGAAGCTGACT
CTGAATGATCTGCTGCACTTCAAGACAGCTCGCCCCCGCGAGGAGATCAT
ATTGATTAAGCACCCAGAGGCTACCGCCACCCAGATCCACACCATACCCA
CCCAGGCGCAGCAGCATCCAATGGCCACAATTACCGCCGGCGGCTACAAT
CAGCAGATCATTAGTGAGATCAAGCCCCAGCAAATCACTTTGGCCCAGTA
CCAGGCTCAGCAGCAACAGCAGGCTCAAGCGCAGGCCCAGGCCCAAGCGC
AGGCTCAAGCGCAAGCTCAGGCACAAGCCCAGGCCCAAGCACAGGCGCAA
CAGCTTGCCCAGCAGCAACTTGCTGCCGCTCAACATCAGCAACTAGCCGC
CGCCGTCCAAGTGCATCACCAGCAGCAGCAGCAACAACAGGCGGCCGTTG
CCGTCCAACAGCAACAGGCAGCAGCGGCGGCGGCGGTTAAGATGCAACTA
ACCGCCGCCACGCCCACGTTTACCTTCAGCGCCCTGCCCACAGTTACGGC
TGCTACGACAGTGCCGGCGGCGGTTCCAGTGCCTGTGGCCACTGCATCAT
CGGGATCTGCGAACTCAGTGGCGGTCAACACATCAACAGCCTCCTCCGTG
AGTATCAACAACACCAGCCTGGGCGGAGGAGGGGGTAATGGAGCCACTAA
TGCGTCTGCTACCGCTGCGGACAGCTTCGAAGAGCGAATGAACTACTTCA
AAATCCGCGAGGCTGAACTGCGCTGCAAGGAGCAGCAGCTGGCCACAGAA
GCCAAGCGCATTGAACTCAACAAGGCGCAGGATGAACTCAAGTACATGAA
GGAGGTGCATCGACTTCGAGTCGAGGAGCTGACAATGAAGATACGCATCC
TGCAAAAAGAGGAGGAACAACTGCGGAAGTGCTCCACTTCAGCAAGCTTT
CTAGACCAT

BO01216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
z-RC 1818 CG7803-PC 1..1725 17..1741 8580 99.8 Plus
z-RB 1728 CG7803-PB 1..1725 17..1741 8580 99.8 Plus
z-RA 1728 CG7803-PA 1..1725 17..1741 8580 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
z-RC 2412 CG7803-RC 342..2066 17..1741 8580 99.8 Plus
z-RB 2412 CG7803-RB 342..2066 17..1741 8580 99.8 Plus
z-RA 2599 CG7803-RA 529..2253 17..1741 8580 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2449389..2450204 926..1741 4035 99.6 Plus
X 23542271 X 2448784..2449327 383..926 2720 100 Plus
X 23542271 X 2448297..2448664 17..384 1840 100 Plus
Blast to na_te.dros performed 2014-11-28 01:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6900 1058..1239 236 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2518 1046..1239 218 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6677..6922 998..1240 215 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..7059 1046..1351 211 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6679..6839 1117..1278 202 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2511 1063..1278 200 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2466 1119..1278 193 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2999 485..1165 189 52.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..7000 959..1240 187 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6913 1099..1286 186 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6952 1182..1409 180 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6688..6857 1096..1275 171 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2491 1181..1360 167 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..7099 484..858 162 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6953 1214..1449 157 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2977 481..681 154 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6791 484..526 154 86.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6812 484..526 154 86.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1470..1599 1130..1263 153 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2442 1147..1281 150 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6870 484..549 148 72.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6790..6825 484..519 144 88.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6823..6862 484..523 137 82.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2258..2338 438..519 136 67.5 Plus
roo 9092 roo DM_ROO 9092bp 1071..1154 1161..1238 134 69 Plus
roo 9092 roo DM_ROO 9092bp 1112..1143 488..519 133 90.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2385 1208..1284 128 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2817..2989 485..669 128 58.4 Plus
roo 9092 roo DM_ROO 9092bp 1075..1118 484..526 127 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2651 928..1240 126 55.5 Plus
roo 9092 roo DM_ROO 9092bp 1117..1180 484..545 125 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1533..1564 488..519 124 87.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 488..519 124 87.5 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 974..1031 1207..1266 124 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6842..6884 485..526 122 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2798..2832 484..518 121 82.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3226..3310 1158..1239 120 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2627..2966 484..834 116 53.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3291..3324 488..521 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2402..2431 484..513 114 86.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6908 393..526 113 57.7 Plus

BO01216.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:32 Download gff for BO01216.complete
Subject Subject Range Query Range Percent Splice Strand
z-RB 328..2052 17..1743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:06 Download gff for BO01216.complete
Subject Subject Range Query Range Percent Splice Strand
z-RA 529..2253 17..1743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:38 Download gff for BO01216.complete
Subject Subject Range Query Range Percent Splice Strand
z-RA 529..2253 17..1743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:38 Download gff for BO01216.complete
Subject Subject Range Query Range Percent Splice Strand
X 2448297..2448664 17..384 100 -> Plus
X 2448786..2449327 385..926 100 -> Plus
X 2449390..2450204 927..1743 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:06 Download gff for BO01216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2342330..2342697 17..384 100 -> Plus
arm_X 2342819..2343360 385..926 100 -> Plus
arm_X 2343423..2344237 927..1743 99   Plus

BO01216.pep Sequence

Translation from 16 to 1759

> BO01216.pep
MSAQGEGGGAGGSGGGGAGSDGGGNAGQSSTGSGTVAVTNGGNSSAKNQL
PLTPRFTAEEKEVLYTLFHLHEEVIDIKHRKKQRNKYSVRETWDKIVKDF
NSHPHVSAMRNIKQIQKFWLNSRLRKQYPYRDGSSSNLSSGSAKISSVSV
SVASAVPQQQQQQHHQQHDSVKVEPEYQISPDASEHNPQADTFDEIEMDA
NDVSEIDEDPMEQQQQQQQEAQAQAQAQAQAQAQVQSAAAEMQKMQQVNA
VAAAAAANATMINTHQINVDQISAEKLTLNDLLHFKTARPREEIILIKHP
EATATQIHTIPTQAQQHPMATITAGGYNQQIISEIKPQQITLAQYQAQQQ
QQAQAQAQAQAQAQAQAQAQAQAQAQAQQLAQQQLAAAQHQQLAAAVQVH
HQQQQQQQAAVAVQQQQAAAAAAVKMQLTAATPTFTFSALPTVTAATTVP
AAVPVPVATASSGSANSVAVNTSTASSVSINNTSLGGGGGNGATNASATA
ADSFEERMNYFKIREAELRCKEQQLATEAKRIELNKAQDELKYMKEVHRL
RVEELTMKIRILQKEEEQLRKCSTSASFLDH

BO01216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
z-PC 605 CG7803-PC 1..580 1..580 2866 99.3 Plus
z-PB 575 CG7803-PB 1..575 1..575 2864 100 Plus
z-PA 575 CG7803-PA 1..575 1..575 2864 100 Plus
mbl-PJ 789 CG33197-PJ 451..781 127..482 209 28.1 Plus
mbl-PK 803 CG33197-PK 465..795 127..482 209 28.1 Plus
mbl-PJ 789 CG33197-PJ 239..689 134..544 182 24.1 Plus