Clone Sequence Records
BO01217.3prime Sequence
863 bp (723 high quality bases) assembled on 2005-11-30
> BO01217.3prime
ATGGTCTAGAAAGCTTGCCTTGATCCAGAGATACATTTTCCCCTGGATGG
TGTGCTTGACGGGATTGATCTTCTTCAGGATTTTCGTCATGGTCTCGACC
AAACGGTCGCTGGAGACAGGCGTCTTCTTGTTCTTGAACTTGGTGAGCAA
CTCGGTGGCGGTCAGGGGCTTTCGCTTAAGATACCGACGCACCGCCTCCT
CGGTGATGCCGTAGTCCTCTACTTTGCCGCCAGAGAAGGAAGTGGGCAGC
GATGTGCTAATCTCGTTCTTAGGCCTCTTTGCTGGCGTGCTGGTGGGACT
GTTGCTTGTGTCCGAAGCGGTGAGATCGCTGGGTAAGCTGTTCATCTTGC
GCTTGCTGGCATCCGTCGAGAGCGTTGGAGTGGCCGAGCGAGATTTATTG
GCATTGCTGCTGCTGGCGATGACCTTGCTGCTCGCAGCGCTCTCTTTCTC
CTTTTCCTTTTCCTTGTCTTTGTCCTTGACGACGACCTTCTTCTTGGGCG
GTCCGTTGCTAAGGTCGTCCTCGGAGTCTGTGCTGTCAGAGCTGAAGTCT
GTGGACGAGTCACCGCTGCCATTCGACTTGCCCTTCTTGTCGTCCTTTGT
GGGTTTCTTCTTCTTTTTGTCCTTGGATACCTCGTCCTTGCCCTTATCCT
TCTTTTTTTTCTCGCCGTCGGCATCCTCCTTGTCCGACTCATCAGACTTC
TTCTCATCATCCTCCTCTTCATCGGAGGTAAGCAGCTTGCGGAGCGCATC
TTCCTCGGCCACGCCTTTCATGTCCTTGTCCACCTTTGCCTCTGGATCTG
GTTCGTCTTCACTGGAGCTGGTGTCGTAGTCCATTTCTCTGCCCTCCTCG
TCACCATCGTCCG
BO01217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10281-PA | 1734 | TfIIFalpha-RA | 887..1731 | 863..19 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIFalpha-RA | 1938 | CG10281-RA | 1016..1860 | 863..19 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6381682..6382270 | 805..217 | 2945 | 100 | Minus |
| 3R | 32079331 | 3R | 6382328..6382526 | 217..19 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 6381548..6381605 | 863..806 | 290 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6886 | 432..279 | 126 | 58.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6904 | 432..276 | 120 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1568 | 460..404 | 114 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6867 | 478..396 | 108 | 61.9 | Minus |
BO01217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:26:02 Download gff for
BO01217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10281-PA | 887..1734 | 18..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:21:38 Download gff for
BO01217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10281-PA | 887..1734 | 18..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:47:30 Download gff for
BO01217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFalpha-RA | 1016..1864 | 13..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:39 Download gff for
BO01217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFalpha-RA | 1016..1864 | 13..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:39 Download gff for
BO01217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6382328..6382530 | 13..217 | 98 | | Minus |
| 3R | 6381548..6381605 | 806..863 | 100 | -> | Minus |
| 3R | 6381682..6382269 | 218..805 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:47:30 Download gff for
BO01217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2207270..2207327 | 806..863 | 100 | -> | Minus |
| arm_3R | 2207404..2207991 | 218..805 | 100 | -> | Minus |
| arm_3R | 2208050..2208252 | 13..217 | 98 | | Minus |
BO01217.complete Sequence
1765 bp assembled on 2008-11-11
GenBank Submission: KX797592
> BO01217.complete
GAAGTTATCAGTCGACATGTCGAGCGCGTCAAAGTCGACGCCGAGCGCTG
CCAGCGGGAGCTCCACGTCCGCAGCTGCCGCCGCCGCAGCCTCTGTCGCC
TCAGGATCCGCCTCGTCATCCGCCAACGTGCAGGAGTTCAAGATCCGCGT
GCCCAAGATGCCCAAGAAGCACCATGTGATGCGGTTCAACGCCACGCTCA
ATGTGGATTTCGCGCAGTGGAGAAATGTGAAACTGGAGCGGGAAAACAAC
ATGAAGGAGTTCCGGGGCATGGAGGAGGATCAGCCCAAGTTTGGTGCTGG
ATCGGAGTACAACCGGGATCAGCGCGAGGAGGCGCGCCGCAAGAAGTTTG
GCATTATAGCGAGAAAGTACCGTCCAGAGGCACAGCCATGGATCCTTAAA
GTGGGTGGCAAGACTGGAAAGAAGTTCAAAGGCATCCGCGAGGGCGGCGT
AGGCGAGAATGCAGCTTTCTATGTGTTCACCCATGCACCAGACGGCGCCA
TTGAGGCATACCCCTTGACCGAGTGGTACAACTTCCAGCCTATTCAGCGC
TACAAATCGCTGTCGGCGGAGGAGGCCGAACAGGAATTTGGTCGGCGCAA
AAAGGTGATGAACTACTTCTCCCTTATGTTGCGAAAGCGTCTGCGCGGCG
ATGAGGAAGAGGAGCAGGATCCGGAGGAGGCTAAGCTAATTAAGGCAGCC
ACCAAAAAATCCAAGGAGCTCAAGATCACTGACATGGATGAATGGATTGA
TTCCGAGGATGAGTCGGATTCGGAGGACGAGGAGGATAAAAAGAAGAAGG
AGCAGGAAGACAGCGACGATGGCAAGGCCAAGGGAAAGGGCAAGAAGGGC
GCAGACAAGAAAAAGAAAAAGAGGGATGTTGATGACGAGGCCTTCGAGGA
GTCGGACGATGGTGACGAGGAGGGCAGAGAAATGGACTACGACACCAGCT
CCAGTGAAGACGAACCAGATCCAGAGGCAAAGGTGGACAAGGACATGAAA
GGCGTGGCCGAGGAAGATGCGCTCCGCAAGCTGCTTACCTCCGATGAAGA
GGAGGATGATGAGAAGAAGTCTGATGAGTCGGACAAGGAGGATGCCGACG
GCGAGAAAAAAAAGAAGGATAAGGGCAAGGACGAGGTATCCAAGGACAAA
AAGAAGAAGAAACCCACAAAGGACGACAAGAAGGGCAAGTCGAATGGCAG
CGGTGACTCGTCCACAGACTTCAGCTCTGACAGCACAGACTCCGAGGACG
ACCTTAGCAACGGACCGCCCAAGAAGAAGGTCGTCGTCAAGGACAAAGAC
AAGGAAAAGGAAAAGGAGAAAGAGAGCGCTGCGAGCAGCAAGGTCATCGC
CAGCAGCAGCAATGCCAATAAATCTCGCTCGGCCACTCCAACGCTCTCGA
CGGATGCCAGCAAGCGCAAGATGAACAGCTTACCCAGCGATCTCACCGCT
TCGGACACAAGCAACAGTCCCACCAGCACGCCAGCAAAGAGGCCTAAGAA
CGAGATTAGCACATCGCTGCCCACTTCCTTCTCTGGCGGCAAAGTAGAGG
ACTACGGCATCACCGAGGAGGCGGTGCGTCGGTATCTTAAGCGAAAGCCC
CTGACCGCCACCGAGTTGCTCACCAAGTTCAAGAACAAGAAGACGCCTGT
CTCCAGCGACCGTTTGGTCGAGACCATGACGAAAATCCTGAAGAAGATCA
ATCCCGTCAAGCACACCATCCAGGGGAAAATGTATCTCTGGATCAAGGCA
AGCTTTCTAGACCAT
BO01217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIFalpha-RA | 1734 | CG10281-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIFalpha-RA | 1938 | CG10281-RA | 129..1860 | 16..1747 | 8660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6380685..6381605 | 40..960 | 4605 | 100 | Plus |
| 3R | 32079331 | 3R | 6381682..6382270 | 961..1549 | 2945 | 100 | Plus |
| 3R | 32079331 | 3R | 6382328..6382526 | 1549..1747 | 995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1568 | 1306..1362 | 114 | 66.7 | Plus |
BO01217.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 11:36:56 Download gff for
BO01217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFalpha-RA | 138..1868 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:41 Download gff for
BO01217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFalpha-RA | 130..1860 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:56 Download gff for
BO01217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIFalpha-RA | 130..1860 | 17..1749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:56 Download gff for
BO01217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6380596..6380619 | 17..40 | 100 | -> | Plus |
| 3R | 6380686..6381605 | 41..960 | 100 | -> | Plus |
| 3R | 6381682..6382269 | 961..1548 | 100 | -> | Plus |
| 3R | 6382328..6382526 | 1549..1749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:41 Download gff for
BO01217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2206318..2206341 | 17..40 | 100 | -> | Plus |
| arm_3R | 2206408..2207327 | 41..960 | 100 | -> | Plus |
| arm_3R | 2207404..2207991 | 961..1548 | 100 | -> | Plus |
| arm_3R | 2208050..2208248 | 1549..1749 | 99 | | Plus |
BO01217.pep Sequence
Translation from 16 to 1765
> BO01217.pep
MSSASKSTPSAASGSSTSAAAAAAASVASGSASSSANVQEFKIRVPKMPK
KHHVMRFNATLNVDFAQWRNVKLERENNMKEFRGMEEDQPKFGAGSEYNR
DQREEARRKKFGIIARKYRPEAQPWILKVGGKTGKKFKGIREGGVGENAA
FYVFTHAPDGAIEAYPLTEWYNFQPIQRYKSLSAEEAEQEFGRRKKVMNY
FSLMLRKRLRGDEEEEQDPEEAKLIKAATKKSKELKITDMDEWIDSEDES
DSEDEEDKKKKEQEDSDDGKAKGKGKKGADKKKKKRDVDDEAFEESDDGD
EEGREMDYDTSSSEDEPDPEAKVDKDMKGVAEEDALRKLLTSDEEEDDEK
KSDESDKEDADGEKKKKDKGKDEVSKDKKKKKPTKDDKKGKSNGSGDSST
DFSSDSTDSEDDLSNGPPKKKVVVKDKDKEKEKEKESAASSKVIASSSNA
NKSRSATPTLSTDASKRKMNSLPSDLTASDTSNSPTSTPAKRPKNEISTS
LPTSFSGGKVEDYGITEEAVRRYLKRKPLTATELLTKFKNKKTPVSSDRL
VETMTKILKKINPVKHTIQGKMYLWIKASFLDH
BO01217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIFalpha-PA | 577 | CG10281-PA | 1..577 | 1..577 | 2946 | 100 | Plus |
| CG8108-PA | 919 | CG8108-PA | 246..463 | 188..410 | 220 | 29.7 | Plus |
| CG8108-PB | 919 | CG8108-PB | 246..463 | 188..410 | 220 | 29.7 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 771..980 | 212..417 | 220 | 27.5 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 771..980 | 212..417 | 220 | 27.5 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 703..994 | 185..472 | 208 | 23.3 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 697..904 | 208..436 | 187 | 25.6 | Plus |
| CG8108-PA | 919 | CG8108-PA | 245..475 | 217..444 | 167 | 26.7 | Plus |
| CG8108-PB | 919 | CG8108-PB | 245..475 | 217..444 | 167 | 26.7 | Plus |
